Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017073

Physical Location & Seq

Genomic Coordinates Forward (+)

15660927 .. 15662879

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGATATACACGTTGACGAGAGGTTCGCTTCTCGGCTCTACCTGTAAGCTACGCTACTCTTCTTTATTTTCTTATCTGAGCACAGCTGCGCTGAGATTGGGTTTTGAAAACCCTACTAATGGAAATCCGATGGATAATTCTTCGCATCACATTGGTTATGTAAATGGGTTTAACGGTGGAGAACAATCGCTTGGTGGGTTTCAGCAGAATTCATATGAGCAGAGCTTAAACCCTGTTTCTGGGCAGAATCCGACGAATAGGTTTTATCAAAACGGATACAATCGGAATCAGAGTTATGGGGAACATAGTGAAATTATTAATCAGAGAAATCAAAATTGGCAAAGTAGTGATGGTTGTTCCTCGTATGGAACTACTGGAAATGGAGTTCCACAAGAGAATAATACTGGTGGGAATCATTTTCAGCAAGATCATAGTGGTCATAGCTCGTTGGACGAATTGGATTCGATTTGCAGAGAAGGGAAGGTTAAAAAAGCTGTTGAAATTATTAAATCATGGAGAAATGAGGGTTATGTTGTGGATTTACCTAGACTGTTTTGGATAGCACAGCTTTGTGGAGATGCACAAGCTTTACAAGAAGCCAAAGTTGTTCATGAGTTTATTACTTCTTCGGTTGGGATTTCAGATATCAGCGCTTACAACTCGATAATCGAAATGTACTCTGGTTGTGGTTCTGTGGAAGATGCATTAACCGTTTTCAATAGTATGCCTGAGAGAAACTTGGAGACTTGGTGTGGTGTTATAAGGTGTTTTGCAAAGAATGGGCAAGGGGAAGACGCCATTGATACGTTCTCTCGGTTTAAACAAGAAGGAAACAAACCTGATGGTGAAATGTTTAAAGAGATCTTCTTTGCGTGTGGTGTTCTTGGTGACATGAACGAGGGACTGTTGCACTTTGAGTCCATGTACAAAGAGTATGGAATTATCCCTTGTATGGAACATTACGTGAGCCTCGTTAAAATGTTGGCGGAGCCTGGTTATTTAGATGAAGCCTTGAGATTTGTTGAATCGATGGAACCAAATGTAGATTTGTGGGAAACCCTGATGAATCTATCACGGGTTCATGGGGATTTAATTCTTGGCGACCGGTGTCAAGATATGGTTGAGCAGCTTGATGCAAGTAGACTGAACAAAGAGTCAAAGGCGGGTCTTGTACCTGTGAAATCATCAGACCTAGTAAAAGAGAAATTACAAAGAATGGCCAAAGGGCCAAATTATGGGATTCGATATATGGCAGCTGGAGATATTTCTCGTCCAGAAAACAGAGAGTTGTATATGGCATTGAAGAGTTTAAAGGAGCATATGATAGAAATTGGTTATGTACCTCTATCTAAACTTGCATTGCACGACGTGGACCAAGAGAGCAAAGACGAAAACCTTTTCAATCATAATGAGAGATTCGCTTTCATCTCGACATTTCTTGACACTCCTGCGCGTTCGTTAATACGAGTAATGAAAAATCTACGTGTATGCGCAGATTGCCATAACGCATTGAAGTTGATGTCAAAGATAGTTGGGAGAGAGTTGATTTCGCGAGATGCAAAGAGGTTTCACCATATGAAAGATGGTGTTTGCTCCTGTAGAGAGTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

537

Amino Acids

60.54

Weight (kDa)

5.65

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	445 - 537	1.1e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32450
fragaria_vesca	FvH4_1g18840 FvH4_2g29640
rosa_chinensis	RchiOBHm_Chr6g0298611
rosa_laevigata	RLG00000011499
rosa_multiflora	Rmu_sc0004500.1_g000016
rosa_roxburghii	Rroxscaffold_7G00169490
rosa_rugosa	Rorug06G0281700
rosa_samantha	Rh6AG393100 Rh6BG400800 Rh6CG406800 Rh6DG393400
rosa_wichuraiana	Rw6G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	1492
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccI	GTMKAC	1 cut(s)	1141
AccII	CGCG	2 cut(s)	1453, 1552
AciI	CCGC	2 cut(s)	986, 1163
AcoI	YGGCCR	1 cut(s)	1218
AcsI	RAATTY	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	795
AdeI	CACNNNGTG	1 cut(s)	1369
AfaI	GTAC	4 cut(s)	677, 926, 1173, 1341
AfeI	AGCGCT	1 cut(s)	652
AfiI	CCNNNNNNNGG	4 cut(s)	119, 239, 952, 1235
AflIII	ACRYGT	2 cut(s)	9, 1483
AgeI	ACCGGT	1 cut(s)	1104
AgsI	TTSAA	7 cut(s)	107, 500, 718, 1025, 1303, 1402, 1513
AjiI	CACGTC	1 cut(s)	1369
AjnI	CCWGG	1 cut(s)	991
AjuI	GAANNNNNNNTTGG	4 cut(s)	174, 206, 319, 351
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	9 cut(s)	49, 86, 225, 444, 494, 568, 587, 1129, 1256
AluI	AGCT	9 cut(s)	49, 86, 225, 444, 494, 568, 587, 1129, 1256
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	737
Aor51HI	AGCGCT	1 cut(s)	652
AoxI	GGCC	2 cut(s)	1218, 1226
ApeKI	GCWGC	3 cut(s)	86, 1126, 1253
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AseI	ATTAAT	1 cut(s)	318
AsiGI	ACCGGT	1 cut(s)	1104
AspLEI	GCGC	4 cut(s)	91, 653, 1453, 1493
AspS9I	GGNCC	2 cut(s)	1226, 1372
AsuHPI	GGTGA	3 cut(s)	857, 899, 1562
AvaII	GGWCC	1 cut(s)	1372
BalI	TGGCCA	1 cut(s)	1220
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	73, 1138, 1265
BccI	CCATC	5 cut(s)	124, 344, 836, 1024, 1577
BciT130I	CCWGG	1 cut(s)	993
BciVI	GTATCC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	2 cut(s)	546, 1193
BfmI	CTRYAG	1 cut(s)	1597
BfoI	RGCGCY	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	3 cut(s)	87, 1127, 1254
BlsI	GCNGC	3 cut(s)	88, 1128, 1255
Bme1390I	CCNGG	1 cut(s)	993
Bme18I	GGWCC	1 cut(s)	1372
BmgBI	CACGTC	1 cut(s)	1369
BmgT120I	GGNCC	2 cut(s)	1226, 1372
BmiI	GGNNCC	2 cut(s)	990, 1035
BmrFI	CCNGG	1 cut(s)	993
BmsI	GCATC	5 cut(s)	154, 568, 691, 1123, 1546
BoxI	GACNNNNGTC	1 cut(s)	1107
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	1 cut(s)	1278
BpuEI	CTTGAG	1 cut(s)	1033
Bsa29I	ATCGAT	1 cut(s)	1028
BsaAI	YACGTR	2 cut(s)	964, 1484
BsaHI	GRCGYC	1 cut(s)	795
BsaWI	WCCGGW	1 cut(s)	1104
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 239, 952, 1235
Bse118I	RCCGGY	1 cut(s)	1104
Bse1I	ACTGG	2 cut(s)	379, 409
Bse3DI	GCAATG	1 cut(s)	1358
BseBI	CCWGG	1 cut(s)	993
BseCI	ATCGAT	1 cut(s)	1028
BseLI	CCNNNNNNNGG	4 cut(s)	119, 239, 952, 1235
BseMI	GCAATG	1 cut(s)	1358
BseMII	CTCAG	3 cut(s)	68, 83, 720
BseNI	ACTGG	2 cut(s)	379, 409
BseXI	GCAGC	3 cut(s)	73, 1138, 1265
Bsh1236I	CGCG	2 cut(s)	1453, 1552
Bsh1285I	CGRYCG	1 cut(s)	1105
BshFI	GGCC	2 cut(s)	1220, 1228
BshTI	ACCGGT	1 cut(s)	1104
BshVI	ATCGAT	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	1105
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	1105
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	4 cut(s)	119, 239, 952, 1235
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	915
BsnI	GGCC	2 cut(s)	1220, 1228
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	924
Bsp143I	GATC	2 cut(s)	427, 861
Bsp68I	TCGCGA	1 cut(s)	1552
BspACI	CCGC	2 cut(s)	986, 1163
BspANI	GGCC	2 cut(s)	1220, 1228
BspCNI	CTCAG	3 cut(s)	69, 84, 721
BspDI	ATCGAT	1 cut(s)	1028
BspFNI	CGCG	2 cut(s)	1453, 1552
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	990, 1035
BsrDI	GCAATG	1 cut(s)	1358
BsrFI	RCCGGY	1 cut(s)	1104
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	2 cut(s)	379, 409
BssAI	RCCGGY	1 cut(s)	1104
BssMI	GATC	2 cut(s)	427, 861
BssNI	GRCGYC	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	993
Bst4CI	ACNGT	4 cut(s)	176, 552, 712, 906
Bst6I	CTCTTC	2 cut(s)	64, 1298
BstACI	GRCGYC	1 cut(s)	795
BstAUI	TGTACA	1 cut(s)	924
BstBAI	YACGTR	2 cut(s)	964, 1484
BstDEI	CTNAG	3 cut(s)	77, 92, 729
BstFNI	CGCG	2 cut(s)	1453, 1552
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	4 cut(s)	91, 653, 1453, 1493
BstKTI	GATC	2 cut(s)	430, 864
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	2 cut(s)	427, 861
BstMCI	CGRYCG	1 cut(s)	1105
BstMWI	GCNNNNNNNGC	1 cut(s)	1497
BstNI	CCWGG	1 cut(s)	993
BstPAI	GACNNNNGTC	1 cut(s)	1107
BstSCI	CCNGG	1 cut(s)	991
BstSFI	CTRYAG	1 cut(s)	1597
BstUI	CGCG	2 cut(s)	1453, 1552
BstV1I	GCAGC	3 cut(s)	73, 1138, 1265
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
Bsu15I	ATCGAT	1 cut(s)	1028
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	1220, 1228
BsuTUI	ATCGAT	1 cut(s)	1028
BtrI	CACGTC	1 cut(s)	1369
BtuMI	TCGCGA	1 cut(s)	1552
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	4 cut(s)	91, 653, 1453, 1493
Cfr10I	RCCGGY	1 cut(s)	1104
Cfr13I	GGNCC	2 cut(s)	1226, 1372
ClaI	ATCGAT	1 cut(s)	1028
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	676, 925, 1172, 1340
CspAI	ACCGGT	1 cut(s)	1104
CviAII	CATG	5 cut(s)	513, 611, 892, 922, 1082
CviQI	GTAC	4 cut(s)	676, 925, 1172, 1340
DdeI	CTNAG	3 cut(s)	77, 92, 729
DpnI	GATC	2 cut(s)	429, 863
DpnII	GATC	2 cut(s)	427, 861
DraI	TTTAAA	3 cut(s)	820, 856, 1311
DraIII	CACNNNGTG	1 cut(s)	1369
EaeI	YGGCCR	1 cut(s)	1218
Eam1104I	CTCTTC	2 cut(s)	64, 1298
EarI	CTCTTC	2 cut(s)	64, 1298
EciI	GGCGGA	1 cut(s)	1001
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	1372
Eco47III	AGCGCT	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	991
EcoRV	GATATC	1 cut(s)	646
EcoT22I	ATGCAT	1 cut(s)	706
FaeI	CATG	5 cut(s)	516, 614, 895, 925, 1085
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	5 cut(s)	512, 610, 891, 921, 1081
FauI	CCCGC	1 cut(s)	1156
FauNDI	CATATG	3 cut(s)	214, 1320, 1575
FblI	GTMKAC	1 cut(s)	1141
Fnu4HI	GCNGC	3 cut(s)	87, 1127, 1254
Fsp4HI	GCNGC	3 cut(s)	87, 1127, 1254
FspBI	CTAG	2 cut(s)	546, 1193
FspI	TGCGCA	1 cut(s)	1492
GlaI	GCGC	4 cut(s)	90, 652, 1452, 1492
GluI	GCNGC	3 cut(s)	87, 1127, 1254
GsuI	CTGGAG	1 cut(s)	1278
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	1220, 1228
HapII	CCGG	1 cut(s)	1105
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	4 cut(s)	91, 653, 1453, 1493
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	5 cut(s)	516, 614, 895, 925, 1085
Hin6I	GCGC	4 cut(s)	89, 651, 1451, 1491
HinP1I	GCGC	4 cut(s)	89, 651, 1451, 1491
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	585
HpaII	CCGG	1 cut(s)	1105
HphI	GGTGA	3 cut(s)	857, 899, 1562
Hpy166II	GTNNAC	3 cut(s)	15, 1142, 1372
Hpy188I	TCNGA	8 cut(s)	78, 129, 252, 285, 291, 324, 643, 1189
Hpy188III	TCNNGA	6 cut(s)	611, 1112, 1274, 1429, 1439, 1551
Hpy8I	GTNNAC	3 cut(s)	15, 1142, 1372
Hpy99I	CGWCG	2 cut(s)	256, 1370
HpyAV	CCTTC	3 cut(s)	470, 475, 821
HpyCH4III	ACNGT	4 cut(s)	176, 552, 712, 906
HpyCH4IV	ACGT	5 cut(s)	11, 806, 963, 1368, 1483
HpyCH4V	TGCA	9 cut(s)	471, 581, 704, 773, 910, 1136, 1358, 1363, 1559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1497
HpyF3I	CTNAG	3 cut(s)	77, 92, 729
HpySE526I	ACGT	5 cut(s)	11, 806, 963, 1368, 1483
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	5 cut(s)	516, 614, 895, 925, 1085
HspAI	GCGC	4 cut(s)	89, 651, 1451, 1491
Kzo9I	GATC	2 cut(s)	427, 861
LmnI	GCTCC	3 cut(s)	988, 1315, 1598
Lsp1109I	GCAGC	3 cut(s)	73, 1138, 1265
LweI	GCATC	5 cut(s)	154, 568, 691, 1123, 1546
MaeI	CTAG	2 cut(s)	546, 1193
MaeII	ACGT	5 cut(s)	11, 806, 963, 1368, 1483
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	2 cut(s)	429, 863
MboI	GATC	2 cut(s)	427, 861
MboII	GAAGA	7 cut(s)	51, 132, 618, 710, 803, 856, 1315
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	1220
MluNI	TGGCCA	1 cut(s)	1220
MlyI	GAGTC	2 cut(s)	926, 1163
MmeI	TCCRAC	2 cut(s)	275, 429
MnlI	CCTC	7 cut(s)	14, 370, 517, 892, 980, 1353, 1557
Mox20I	TGGCCA	1 cut(s)	1220
Mph1103I	ATGCAT	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	1220
Msp20I	TGGCCA	1 cut(s)	1220
MspA1I	CMGCKG	2 cut(s)	86, 1256
MspI	CCGG	1 cut(s)	1105
MspR9I	CCNGG	1 cut(s)	993
MssI	GTTTAAAC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	993
MvnI	CGCG	2 cut(s)	1453, 1552
MwoI	GCNNNNNNNGC	1 cut(s)	1497
NdeI	CATATG	3 cut(s)	214, 1320, 1575
NdeII	GATC	2 cut(s)	427, 861
NlaIII	CATG	5 cut(s)	516, 614, 895, 925, 1085
NlaIV	GGNNCC	2 cut(s)	990, 1035
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	887
NruI	TCGCGA	1 cut(s)	1552
NsbI	TGCGCA	1 cut(s)	1492
NsiI	ATGCAT	1 cut(s)	706
PagI	TCATGA	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	969
PfeI	GAWTC	8 cut(s)	247, 286, 412, 461, 1025, 1066, 1240, 1416
PflMI	CCANNNNNTGG	1 cut(s)	1235
PinAI	ACCGGT	1 cut(s)	1104
PkrI	GCNGC	3 cut(s)	88, 1128, 1255
PleI	GAGTC	2 cut(s)	925, 1162
PmeI	GTTTAAAC	1 cut(s)	820
PpsI	GAGTC	2 cut(s)	925, 1162
Ppu21I	YACGTR	2 cut(s)	964, 1484
PshAI	GACNNNNGTC	1 cut(s)	1107
PshBI	ATTAAT	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	991
PspGI	CCWGG	1 cut(s)	991
PspN4I	GGNNCC	2 cut(s)	990, 1035
PspPI	GGNCC	2 cut(s)	1226, 1372
PsuI	RGATCY	1 cut(s)	861
PvuII	CAGCTG	2 cut(s)	86, 1256
RruI	TCGCGA	1 cut(s)	1552
RsaI	GTAC	4 cut(s)	677, 926, 1173, 1341
RsaNI	GTAC	4 cut(s)	676, 925, 1172, 1340
SatI	GCNGC	3 cut(s)	87, 1127, 1254
Sau3AI	GATC	2 cut(s)	427, 861
Sau96I	GGNCC	2 cut(s)	1226, 1372
SchI	GAGTC	2 cut(s)	926, 1163
ScrFI	CCNGG	1 cut(s)	993
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	5 cut(s)	154, 568, 691, 1123, 1546
SfcI	CTRYAG	1 cut(s)	1597
SinI	GGWCC	1 cut(s)	1372
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SsiI	CCGC	2 cut(s)	986, 1163
SspMI	CTAG	2 cut(s)	546, 1193
StyD4I	CCNGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	176, 552, 712, 906
TaiI	ACGT	5 cut(s)	14, 809, 966, 1371, 1486
TaqI	TCGA	6 cut(s)	464, 662, 669, 1028, 1243, 1430
TatI	WGTACW	2 cut(s)	675, 924
TfiI	GAWTC	8 cut(s)	247, 286, 412, 461, 1025, 1066, 1240, 1416
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	3 cut(s)	86, 1126, 1253
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	9 cut(s)	201, 599, 908, 1020, 1070, 1079, 1414, 1487, 1592
TspGWI	ACGGA	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	1235
VpaK11BI	GGWCC	1 cut(s)	1372
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1580
XmiI	GTMKAC	1 cut(s)	1141
XspI	CTAG	2 cut(s)	546, 1193
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.