Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32450 |
| fragaria_vesca | FvH4_1g18840 FvH4_2g29640 |
| rosa_chinensis | RchiOBHm_Chr6g0298611 |
| rosa_laevigata | RLG00000011499 |
| rosa_multiflora | Rmu_sc0004500.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00169490 |
| rosa_rugosa | Rorug06G0281700 |
| rosa_samantha | Rh6AG393100 Rh6BG400800 Rh6CG406800 Rh6DG393400 |
| rosa_wichuraiana | Rw6G034360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AatII | GACGTC | 1 cut(s) | 1220 |
| AccB1I | GGYRCC | 1 cut(s) | 112 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 818, 872 |
| AciI | CCGC | 2 cut(s) | 375, 628 |
| AclWI | GGATC | 9 cut(s) | 60, 120, 133, 616, 695, 993, 1468, 1590, 1607 |
| AcsI | RAATTY | 5 cut(s) | 404, 529, 664, 712, 1137 |
| AcyI | GRCGYC | 1 cut(s) | 1217 |
| AfaI | GTAC | 2 cut(s) | 922, 1568 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 122, 310, 818, 845, 872, 1018, 1678 |
| AflIII | ACRYGT | 1 cut(s) | 787 |
| AjiI | CACGTC | 1 cut(s) | 790 |
| AjnI | CCWGG | 3 cut(s) | 242, 546, 1647 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 224, 256 |
| Alw21I | GWGCWC | 4 cut(s) | 350, 1011, 1127, 2090 |
| Alw26I | GTCTC | 4 cut(s) | 991, 1835, 1903, 1934 |
| Alw44I | GTGCAC | 1 cut(s) | 1007 |
| AlwI | GGATC | 9 cut(s) | 60, 120, 133, 616, 695, 993, 1468, 1590, 1607 |
| AoxI | GGCC | 2 cut(s) | 554, 1645 |
| ApaLI | GTGCAC | 1 cut(s) | 1007 |
| ApeKI | GCWGC | 3 cut(s) | 523, 706, 1703 |
| ApoI | RAATTY | 5 cut(s) | 404, 529, 664, 712, 1137 |
| AseI | ATTAAT | 1 cut(s) | 1181 |
| AspLEI | GCGC | 1 cut(s) | 1209 |
| AsuHPI | GGTGA | 4 cut(s) | 45, 536, 1944, 2000 |
| BaeGI | GKGCMC | 1 cut(s) | 1011 |
| BamHI | GGATCC | 1 cut(s) | 125 |
| BanI | GGYRCC | 1 cut(s) | 112 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 220, 252 |
| Bbv12I | GWGCWC | 4 cut(s) | 350, 1011, 1127, 2090 |
| BbvCI | CCTCAGC | 1 cut(s) | 885 |
| BbvI | GCAGC | 3 cut(s) | 535, 718, 1715 |
| BccI | CCATC | 5 cut(s) | 575, 1310, 1919, 2072, 2076 |
| BceAI | ACGGC | 1 cut(s) | 57 |
| BciT130I | CCWGG | 3 cut(s) | 244, 548, 1649 |
| BclI | TGATCA | 2 cut(s) | 721, 1603 |
| BcoDI | GTCTC | 4 cut(s) | 991, 1835, 1903, 1934 |
| BfaI | CTAG | 5 cut(s) | 171, 1248, 1598, 1610, 1845 |
| BfmI | CTRYAG | 2 cut(s) | 648, 1059 |
| BglII | AGATCT | 1 cut(s) | 1760 |
| BisI | GCNGC | 4 cut(s) | 524, 628, 707, 1704 |
| BlpI | GCTNAGC | 4 cut(s) | 33, 1593, 1895, 1942 |
| BlsI | GCNGC | 4 cut(s) | 525, 629, 708, 1705 |
| Bme1390I | CCNGG | 3 cut(s) | 244, 548, 1649 |
| BmgBI | CACGTC | 1 cut(s) | 790 |
| BmiI | GGNNCC | 6 cut(s) | 114, 127, 336, 1515, 1653, 2063 |
| BmrFI | CCNGG | 3 cut(s) | 244, 548, 1649 |
| BmrI | ACTGGG | 1 cut(s) | 413 |
| BmsI | GCATC | 6 cut(s) | 1029, 1258, 1354, 1533, 1876, 2041 |
| BmuI | ACTGGG | 1 cut(s) | 413 |
| BpmI | CTGGAG | 1 cut(s) | 1013 |
| Bpu10I | CCTNAGC | 1 cut(s) | 885 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 33, 1593, 1895, 1942 |
| BsaAI | YACGTR | 1 cut(s) | 538 |
| BsaHI | GRCGYC | 1 cut(s) | 1217 |
| BsaI | GGTCTC | 1 cut(s) | 1934 |
| BsaJI | CCNNGG | 2 cut(s) | 102, 557 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 122, 310, 818, 845, 872, 1018, 1678 |
| Bse1I | ACTGG | 1 cut(s) | 419 |
| Bse3DI | GCAATG | 3 cut(s) | 114, 406, 2101 |
| BseBI | CCWGG | 3 cut(s) | 244, 548, 1649 |
| BseDI | CCNNGG | 2 cut(s) | 102, 557 |
| BseGI | GGATG | 4 cut(s) | 140, 239, 1483, 1765 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 122, 310, 818, 845, 872, 1018, 1678 |
| BseMI | GCAATG | 3 cut(s) | 114, 406, 2101 |
| BseMII | CTCAG | 6 cut(s) | 47, 626, 876, 1301, 1584, 1956 |
| BseNI | ACTGG | 1 cut(s) | 419 |
| BseRI | GAGGAG | 2 cut(s) | 157, 1922 |
| BseSI | GKGCMC | 1 cut(s) | 1011 |
| BseXI | GCAGC | 3 cut(s) | 535, 718, 1715 |
| BseYI | CCCAGC | 1 cut(s) | 339 |
| BsgI | GTGCAG | 1 cut(s) | 681 |
| BshFI | GGCC | 2 cut(s) | 556, 1647 |
| BshNI | GGYRCC | 1 cut(s) | 112 |
| BsiHKAI | GWGCWC | 4 cut(s) | 350, 1011, 1127, 2090 |
| BslFI | GGGAC | 3 cut(s) | 582, 1238, 1403 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 122, 310, 818, 845, 872, 1018, 1678 |
| BsmAI | GTCTC | 4 cut(s) | 991, 1835, 1903, 1934 |
| BsmFI | GGGAC | 3 cut(s) | 582, 1238, 1403 |
| BsmI | GAATGC | 1 cut(s) | 1180 |
| BsnI | GGCC | 2 cut(s) | 556, 1647 |
| Bso31I | GGTCTC | 1 cut(s) | 1934 |
| Bsp1286I | GDGCHC | 4 cut(s) | 350, 1011, 1127, 2090 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 33, 1593, 1895, 1942 |
| BspACI | CCGC | 2 cut(s) | 375, 628 |
| BspANI | GGCC | 2 cut(s) | 556, 1647 |
| BspCNI | CTCAG | 6 cut(s) | 46, 625, 877, 1300, 1585, 1955 |
| BspHI | TCATGA | 2 cut(s) | 193, 1087 |
| BspLI | GGNNCC | 6 cut(s) | 114, 127, 336, 1515, 1653, 2063 |
| BspMAI | CTGCAG | 1 cut(s) | 652 |
| BspPI | GGATC | 9 cut(s) | 60, 120, 133, 616, 695, 993, 1468, 1590, 1607 |
| BspT107I | GGYRCC | 1 cut(s) | 112 |
| BspTNI | GGTCTC | 1 cut(s) | 1934 |
| BsrDI | GCAATG | 3 cut(s) | 114, 406, 2101 |
| BsrI | ACTGG | 1 cut(s) | 419 |
| BssECI | CCNNGG | 2 cut(s) | 102, 557 |
| BssNI | GRCGYC | 1 cut(s) | 1217 |
| BssT1I | CCWWGG | 1 cut(s) | 557 |
| Bst2UI | CCWGG | 3 cut(s) | 244, 548, 1649 |
| Bst4CI | ACNGT | 6 cut(s) | 117, 275, 744, 771, 1035, 1107 |
| Bst6I | CTCTTC | 1 cut(s) | 924 |
| BstACI | GRCGYC | 1 cut(s) | 1217 |
| BstBAI | YACGTR | 1 cut(s) | 538 |
| BstC8I | GCNNGC | 4 cut(s) | 1044, 1245, 1645, 1939 |
| BstDEI | CTNAG | 9 cut(s) | 33, 612, 885, 1287, 1593, 1796, 1895, 1942, 2055 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1676 |
| BstF5I | GGATG | 4 cut(s) | 140, 239, 1483, 1765 |
| BstHHI | GCGC | 1 cut(s) | 1209 |
| BstMAI | GTCTC | 4 cut(s) | 991, 1835, 1903, 1934 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1943 |
| BstNI | CCWGG | 3 cut(s) | 244, 548, 1649 |
| BstNSI | RCATGY | 2 cut(s) | 1007, 1046 |
| BstSCI | CCNGG | 3 cut(s) | 242, 546, 1647 |
| BstSFI | CTRYAG | 2 cut(s) | 648, 1059 |
| BstSLI | GKGCMC | 1 cut(s) | 1011 |
| BstV1I | GCAGC | 3 cut(s) | 535, 718, 1715 |
| BstX2I | RGATCY | 7 cut(s) | 65, 125, 608, 985, 1460, 1612, 1760 |
| BstYI | RGATCY | 7 cut(s) | 65, 125, 608, 985, 1460, 1612, 1760 |
| BsuRI | GGCC | 2 cut(s) | 556, 1647 |
| BtrI | CACGTC | 1 cut(s) | 790 |
| BtsCI | GGATG | 4 cut(s) | 140, 239, 1483, 1765 |
| BtsI | GCAGTG | 1 cut(s) | 296 |
| BtsIMutI | CAGTG | 1 cut(s) | 296 |
| Cac8I | GCNNGC | 4 cut(s) | 1044, 1245, 1645, 1939 |
| CciI | TCATGA | 2 cut(s) | 193, 1087 |
| CfoI | GCGC | 1 cut(s) | 1209 |
| Csp6I | GTAC | 2 cut(s) | 921, 1567 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 546, 581 |
| CviQI | GTAC | 2 cut(s) | 921, 1567 |
| DdeI | CTNAG | 9 cut(s) | 33, 612, 885, 1287, 1593, 1796, 1895, 1942, 2055 |
| Eam1104I | CTCTTC | 1 cut(s) | 924 |
| EarI | CTCTTC | 1 cut(s) | 924 |
| Ecl136II | GAGCTC | 1 cut(s) | 348 |
| Eco130I | CCWWGG | 1 cut(s) | 557 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco31I | GGTCTC | 1 cut(s) | 1934 |
| Eco53kI | GAGCTC | 1 cut(s) | 348 |
| EcoICRI | GAGCTC | 1 cut(s) | 348 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1676 |
| EcoRI | GAATTC | 1 cut(s) | 529 |
| EcoRII | CCWGG | 3 cut(s) | 242, 546, 1647 |
| EcoT14I | CCWWGG | 1 cut(s) | 557 |
| EcoT22I | ATGCAT | 3 cut(s) | 1044, 1180, 1548 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| ErhI | CCWWGG | 1 cut(s) | 557 |
| FaqI | GGGAC | 3 cut(s) | 582, 1238, 1403 |
| FauI | CCCGC | 1 cut(s) | 368 |
| FbaI | TGATCA | 2 cut(s) | 721, 1603 |
| Fnu4HI | GCNGC | 4 cut(s) | 524, 628, 707, 1704 |
| FokI | GGATG | 4 cut(s) | 127, 226, 1490, 1752 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 4 cut(s) | 524, 628, 707, 1704 |
| FspBI | CTAG | 5 cut(s) | 171, 1248, 1598, 1610, 1845 |
| GlaI | GCGC | 1 cut(s) | 1208 |
| GluI | GCNGC | 4 cut(s) | 524, 628, 707, 1704 |
| GsaI | CCCAGC | 1 cut(s) | 343 |
| GsuI | CTGGAG | 1 cut(s) | 1013 |
| HaeIII | GGCC | 2 cut(s) | 556, 1647 |
| HhaI | GCGC | 1 cut(s) | 1209 |
| Hin1I | GRCGYC | 1 cut(s) | 1217 |
| Hin6I | GCGC | 1 cut(s) | 1207 |
| HinP1I | GCGC | 1 cut(s) | 1207 |
| HphI | GGTGA | 4 cut(s) | 45, 536, 1944, 2000 |
| Hpy166II | GTNNAC | 2 cut(s) | 1009, 1952 |
| Hpy188I | TCNGA | 5 cut(s) | 217, 366, 895, 1460, 1669 |
| Hpy8I | GTNNAC | 2 cut(s) | 1009, 1952 |
| Hpy99I | CGWCG | 1 cut(s) | 794 |
| HpyAV | CCTTC | 6 cut(s) | 154, 222, 462, 1367, 1813, 1868 |
| HpyCH4III | ACNGT | 6 cut(s) | 117, 275, 744, 771, 1035, 1107 |
| HpyCH4IV | ACGT | 4 cut(s) | 537, 789, 843, 1217 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1943 |
| HpyF3I | CTNAG | 9 cut(s) | 33, 612, 885, 1287, 1593, 1796, 1895, 1942, 2055 |
| HpySE526I | ACGT | 4 cut(s) | 537, 789, 843, 1217 |
| Hsp92I | GRCGYC | 1 cut(s) | 1217 |
| HspAI | GCGC | 1 cut(s) | 1207 |
| Ksp22I | TGATCA | 2 cut(s) | 721, 1603 |
| LmnI | GCTCC | 3 cut(s) | 340, 1573, 1810 |
| Lsp1109I | GCAGC | 3 cut(s) | 535, 718, 1715 |
| LweI | GCATC | 6 cut(s) | 1029, 1258, 1354, 1533, 1876, 2041 |
| MaeI | CTAG | 5 cut(s) | 171, 1248, 1598, 1610, 1845 |
| MaeII | ACGT | 4 cut(s) | 537, 789, 843, 1217 |
| MaeIII | GTNAC | 2 cut(s) | 899, 1829 |
| MboII | GAAGA | 7 cut(s) | 90, 941, 1082, 1277, 1702, 1895, 1967 |
| MflI | RGATCY | 7 cut(s) | 65, 125, 608, 985, 1460, 1612, 1760 |
| MhlI | GDGCHC | 4 cut(s) | 350, 1011, 1127, 2090 |
| MlyI | GAGTC | 2 cut(s) | 1738, 1743 |
| MmeI | TCCRAC | 4 cut(s) | 799, 826, 853, 915 |
| Mph1103I | ATGCAT | 3 cut(s) | 1044, 1180, 1548 |
| MseI | TTAA | 7 cut(s) | 588, 716, 915, 963, 1181, 1625, 2006 |
| MslI | CAYNNNNRTG | 4 cut(s) | 58, 198, 456, 1047 |
| MspA1I | CMGCKG | 2 cut(s) | 375, 884 |
| MspR9I | CCNGG | 3 cut(s) | 244, 548, 1649 |
| Mva1269I | GAATGC | 1 cut(s) | 1180 |
| MvaI | CCWGG | 3 cut(s) | 244, 548, 1649 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1943 |
| NlaIV | GGNNCC | 6 cut(s) | 114, 127, 336, 1515, 1653, 2063 |
| NmeAIII | GCCGAG | 1 cut(s) | 83 |
| NsiI | ATGCAT | 3 cut(s) | 1044, 1180, 1548 |
| NspI | RCATGY | 2 cut(s) | 1007, 1046 |
| PaeI | GCATGC | 1 cut(s) | 1046 |
| PagI | TCATGA | 2 cut(s) | 193, 1087 |
| PctI | GAATGC | 1 cut(s) | 1180 |
| PfeI | GAWTC | 8 cut(s) | 212, 574, 938, 1391, 1429, 1664, 1711, 1972 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 818, 872 |
| PkrI | GCNGC | 4 cut(s) | 525, 629, 708, 1705 |
| PleI | GAGTC | 2 cut(s) | 1737, 1742 |
| PpsI | GAGTC | 2 cut(s) | 1737, 1742 |
| Ppu21I | YACGTR | 1 cut(s) | 538 |
| PshBI | ATTAAT | 1 cut(s) | 1181 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp124BI | GAGCTC | 1 cut(s) | 350 |
| Psp6I | CCWGG | 3 cut(s) | 242, 546, 1647 |
| PspFI | CCCAGC | 1 cut(s) | 339 |
| PspGI | CCWGG | 3 cut(s) | 242, 546, 1647 |
| PspN4I | GGNNCC | 6 cut(s) | 114, 127, 336, 1515, 1653, 2063 |
| PstI | CTGCAG | 1 cut(s) | 652 |
| PsuI | RGATCY | 7 cut(s) | 65, 125, 608, 985, 1460, 1612, 1760 |
| PvuII | CAGCTG | 1 cut(s) | 884 |
| RsaI | GTAC | 2 cut(s) | 922, 1568 |
| RsaNI | GTAC | 2 cut(s) | 921, 1567 |
| RseI | CAYNNNNRTG | 4 cut(s) | 58, 198, 456, 1047 |
| SacI | GAGCTC | 1 cut(s) | 350 |
| SaqAI | TTAA | 7 cut(s) | 588, 716, 915, 963, 1181, 1625, 2006 |
| SatI | GCNGC | 4 cut(s) | 524, 628, 707, 1704 |
| SchI | GAGTC | 2 cut(s) | 1738, 1743 |
| ScrFI | CCNGG | 3 cut(s) | 244, 548, 1649 |
| SduI | GDGCHC | 4 cut(s) | 350, 1011, 1127, 2090 |
| SfaNI | GCATC | 6 cut(s) | 1029, 1258, 1354, 1533, 1876, 2041 |
| SfcI | CTRYAG | 2 cut(s) | 648, 1059 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 58, 198, 456, 1047 |
| SphI | GCATGC | 1 cut(s) | 1046 |
| SsiI | CCGC | 2 cut(s) | 375, 628 |
| SspMI | CTAG | 5 cut(s) | 171, 1248, 1598, 1610, 1845 |
| SstI | GAGCTC | 1 cut(s) | 350 |
| StyD4I | CCNGG | 3 cut(s) | 242, 546, 1647 |
| StyI | CCWWGG | 1 cut(s) | 557 |
| TaaI | ACNGT | 6 cut(s) | 117, 275, 744, 771, 1035, 1107 |
| TaiI | ACGT | 4 cut(s) | 540, 792, 846, 1220 |
| TaqI | TCGA | 2 cut(s) | 1068, 1732 |
| TauI | GCSGC | 1 cut(s) | 630 |
| TfiI | GAWTC | 8 cut(s) | 212, 574, 938, 1391, 1429, 1664, 1711, 1972 |
| Tru1I | TTAA | 7 cut(s) | 588, 716, 915, 963, 1181, 1625, 2006 |
| Tru9I | TTAA | 7 cut(s) | 588, 716, 915, 963, 1181, 1625, 2006 |
| TscAI | CASTG | 1 cut(s) | 296 |
| TseI | GCWGC | 3 cut(s) | 523, 706, 1703 |
| TspRI | CASTG | 1 cut(s) | 296 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 818, 872 |
| VneI | GTGCAC | 1 cut(s) | 1007 |
| VspI | ATTAAT | 1 cut(s) | 1181 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1676 |
| XapI | RAATTY | 5 cut(s) | 404, 529, 664, 712, 1137 |
| XceI | RCATGY | 2 cut(s) | 1007, 1046 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2075 |
| XspI | CTAG | 5 cut(s) | 171, 1248, 1598, 1610, 1845 |
| ZraI | GACGTC | 1 cut(s) | 1218 |
| Zsp2I | ATGCAT | 3 cut(s) | 1044, 1180, 1548 |