Rmu_sc0002674.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002674.1
OG0008063
Physical Location & Seq
Forward (+)
37221 .. 37610
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002674.1_g000011.1.cds

Sequence Viewer

Length: 390 bp
atgcgccatcttcttcaggttaaagagtcggaagtggtggaggctaaactcgaaattcagcatttaaaatctgagctggctacccataagctcattgtggaggaaaaggatttggaacttctaaatgcaaggaagaagcttgaggaagtcaacaatgaagttgcagagctgaagatgcttttgactagtaaagaggagcagcttattcaagcaactgccttgctcaaggagaaagatgaacatgtacacacaatgcaagatgagttggatgatacaaagctgaaattttcagaagccgaaactgtggtagaacggatagcagagctcactgataaattggttagatctatcaaggatgaagactacaatgcatcttgcactcattcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.93

Weight (kDa)

5.01

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 54, 284
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 185
AluBI AGCT 7 cut(s) 76, 91, 139, 169, 202, 280, 325
AluI AGCT 7 cut(s) 76, 91, 139, 169, 202, 280, 325
Alw21I GWGCWC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 54, 284
AspLEI GCGC 1 cut(s) 6
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 15
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 344
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmsI GCATC 2 cut(s) 165, 380
BpiI GAAGAC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 161, 209
BseGI GGATG 2 cut(s) 274, 361
BseMII CTCAG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 244
BssMI GATC 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 304
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 274, 361
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BtsCI GGATG 2 cut(s) 274, 361
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 386
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 242, 387
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
DraI TTTAAA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 327
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 327
FaeI CATG 2 cut(s) 245, 390
FaiI YATR 3 cut(s) 87, 243, 388
FatI CATG 2 cut(s) 241, 386
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 281, 368
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 245, 390
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 151, 247
Hpy188I TCNGA 3 cut(s) 31, 73, 292
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 2 cut(s) 151, 247
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 128, 164, 256, 371, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 245, 390
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 2, 62
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 2 cut(s) 165, 380
MaeI CTAG 1 cut(s) 186
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 4 cut(s) 5, 145, 184, 371
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 3 cut(s) 54, 284, 335
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 9, 246
MnlI CCTC 4 cut(s) 34, 94, 136, 187
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 2 cut(s) 21, 65
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 1 cut(s) 344
NlaIII CATG 2 cut(s) 245, 390
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 245
PagI TCATGA 1 cut(s) 386
PciI ACATGT 1 cut(s) 241
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 21, 65
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 344
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 21, 78, 93, 141, 171, 204, 282, 327
SfaNI GCATC 2 cut(s) 165, 380
SmlI CTYRAG 2 cut(s) 140, 224
SmoI CTYRAG 2 cut(s) 140, 224
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 3 cut(s) 54, 284, 335
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 1 cut(s) 327
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 54, 284, 335
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 2 cut(s) 21, 65
Tru9I TTAA 2 cut(s) 21, 65
TscAI CASTG 1 cut(s) 334
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 171, 252, 372, 375
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 334
XapI RAATTY 2 cut(s) 54, 284
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.