RchiOBHm_Chr4g0394841

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
10597738 .. 10601543
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36731

Sequence Viewer

Length: 1350 bp
ATGGAGCAGCAAATTGCAAAAGAAAAGCCTGCAATTTCTTTCGAGTATGAGCTCTTTCAAGACCCTGATCATCTAACAACTGTTGTAGCTACACTCACTCCAACTAGTCCCCGGATCAATCCTGCCTCATTGAACTTTAAGTACCGAATTGGACAGGGCCCCTTTGGTGATGTATGGTTAGCAACTCATCACCAGTCAGCAGATGATTATGATGAATATCATGAGGTAGCAGTTAAGATGTTGCATCCTTTGATGGAGGAGGACAGAGAAAAGTTTCTGCACAAGTTCGAAAAGTTATTTTTCAAGTTCCGCAGACTGTGCGGTGTTTGTTGGTTTCATGGTATCTCAATCATTGATGGAAGGATCTGCATCGCTATGAAATTTTATGAGGGGTCAGTTGGTGACCGAGTTGCTAGGTTGAAGGGTGGAAAACTTCAACTTTTTGATGTTTTAAGGTATGGGATTGAGTTGGCAAAAGGAATTTCAGAATTGCATTCACTAGGGCTTCTGGTGCTAAATTTGAAGCCGTCCAACATCCTTGTAGATGAACACGGCCAGGTGGTCCTTGGAGATTTTGGAATCCCATTTCTACTTCTTGGGGCTTCATTGTCTAATCCTAATATGGCTTTTAGACTTGGCACTCCGAACTACATGGCTCCAGAACAGTGGGAACCAGAAGTGAGGGGTCCTATATCTTTAGAAACAGATTCTTGGGGCTTTGGATGTTGCTTTGTAGAGATGTTGACTGGTAGTCAACCCTGGTTTGGGAGTTCAATTAAAGAGATATATCATTCAGTTGTGATCAAGCGAGAAAAGCCACCTGTTCCAAGTGGTTTGCCTCCTGCAGTGGAGAATGTTATCAACGGCTGCTTTGAGTATGATCTCCATAATAGGCCCTCAATGGAAGATATCATACGTGCATTGGAAAGGTATACCCACTACCATTACCCACTACCATTACCCAATAATGGTAGAGGTTTCAAGGTCCGTGAGAGTATCACTAGGTCCTTAGCTATAGAGGAACCTGGAGACCATGGAGAAGCACACTTAGTAGCTCTGGGTGAACTAGAATTACAGATTCAAGATGAGGAGACAAATGGTTACTCGGCACAATATTCGTCAACTGGTTTTACTGATATGGGGAACACAGCAATATTATCTACCTTCAGCACGAGAACTATCAAGATTGGAGTACGCAAAGCTCCTGTGATACAACATTGTGCCGAAACAATTTCAGGATCAACTACTATTAGGAGCTTTGACCAGCATACTGGTTGTTTATATATGTGCTTCCTCATATATATGCTCAACTCCTTATCAGTTTTAGCCGGCTTTACTCCTTCGGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

50.37

Weight (kDa)

5.72

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 45 - 308 7.5e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 47 - 305 4e-28 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 932
AciI CCGC 2 cut(s) 310, 321
AclWI GGATC 3 cut(s) 122, 371, 1246
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 380, 480, 517
AcuI CTGAAG 1 cut(s) 1150
AfaI GTAC 2 cut(s) 143, 1194
AfiI CCNNNNNNNGG 3 cut(s) 764, 765, 968
AgsI TTSAA 9 cut(s) 59, 133, 304, 421, 437, 523, 774, 982, 1082
AhdI GACNNNNNGTC 1 cut(s) 750
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 3 cut(s) 555, 758, 1024
AluBI AGCT 6 cut(s) 52, 89, 1013, 1055, 1202, 1257
AluI AGCT 6 cut(s) 52, 89, 1013, 1055, 1202, 1257
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 1023, 1085
AlwI GGATC 3 cut(s) 122, 371, 1246
AoxI GGCC 3 cut(s) 157, 553, 893
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 7, 867
ApoI RAATTY 3 cut(s) 380, 480, 517
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 7 cut(s) 157, 158, 562, 686, 894, 985, 1005
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 4 cut(s) 179, 182, 413, 1073
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 4 cut(s) 562, 686, 985, 1005
BaeGI GKGCMC 1 cut(s) 161
BanII GRGCYC 2 cut(s) 54, 161
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BauI CACGAG 1 cut(s) 1171
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 19, 854
BccI CCATC 2 cut(s) 247, 350
BceAI ACGGC 3 cut(s) 511, 568, 880
BcgI CGANNNNNNTGC 2 cut(s) 1098, 1132
BciT130I CCWGG 3 cut(s) 557, 760, 1026
BclI TGATCA 2 cut(s) 67, 801
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 1023, 1085
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 5 cut(s) 105, 414, 500, 1002, 1067
BfmI CTRYAG 2 cut(s) 843, 1014
BisI GCNGC 2 cut(s) 8, 868
BlsI GCNGC 2 cut(s) 9, 869
Bme1390I CCNGG 4 cut(s) 112, 557, 760, 1026
Bme18I GGWCC 4 cut(s) 562, 686, 985, 1005
BmeRI GACNNNNNGTC 1 cut(s) 750
BmgT120I GGNCC 7 cut(s) 157, 158, 562, 686, 894, 985, 1005
BmiI GGNNCC 6 cut(s) 159, 160, 657, 672, 687, 1023
BmrFI CCNGG 4 cut(s) 112, 557, 760, 1026
BmsI GCATC 2 cut(s) 253, 378
BpmI CTGGAG 2 cut(s) 642, 1047
Bpu10I CCTNAGC 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 917
BsaBI GATNNNNATC 2 cut(s) 216, 368
BsaI GGTCTC 1 cut(s) 1023
BsaJI CCNNGG 4 cut(s) 110, 565, 758, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 764, 765, 968
Bse118I RCCGGY 1 cut(s) 1328
Bse1I ACTGG 4 cut(s) 193, 751, 1129, 1276
Bse8I GATNNNNATC 2 cut(s) 216, 368
BseBI CCWGG 3 cut(s) 557, 760, 1026
BseDI CCNNGG 4 cut(s) 110, 565, 758, 1033
BseGI GGATG 3 cut(s) 244, 534, 728
BseJI GATNNNNATC 2 cut(s) 216, 368
BseLI CCNNNNNNNGG 3 cut(s) 764, 765, 968
BseNI ACTGG 4 cut(s) 193, 751, 1129, 1276
BseRI GAGGAG 2 cut(s) 272, 1103
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 2 cut(s) 19, 854
BsgI GTGCAG 1 cut(s) 263
BshFI GGCC 3 cut(s) 159, 555, 895
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 112, 1329
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 764, 765, 968
BsmAI GTCTC 2 cut(s) 1023, 1085
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 3 cut(s) 159, 555, 895
Bso31I GGTCTC 1 cut(s) 1023
Bsp119I TTCGAA 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 54, 161
Bsp143I GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 2 cut(s) 310, 321
BspANI GGCC 3 cut(s) 159, 555, 895
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 6 cut(s) 159, 160, 657, 672, 687, 1023
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 3 cut(s) 122, 371, 1246
BspT104I TTCGAA 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 1328
BsrI ACTGG 4 cut(s) 193, 751, 1129, 1276
BssAI RCCGGY 1 cut(s) 1328
BssECI CCNNGG 4 cut(s) 110, 565, 758, 1033
BssMI GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
BssNAI GTATAC 1 cut(s) 933
BssSI CACGAG 1 cut(s) 1171
BssT1I CCWWGG 2 cut(s) 565, 1033
Bst1107I GTATAC 1 cut(s) 933
Bst2BI CACGAG 1 cut(s) 1171
Bst2UI CCWGG 3 cut(s) 557, 760, 1026
Bst4CI ACNGT 3 cut(s) 82, 318, 666
BstAPI GCANNNNNTGC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 917
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 30, 1330
BstDEI CTNAG 2 cut(s) 1009, 1048
BstDSI CCRYGG 1 cut(s) 1033
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 3 cut(s) 244, 534, 728
BstKTI GATC 6 cut(s) 70, 117, 366, 804, 883, 1241
BstMAI GTCTC 2 cut(s) 1023, 1085
BstMBI GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
BstMWI GCNNNNNNNGC 3 cut(s) 318, 511, 814
BstNI CCWGG 3 cut(s) 557, 760, 1026
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 110, 555, 758, 1024
BstSFI CTRYAG 2 cut(s) 843, 1014
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 19, 854
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 2 cut(s) 666, 1271
BstYI RGATCY 1 cut(s) 363
BstZ17I GTATAC 1 cut(s) 933
BsuRI GGCC 3 cut(s) 159, 555, 895
BtgI CCRYGG 1 cut(s) 1033
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 3 cut(s) 244, 534, 728
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 2 cut(s) 671, 852
Cac8I GCNNGC 2 cut(s) 30, 1330
CciI TCATGA 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 1328
Cfr13I GGNCC 7 cut(s) 157, 158, 562, 686, 894, 985, 1005
Csp6I GTAC 2 cut(s) 142, 1193
CviAII CATG 4 cut(s) 221, 338, 652, 1034
CviQI GTAC 2 cut(s) 142, 1193
DdeI CTNAG 2 cut(s) 1009, 1048
DpnI GATC 6 cut(s) 69, 116, 365, 803, 882, 1240
DpnII GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
DriI GACNNNNNGTC 1 cut(s) 750
EaeI YGGCCR 1 cut(s) 553
Eam1105I GACNNNNNGTC 1 cut(s) 750
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 565, 1033
Eco24I GRGCYC 2 cut(s) 54, 161
Eco31I GGTCTC 1 cut(s) 1023
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 4 cut(s) 562, 686, 985, 1005
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 1150
Eco91I GGTNACC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 5 cut(s) 157, 158, 686, 894, 1005
EcoO65I GGTNACC 1 cut(s) 401
EcoRII CCWGG 3 cut(s) 555, 758, 1024
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 2 cut(s) 565, 1033
EcoT38I GRGCYC 2 cut(s) 54, 161
ErhI CCWWGG 2 cut(s) 565, 1033
FaeI CATG 4 cut(s) 224, 341, 655, 1037
FaqI GGGAC 1 cut(s) 93
FatI CATG 4 cut(s) 220, 337, 651, 1033
FbaI TGATCA 2 cut(s) 67, 801
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 2 cut(s) 8, 868
FokI GGATG 3 cut(s) 231, 521, 735
FriOI GRGCYC 2 cut(s) 54, 161
Fsp4HI GCNGC 2 cut(s) 8, 868
FspBI CTAG 5 cut(s) 105, 414, 500, 1002, 1067
GluI GCNGC 2 cut(s) 8, 868
GsuI CTGGAG 2 cut(s) 642, 1047
HaeIII GGCC 3 cut(s) 159, 555, 895
HapII CCGG 2 cut(s) 112, 1329
Hin1II CATG 4 cut(s) 224, 341, 655, 1037
HincII GTYRAC 3 cut(s) 744, 755, 1122
HindII GTYRAC 3 cut(s) 744, 755, 1122
HinfI GANTC 3 cut(s) 579, 707, 1078
HpaII CCGG 2 cut(s) 112, 1329
HphI GGTGA 4 cut(s) 179, 182, 413, 1073
Hpy166II GTNNAC 5 cut(s) 744, 755, 933, 1064, 1122
Hpy188I TCNGA 2 cut(s) 487, 645
Hpy188III TCNNGA 6 cut(s) 59, 221, 659, 1082, 1183, 1236
Hpy8I GTNNAC 5 cut(s) 744, 755, 933, 1064, 1122
HpyAV CCTTC 4 cut(s) 354, 415, 1174, 1350
HpyCH4III ACNGT 3 cut(s) 82, 318, 666
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 8 cut(s) 17, 32, 244, 280, 369, 493, 845, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 511, 814
HpyF3I CTNAG 2 cut(s) 1009, 1048
HpySE526I ACGT 1 cut(s) 916
Hsp92II CATG 4 cut(s) 224, 341, 655, 1037
KroI GCCGGC 1 cut(s) 1328
KroNI GCCGGC 1 cut(s) 1330
Ksp22I TGATCA 2 cut(s) 67, 801
Kzo9I GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
LmnI GCTCC 4 cut(s) 4, 661, 1207, 1254
Lsp1109I GCAGC 2 cut(s) 19, 854
LweI GCATC 2 cut(s) 253, 378
MaeI CTAG 5 cut(s) 105, 414, 500, 1002, 1067
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 2 cut(s) 401, 1100
MalI GATC 6 cut(s) 69, 116, 365, 803, 882, 1240
MboI GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
MboII GAAGA 1 cut(s) 917
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 54, 161
MmeI TCCRAC 2 cut(s) 125, 555
MroNI GCCGGC 1 cut(s) 1328
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 4 cut(s) 138, 234, 452, 777
MslI CAYNNNNRTG 2 cut(s) 374, 1301
MspI CCGG 2 cut(s) 112, 1329
MspR9I CCNGG 4 cut(s) 112, 557, 760, 1026
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 3 cut(s) 557, 760, 1026
MwoI GCNNNNNNNGC 3 cut(s) 318, 511, 814
NaeI GCCGGC 1 cut(s) 1330
NciI CCSGG 1 cut(s) 112
NcoI CCATGG 1 cut(s) 1033
NdeII GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
NgoMIV GCCGGC 1 cut(s) 1328
NlaIII CATG 4 cut(s) 224, 341, 655, 1037
NlaIV GGNNCC 6 cut(s) 159, 160, 657, 672, 687, 1023
NmeAIII GCCGAG 1 cut(s) 1085
NmuCI GTSAC 1 cut(s) 401
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 1330
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 579, 707, 1078
PkrI GCNGC 2 cut(s) 9, 869
Ppu21I YACGTR 1 cut(s) 917
PpuMI RGGWCCY 2 cut(s) 686, 1005
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 2 cut(s) 686, 1005
Psp6I CCWGG 3 cut(s) 555, 758, 1024
PspEI GGTNACC 1 cut(s) 401
PspGI CCWGG 3 cut(s) 555, 758, 1024
PspN4I GGNNCC 6 cut(s) 159, 160, 657, 672, 687, 1023
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 7 cut(s) 157, 158, 562, 686, 894, 985, 1005
PspPPI RGGWCCY 2 cut(s) 686, 1005
PsrI GAACNNNNNNTAC 4 cut(s) 125, 157, 1056, 1088
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 2 cut(s) 143, 1194
RsaNI GTAC 2 cut(s) 142, 1193
RseI CAYNNNNRTG 2 cut(s) 374, 1301
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 138, 234, 452, 777
SatI GCNGC 2 cut(s) 8, 868
Sau3AI GATC 6 cut(s) 67, 114, 363, 801, 880, 1238
Sau96I GGNCC 7 cut(s) 157, 158, 562, 686, 894, 985, 1005
ScrFI CCNGG 4 cut(s) 112, 557, 760, 1026
SduI GDGCHC 2 cut(s) 54, 161
SfaNI GCATC 2 cut(s) 253, 378
SfcI CTRYAG 2 cut(s) 843, 1014
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 4 cut(s) 562, 686, 985, 1005
SmiMI CAYNNNNRTG 2 cut(s) 374, 1301
SpeI ACTAGT 1 cut(s) 104
SsiI CCGC 2 cut(s) 310, 321
SspI AATATT 2 cut(s) 1115, 1155
SspMI CTAG 5 cut(s) 105, 414, 500, 1002, 1067
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 110, 555, 758, 1024
StyI CCWWGG 2 cut(s) 565, 1033
TaaI ACNGT 3 cut(s) 82, 318, 666
TaiI ACGT 1 cut(s) 919
TaqI TCGA 2 cut(s) 42, 288
TaqII GACCGA 1 cut(s) 420
TfiI GAWTC 3 cut(s) 579, 707, 1078
Tru1I TTAA 4 cut(s) 138, 234, 452, 777
Tru9I TTAA 4 cut(s) 138, 234, 452, 777
TscAI CASTG 2 cut(s) 671, 852
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 2 cut(s) 7, 867
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 5 cut(s) 228, 326, 392, 561, 594
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 2 cut(s) 671, 852
VpaK11BI GGWCC 4 cut(s) 562, 686, 985, 1005
XapI RAATTY 3 cut(s) 380, 480, 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 5 cut(s) 105, 414, 500, 1002, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.