Rorug06G0281700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017073
Physical Location & Seq
Reverse (-)
42934962 .. 42937095
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0281700.1

Sequence Viewer

Length: 648 bp
ATGATTAGTGGGGCTTTAGCTTCAGCTTCCCCACAAACTTTTTCTTCTTCTTCTTCATCATCTCTCGTATCTAAACCCAAAACCAGCTGTTACAGCTATGCTTCCACCTCTGTCAGTGTTGCCAAGCTAAGCTTCTTGGATCTGAAGCTTGAAAGCTTTGGACTTTATGGAGTAAAGGGGTCAAGGAGAGGCAGCAGAGTACACTGCAATACCGGACCTGGTGAGGGTGATAGCAAGAGTGTTCTGGATGCCTTTTTCTTGGGGAGAGCTCTAGCCGAAGCGCTAAATGAGCGAATTGAGTCCAGTGTCGGTGAGTTTTTGAGTACAATTGGTAGGCTGCAAGCTGAGCAACAAAAGCAAGTAGAGGACTTTCAGGCAGACGTACTGGACAGAGCCAAGAAAGCTAAAGAGAAAGCAGCACGTGAGACTGCAGAGGCACGAGGAATTGTTTCAAAATCTACTACAGAAAGTGTAACACCAGTCACCGTCACCAATGGTGTTTCGCCAATAACTTCAACAACCACCACCACTGTTGACACTCCTGCTGTCAGTCAACCTTCATCGTCTGAGCCAACCCCCACAATAACTGAGAATGAACCAGGTCCTGCTGACGAGGATACATCTTCAGAGGTGCCAATTGATGATTGA

Protein Analysis

215

Amino Acids

22.51

Weight (kDa)

4.9

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6825 PF20711 78 - 179 5.5e-34 Family of unknown function (DUF6825)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32450
fragaria_vesca FvH4_1g18840 FvH4_2g29640
rosa_chinensis RchiOBHm_Chr6g0298611
rosa_laevigata RLG00000011499
rosa_multiflora Rmu_sc0004500.1_g000016
rosa_roxburghii Rroxscaffold_7G00169490
rosa_rugosa Rorug06G0281700
rosa_samantha Rh6AG393100 Rh6BG400800 Rh6CG406800 Rh6DG393400
rosa_wichuraiana Rw6G034360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AclWI GGATC 1 cut(s) 147
AcuI CTGAAG 3 cut(s) 6, 164, 609
AcvI CACGTG 1 cut(s) 422
AfaI GTAC 3 cut(s) 201, 325, 384
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 152, 453, 516
AjnI CCWGG 2 cut(s) 217, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 147
AlwNI CAGNNNCTG 1 cut(s) 605
Aor51HI AGCGCT 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 192, 337, 416
Asp700I GAANNNNTTC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 215, 602
AsuHPI GGTGA 5 cut(s) 233, 239, 323, 475, 481
AvaII GGWCC 2 cut(s) 215, 602
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 204, 324, 428
BciT130I CCWGG 2 cut(s) 219, 600
BciVI GTATCC 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 429, 462
BfoI RGCGCY 1 cut(s) 284
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 3 cut(s) 193, 338, 417
BlpI GCTNAGC 2 cut(s) 128, 345
BlsI GCNGC 3 cut(s) 194, 339, 418
Bme1390I CCNGG 2 cut(s) 219, 600
Bme18I GGWCC 2 cut(s) 215, 602
BmgT120I GGNCC 2 cut(s) 215, 602
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 2 cut(s) 219, 600
BmsI GCATC 1 cut(s) 238
Bpu1102I GCTNAGC 2 cut(s) 128, 345
BsaAI YACGTR 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 303, 390, 479
BseBI CCWGG 2 cut(s) 219, 600
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 3 cut(s) 336, 558, 579
BseNI ACTGG 3 cut(s) 303, 390, 479
BseXI GCAGC 3 cut(s) 204, 324, 428
BshNI GGYRCC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 2 cut(s) 128, 345
BspCNI CTCAG 3 cut(s) 337, 559, 580
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 631
BsrI ACTGG 3 cut(s) 303, 390, 479
BssMI GATC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 219, 600
Bst4CI ACNGT 2 cut(s) 487, 532
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 4 cut(s) 128, 345, 567, 588
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 93, 289, 346, 355, 401
BstNI CCWGG 2 cut(s) 219, 600
BstSCI CCNGG 2 cut(s) 217, 598
BstSFI CTRYAG 2 cut(s) 429, 462
BstV1I GCAGC 3 cut(s) 204, 324, 428
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 121, 202, 310, 528
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 215, 602
CsiI ACCWGGT 2 cut(s) 217, 598
Csp6I GTAC 3 cut(s) 200, 324, 383
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviQI GTAC 3 cut(s) 200, 324, 383
DdeI CTNAG 4 cut(s) 128, 345, 567, 588
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 215, 602
Eco47III AGCGCT 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 3 cut(s) 6, 164, 609
Eco72I CACGTG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 217, 598
EcoT38I GRGCYC 1 cut(s) 271
FaiI YATR 2 cut(s) 99, 168
FalI AAGNNNNNCTT 2 cut(s) 116, 148
Fnu4HI GCNGC 3 cut(s) 193, 338, 417
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 3 cut(s) 193, 338, 417
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 193, 338, 417
HaeII RGCGCY 1 cut(s) 284
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 283
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 535, 554
HindII GTYRAC 2 cut(s) 535, 554
HindIII AAGCTT 3 cut(s) 130, 146, 154
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 213
HphI GGTGA 5 cut(s) 233, 239, 323, 475, 481
Hpy166II GTNNAC 3 cut(s) 202, 535, 554
Hpy188I TCNGA 3 cut(s) 144, 568, 628
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 3 cut(s) 202, 535, 554
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 2 cut(s) 487, 532
HpyCH4IV ACGT 2 cut(s) 381, 421
HpyCH4V TGCA 3 cut(s) 207, 340, 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 289, 346, 355, 401
HpyF3I CTNAG 4 cut(s) 128, 345, 567, 588
HpySE526I ACGT 2 cut(s) 381, 421
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 204, 324, 428
LweI GCATC 1 cut(s) 238
MabI ACCWGGT 2 cut(s) 217, 598
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 381, 421
MaeIII GTNAC 4 cut(s) 89, 472, 481, 487
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 5 cut(s) 36, 39, 42, 45, 615
MfeI CAATTG 2 cut(s) 327, 636
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 4 cut(s) 294, 327, 444, 636
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 8 cut(s) 118, 182, 217, 358, 427, 434, 607, 622
MroXI GAANNNNTTC 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 219, 600
MunI CAATTG 2 cut(s) 327, 636
MvaI CCWGG 2 cut(s) 219, 600
MwoI GCNNNNNNNGC 5 cut(s) 93, 289, 346, 355, 401
NdeII GATC 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 481, 487
PdmI GAANNNNTTC 1 cut(s) 448
PkrI GCNGC 3 cut(s) 194, 339, 418
PleI GAGTC 1 cut(s) 307
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 422
PpuMI RGGWCCY 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 217, 598
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 2 cut(s) 217, 598
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 2 cut(s) 215, 602
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 3 cut(s) 201, 325, 384
RsaNI GTAC 3 cut(s) 200, 324, 383
SacI GAGCTC 1 cut(s) 271
SatI GCNGC 3 cut(s) 193, 338, 417
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 215, 602
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 219, 600
SduI GDGCHC 1 cut(s) 271
SexAI ACCWGGT 2 cut(s) 217, 598
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 429, 462
SinI GGWCC 2 cut(s) 215, 602
Sse9I AATT 4 cut(s) 294, 327, 444, 636
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 217, 598
TaaI ACNGT 2 cut(s) 487, 532
TaiI ACGT 2 cut(s) 384, 424
TasI AATT 4 cut(s) 294, 327, 444, 636
TatI WGTACW 2 cut(s) 199, 323
TscAI CASTG 4 cut(s) 121, 209, 310, 535
TseFI GTSAC 2 cut(s) 481, 487
TseI GCWGC 3 cut(s) 192, 337, 416
Tsp45I GTSAC 2 cut(s) 481, 487
TspDTI ATGAA 3 cut(s) 45, 549, 609
TspRI CASTG 4 cut(s) 121, 209, 310, 535
VpaK11BI GGWCC 2 cut(s) 215, 602
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.