Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32450 |
| fragaria_vesca | FvH4_1g18840 FvH4_2g29640 |
| rosa_chinensis | RchiOBHm_Chr6g0298611 |
| rosa_laevigata | RLG00000011499 |
| rosa_multiflora | Rmu_sc0004500.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00169490 |
| rosa_rugosa | Rorug06G0281700 |
| rosa_samantha | Rh6AG393100 Rh6BG400800 Rh6CG406800 Rh6DG393400 |
| rosa_wichuraiana | Rw6G034360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 702 |
| AatII | GACGTC | 1 cut(s) | 1409 |
| Acc36I | ACCTGC | 1 cut(s) | 408 |
| AccI | GTMKAC | 1 cut(s) | 493 |
| AciI | CCGC | 2 cut(s) | 284, 1239 |
| AclWI | GGATC | 6 cut(s) | 48, 589, 1657, 1779, 1796, 1809 |
| AcsI | RAATTY | 3 cut(s) | 502, 685, 1326 |
| AcuI | CTGAAG | 1 cut(s) | 1202 |
| AcvI | CACGTG | 1 cut(s) | 1201 |
| AcyI | GRCGYC | 1 cut(s) | 1406 |
| AfaI | GTAC | 2 cut(s) | 1111, 1315 |
| AflIII | ACRYGT | 1 cut(s) | 760 |
| AjnI | CCWGG | 9 cut(s) | 215, 519, 786, 813, 921, 948, 975, 1002, 1056 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 197, 229 |
| Alw21I | GWGCWC | 3 cut(s) | 323, 1200, 2279 |
| Alw26I | GTCTC | 3 cut(s) | 1302, 2024, 2092 |
| Alw44I | GTGCAC | 1 cut(s) | 1196 |
| AlwI | GGATC | 6 cut(s) | 48, 589, 1657, 1779, 1796, 1809 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1294 |
| Ama87I | CYCGRG | 3 cut(s) | 840, 867, 893 |
| AoxI | GGCC | 2 cut(s) | 428, 1834 |
| ApaLI | GTGCAC | 1 cut(s) | 1196 |
| ApeKI | GCWGC | 5 cut(s) | 448, 679, 1189, 1570, 1892 |
| ApoI | RAATTY | 3 cut(s) | 502, 685, 1326 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 362, 394 |
| AseI | ATTAAT | 1 cut(s) | 1370 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 664 |
| AspA2I | CCTAGG | 1 cut(s) | 530 |
| AspLEI | GCGC | 1 cut(s) | 1398 |
| AspS9I | GGNCC | 3 cut(s) | 428, 1210, 1703 |
| AsuC2I | CCSGG | 4 cut(s) | 841, 842, 868, 869 |
| AsuHPI | GGTGA | 3 cut(s) | 509, 2133, 2189 |
| AvaI | CYCGRG | 3 cut(s) | 840, 867, 893 |
| AvaII | GGWCC | 2 cut(s) | 1210, 1703 |
| AvrII | CCTAGG | 1 cut(s) | 530 |
| BaeGI | GKGCMC | 1 cut(s) | 1200 |
| BamHI | GGATCC | 1 cut(s) | 1801 |
| BanII | GRGCYC | 2 cut(s) | 310, 323 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 652, 684 |
| BbrPI | CACGTG | 1 cut(s) | 1201 |
| BbsI | GAAGAC | 1 cut(s) | 2111 |
| Bbv12I | GWGCWC | 3 cut(s) | 323, 1200, 2279 |
| BbvCI | CCTCAGC | 2 cut(s) | 1074, 1557 |
| BbvI | GCAGC | 5 cut(s) | 460, 691, 1201, 1557, 1904 |
| BccI | CCATC | 3 cut(s) | 1469, 2108, 2265 |
| BceAI | ACGGC | 2 cut(s) | 45, 2284 |
| BciT130I | CCWGG | 9 cut(s) | 217, 521, 788, 815, 923, 950, 977, 1004, 1058 |
| BclI | TGATCA | 2 cut(s) | 1422, 1792 |
| BcnI | CCSGG | 4 cut(s) | 841, 842, 868, 869 |
| BcoDI | GTCTC | 3 cut(s) | 1302, 2024, 2092 |
| BfaI | CTAG | 6 cut(s) | 464, 479, 531, 539, 1787, 2034 |
| BfmI | CTRYAG | 3 cut(s) | 232, 621, 1653 |
| BfuAI | ACCTGC | 1 cut(s) | 408 |
| BglII | AGATCT | 1 cut(s) | 1949 |
| BisI | GCNGC | 5 cut(s) | 449, 680, 1190, 1571, 1893 |
| BlnI | CCTAGG | 1 cut(s) | 530 |
| BlpI | GCTNAGC | 4 cut(s) | 40, 1782, 2084, 2131 |
| BlsI | GCNGC | 5 cut(s) | 450, 681, 1191, 1572, 1894 |
| Bme18I | GGWCC | 2 cut(s) | 1210, 1703 |
| BmeT110I | CYCGRG | 3 cut(s) | 840, 867, 893 |
| BmgT120I | GGNCC | 3 cut(s) | 428, 1210, 1703 |
| BmiI | GGNNCC | 5 cut(s) | 96, 309, 1704, 1803, 2252 |
| BmsI | GCATC | 8 cut(s) | 116, 221, 1218, 1447, 1543, 1722, 2065, 2230 |
| BpiI | GAAGAC | 1 cut(s) | 2111 |
| Bpu10I | CCTNAGC | 3 cut(s) | 168, 1074, 1557 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 40, 1782, 2084, 2131 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| BpuMI | CCSGG | 4 cut(s) | 841, 842, 868, 869 |
| Bsa29I | ATCGAT | 2 cut(s) | 1464, 2055 |
| BsaAI | YACGTR | 1 cut(s) | 1201 |
| BsaHI | GRCGYC | 1 cut(s) | 1406 |
| Bse1I | ACTGG | 2 cut(s) | 328, 392 |
| Bse3DI | GCAATG | 2 cut(s) | 96, 2290 |
| BseBI | CCWGG | 9 cut(s) | 217, 521, 788, 815, 923, 950, 977, 1004, 1058 |
| BseCI | ATCGAT | 2 cut(s) | 1464, 2055 |
| BseGI | GGATG | 4 cut(s) | 122, 212, 1672, 1954 |
| BseMI | GCAATG | 2 cut(s) | 96, 2290 |
| BseMII | CTCAG | 9 cut(s) | 54, 159, 180, 599, 1065, 1490, 1548, 1773, 2145 |
| BseNI | ACTGG | 2 cut(s) | 328, 392 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseSI | GKGCMC | 1 cut(s) | 1200 |
| BseXI | GCAGC | 5 cut(s) | 460, 691, 1201, 1557, 1904 |
| BshFI | GGCC | 2 cut(s) | 430, 1836 |
| BshVI | ATCGAT | 2 cut(s) | 1464, 2055 |
| BsiHKAI | GWGCWC | 3 cut(s) | 323, 1200, 2279 |
| BsiHKCI | CYCGRG | 3 cut(s) | 840, 867, 893 |
| BsiSI | CCGG | 2 cut(s) | 841, 868 |
| BslFI | GGGAC | 3 cut(s) | 1427, 1592, 1716 |
| BsmAI | GTCTC | 3 cut(s) | 1302, 2024, 2092 |
| BsmFI | GGGAC | 3 cut(s) | 1427, 1592, 1716 |
| BsmI | GAATGC | 1 cut(s) | 1369 |
| BsnI | GGCC | 2 cut(s) | 430, 1836 |
| BsoBI | CYCGRG | 3 cut(s) | 840, 867, 893 |
| Bsp1286I | GDGCHC | 4 cut(s) | 310, 323, 1200, 2279 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 40, 1782, 2084, 2131 |
| BspACI | CCGC | 2 cut(s) | 284, 1239 |
| BspANI | GGCC | 2 cut(s) | 430, 1836 |
| BspCNI | CTCAG | 9 cut(s) | 53, 160, 181, 598, 1066, 1489, 1549, 1774, 2144 |
| BspDI | ATCGAT | 2 cut(s) | 1464, 2055 |
| BspHI | TCATGA | 1 cut(s) | 1276 |
| BspLI | GGNNCC | 5 cut(s) | 96, 309, 1704, 1803, 2252 |
| BspMI | ACCTGC | 1 cut(s) | 408 |
| BspPI | GGATC | 6 cut(s) | 48, 589, 1657, 1779, 1796, 1809 |
| BsrDI | GCAATG | 2 cut(s) | 96, 2290 |
| BsrI | ACTGG | 2 cut(s) | 328, 392 |
| BssNAI | GTATAC | 1 cut(s) | 494 |
| BssNI | GRCGYC | 1 cut(s) | 1406 |
| BssT1I | CCWWGG | 2 cut(s) | 84, 530 |
| Bst1107I | GTATAC | 1 cut(s) | 494 |
| Bst2UI | CCWGG | 9 cut(s) | 217, 521, 788, 815, 923, 950, 977, 1004, 1058 |
| Bst4CI | ACNGT | 8 cut(s) | 236, 248, 347, 717, 744, 1014, 1041, 1296 |
| Bst6I | CTCTTC | 1 cut(s) | 1113 |
| BstACI | GRCGYC | 1 cut(s) | 1406 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1195 |
| BstBAI | YACGTR | 1 cut(s) | 1201 |
| BstC8I | GCNNGC | 3 cut(s) | 1233, 1237, 1834 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1865 |
| BstF5I | GGATG | 4 cut(s) | 122, 212, 1672, 1954 |
| BstHHI | GCGC | 1 cut(s) | 1398 |
| BstMAI | GTCTC | 3 cut(s) | 1302, 2024, 2092 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 57, 149, 290, 1186, 1195 |
| BstNI | CCWGG | 9 cut(s) | 217, 521, 788, 815, 923, 950, 977, 1004, 1058 |
| BstNSI | RCATGY | 5 cut(s) | 764, 1196, 1235, 1239, 1288 |
| BstSFI | CTRYAG | 3 cut(s) | 232, 621, 1653 |
| BstSLI | GKGCMC | 1 cut(s) | 1200 |
| BstV1I | GCAGC | 5 cut(s) | 460, 691, 1201, 1557, 1904 |
| BstV2I | GAAGAC | 1 cut(s) | 2111 |
| BstX2I | RGATCY | 5 cut(s) | 53, 581, 1649, 1801, 1949 |
| BstYI | RGATCY | 5 cut(s) | 53, 581, 1649, 1801, 1949 |
| BstZ17I | GTATAC | 1 cut(s) | 494 |
| Bsu15I | ATCGAT | 2 cut(s) | 1464, 2055 |
| BsuRI | GGCC | 2 cut(s) | 430, 1836 |
| BsuTUI | ATCGAT | 2 cut(s) | 1464, 2055 |
| BtsCI | GGATG | 4 cut(s) | 122, 212, 1672, 1954 |
| BtsI | GCAGTG | 1 cut(s) | 269 |
| BtsIMutI | CAGTG | 3 cut(s) | 241, 269, 352 |
| BveI | ACCTGC | 1 cut(s) | 408 |
| Cac8I | GCNNGC | 3 cut(s) | 1233, 1237, 1834 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1294 |
| CciI | TCATGA | 1 cut(s) | 1276 |
| CfoI | GCGC | 1 cut(s) | 1398 |
| Cfr13I | GGNCC | 3 cut(s) | 428, 1210, 1703 |
| Cfr9I | CCCGGG | 2 cut(s) | 840, 867 |
| ClaI | ATCGAT | 2 cut(s) | 1464, 2055 |
| Csp6I | GTAC | 2 cut(s) | 1110, 1314 |
| CviQI | GTAC | 2 cut(s) | 1110, 1314 |
| DraI | TTTAAA | 3 cut(s) | 562, 690, 2196 |
| Eam1104I | CTCTTC | 1 cut(s) | 1113 |
| EarI | CTCTTC | 1 cut(s) | 1113 |
| Ecl136II | GAGCTC | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 2 cut(s) | 84, 530 |
| Eco24I | GRGCYC | 2 cut(s) | 310, 323 |
| Eco47I | GGWCC | 2 cut(s) | 1210, 1703 |
| Eco53kI | GAGCTC | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 1 cut(s) | 1202 |
| Eco72I | CACGTG | 1 cut(s) | 1201 |
| Eco88I | CYCGRG | 3 cut(s) | 840, 867, 893 |
| EcoICRI | GAGCTC | 1 cut(s) | 321 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1865 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1703 |
| EcoRI | GAATTC | 1 cut(s) | 502 |
| EcoRII | CCWGG | 9 cut(s) | 215, 519, 786, 813, 921, 948, 975, 1002, 1056 |
| EcoT14I | CCWWGG | 2 cut(s) | 84, 530 |
| EcoT22I | ATGCAT | 5 cut(s) | 214, 1233, 1237, 1369, 1737 |
| EcoT38I | GRGCYC | 2 cut(s) | 310, 323 |
| ErhI | CCWWGG | 2 cut(s) | 84, 530 |
| FaqI | GGGAC | 3 cut(s) | 1427, 1592, 1716 |
| FauI | CCCGC | 1 cut(s) | 1232 |
| FauNDI | CATATG | 2 cut(s) | 508, 553 |
| FbaI | TGATCA | 2 cut(s) | 1422, 1792 |
| FblI | GTMKAC | 1 cut(s) | 493 |
| Fnu4HI | GCNGC | 5 cut(s) | 449, 680, 1190, 1571, 1893 |
| FokI | GGATG | 4 cut(s) | 109, 199, 1679, 1941 |
| FriOI | GRGCYC | 2 cut(s) | 310, 323 |
| Fsp4HI | GCNGC | 5 cut(s) | 449, 680, 1190, 1571, 1893 |
| FspBI | CTAG | 6 cut(s) | 464, 479, 531, 539, 1787, 2034 |
| GlaI | GCGC | 1 cut(s) | 1397 |
| GluI | GCNGC | 5 cut(s) | 449, 680, 1190, 1571, 1893 |
| HaeIII | GGCC | 2 cut(s) | 430, 1836 |
| HapII | CCGG | 2 cut(s) | 841, 868 |
| HhaI | GCGC | 1 cut(s) | 1398 |
| Hin1I | GRCGYC | 1 cut(s) | 1406 |
| Hin6I | GCGC | 1 cut(s) | 1396 |
| HinP1I | GCGC | 1 cut(s) | 1396 |
| HinfI | GANTC | 8 cut(s) | 163, 185, 547, 1580, 1853, 1918, 1923, 2161 |
| HpaII | CCGG | 2 cut(s) | 841, 868 |
| HphI | GGTGA | 3 cut(s) | 509, 2133, 2189 |
| Hpy166II | GTNNAC | 4 cut(s) | 494, 1198, 1204, 2141 |
| Hpy8I | GTNNAC | 4 cut(s) | 494, 1198, 1204, 2141 |
| Hpy99I | CGWCG | 1 cut(s) | 1508 |
| HpyAV | CCTTC | 6 cut(s) | 136, 195, 435, 1556, 2002, 2057 |
| HpyCH4III | ACNGT | 8 cut(s) | 236, 248, 347, 717, 744, 1014, 1041, 1296 |
| HpyCH4IV | ACGT | 2 cut(s) | 1200, 1406 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 57, 149, 290, 1186, 1195 |
| HpySE526I | ACGT | 2 cut(s) | 1200, 1406 |
| Hsp92I | GRCGYC | 1 cut(s) | 1406 |
| HspAI | GCGC | 1 cut(s) | 1396 |
| Ksp22I | TGATCA | 2 cut(s) | 1422, 1792 |
| LmnI | GCTCC | 4 cut(s) | 94, 313, 1031, 1762 |
| Lsp1109I | GCAGC | 5 cut(s) | 460, 691, 1201, 1557, 1904 |
| LweI | GCATC | 8 cut(s) | 116, 221, 1218, 1447, 1543, 1722, 2065, 2230 |
| MaeI | CTAG | 6 cut(s) | 464, 479, 531, 539, 1787, 2034 |
| MaeII | ACGT | 2 cut(s) | 1200, 1406 |
| MaeIII | GTNAC | 4 cut(s) | 647, 1088, 1290, 2018 |
| MflI | RGATCY | 5 cut(s) | 53, 581, 1649, 1801, 1949 |
| MhlI | GDGCHC | 4 cut(s) | 310, 323, 1200, 2279 |
| MluCI | AATT | 8 cut(s) | 340, 502, 685, 1326, 1399, 1621, 1886, 2211 |
| MlyI | GAGTC | 2 cut(s) | 1927, 1932 |
| Mph1103I | ATGCAT | 5 cut(s) | 214, 1233, 1237, 1369, 1737 |
| MroXI | GAANNNNTTC | 1 cut(s) | 664 |
| MseI | TTAA | 8 cut(s) | 561, 689, 1104, 1152, 1370, 1518, 1814, 2195 |
| MspA1I | CMGCKG | 3 cut(s) | 1073, 1225, 1798 |
| MspI | CCGG | 2 cut(s) | 841, 868 |
| Mva1269I | GAATGC | 1 cut(s) | 1369 |
| MvaI | CCWGG | 9 cut(s) | 217, 521, 788, 815, 923, 950, 977, 1004, 1058 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 57, 149, 290, 1186, 1195 |
| NciI | CCSGG | 4 cut(s) | 841, 842, 868, 869 |
| NdeI | CATATG | 2 cut(s) | 508, 553 |
| NlaIV | GGNNCC | 5 cut(s) | 96, 309, 1704, 1803, 2252 |
| NsiI | ATGCAT | 5 cut(s) | 214, 1233, 1237, 1369, 1737 |
| NspI | RCATGY | 5 cut(s) | 764, 1196, 1235, 1239, 1288 |
| PaeI | GCATGC | 2 cut(s) | 1235, 1239 |
| PagI | TCATGA | 1 cut(s) | 1276 |
| PciI | ACATGT | 1 cut(s) | 760 |
| PctI | GAATGC | 1 cut(s) | 1369 |
| PdmI | GAANNNNTTC | 1 cut(s) | 664 |
| PfeI | GAWTC | 6 cut(s) | 163, 185, 547, 1580, 1853, 2161 |
| PkrI | GCNGC | 5 cut(s) | 450, 681, 1191, 1572, 1894 |
| PleI | GAGTC | 2 cut(s) | 1926, 1931 |
| PmaCI | CACGTG | 1 cut(s) | 1201 |
| PmlI | CACGTG | 1 cut(s) | 1201 |
| PpsI | GAGTC | 2 cut(s) | 1926, 1931 |
| Ppu21I | YACGTR | 1 cut(s) | 1201 |
| PpuMI | RGGWCCY | 1 cut(s) | 1703 |
| PscI | ACATGT | 1 cut(s) | 760 |
| PshBI | ATTAAT | 1 cut(s) | 1370 |
| PsiI | TTATAA | 1 cut(s) | 702 |
| Psp124BI | GAGCTC | 1 cut(s) | 323 |
| Psp5II | RGGWCCY | 1 cut(s) | 1703 |
| Psp6I | CCWGG | 9 cut(s) | 215, 519, 786, 813, 921, 948, 975, 1002, 1056 |
| PspCI | CACGTG | 1 cut(s) | 1201 |
| PspGI | CCWGG | 9 cut(s) | 215, 519, 786, 813, 921, 948, 975, 1002, 1056 |
| PspN4I | GGNNCC | 5 cut(s) | 96, 309, 1704, 1803, 2252 |
| PspPI | GGNCC | 3 cut(s) | 428, 1210, 1703 |
| PspPPI | RGGWCCY | 1 cut(s) | 1703 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1294 |
| PsuI | RGATCY | 5 cut(s) | 53, 581, 1649, 1801, 1949 |
| PvuII | CAGCTG | 3 cut(s) | 1073, 1225, 1798 |
| RsaI | GTAC | 2 cut(s) | 1111, 1315 |
| RsaNI | GTAC | 2 cut(s) | 1110, 1314 |
| SacI | GAGCTC | 1 cut(s) | 323 |
| SaqAI | TTAA | 8 cut(s) | 561, 689, 1104, 1152, 1370, 1518, 1814, 2195 |
| SatI | GCNGC | 5 cut(s) | 449, 680, 1190, 1571, 1893 |
| Sau96I | GGNCC | 3 cut(s) | 428, 1210, 1703 |
| SchI | GAGTC | 2 cut(s) | 1927, 1932 |
| SduI | GDGCHC | 4 cut(s) | 310, 323, 1200, 2279 |
| SfaNI | GCATC | 8 cut(s) | 116, 221, 1218, 1447, 1543, 1722, 2065, 2230 |
| SfcI | CTRYAG | 3 cut(s) | 232, 621, 1653 |
| SinI | GGWCC | 2 cut(s) | 1210, 1703 |
| SmaI | CCCGGG | 2 cut(s) | 842, 869 |
| SmiI | ATTTAAAT | 1 cut(s) | 690 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| SphI | GCATGC | 2 cut(s) | 1235, 1239 |
| Sse9I | AATT | 8 cut(s) | 340, 502, 685, 1326, 1399, 1621, 1886, 2211 |
| SsiI | CCGC | 2 cut(s) | 284, 1239 |
| SspI | AATATT | 1 cut(s) | 1217 |
| SspMI | CTAG | 6 cut(s) | 464, 479, 531, 539, 1787, 2034 |
| SstI | GAGCTC | 1 cut(s) | 323 |
| StyI | CCWWGG | 2 cut(s) | 84, 530 |
| SwaI | ATTTAAAT | 1 cut(s) | 690 |
| TaaI | ACNGT | 8 cut(s) | 236, 248, 347, 717, 744, 1014, 1041, 1296 |
| TaiI | ACGT | 2 cut(s) | 1203, 1409 |
| TaqI | TCGA | 3 cut(s) | 1464, 1921, 2055 |
| TasI | AATT | 8 cut(s) | 340, 502, 685, 1326, 1399, 1621, 1886, 2211 |
| TfiI | GAWTC | 6 cut(s) | 163, 185, 547, 1580, 1853, 2161 |
| Tru1I | TTAA | 8 cut(s) | 561, 689, 1104, 1152, 1370, 1518, 1814, 2195 |
| Tru9I | TTAA | 8 cut(s) | 561, 689, 1104, 1152, 1370, 1518, 1814, 2195 |
| TscAI | CASTG | 3 cut(s) | 241, 269, 352 |
| TseI | GCWGC | 5 cut(s) | 448, 679, 1189, 1570, 1892 |
| TspMI | CCCGGG | 2 cut(s) | 840, 867 |
| TspRI | CASTG | 3 cut(s) | 241, 269, 352 |
| VneI | GTGCAC | 1 cut(s) | 1196 |
| VpaK11BI | GGWCC | 2 cut(s) | 1210, 1703 |
| VspI | ATTAAT | 1 cut(s) | 1370 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1865 |
| XapI | RAATTY | 3 cut(s) | 502, 685, 1326 |
| XceI | RCATGY | 5 cut(s) | 764, 1196, 1235, 1239, 1288 |
| XmaI | CCCGGG | 2 cut(s) | 840, 867 |
| XmaJI | CCTAGG | 1 cut(s) | 530 |
| XmiI | GTMKAC | 1 cut(s) | 493 |
| XmnI | GAANNNNTTC | 1 cut(s) | 664 |
| XspI | CTAG | 6 cut(s) | 464, 479, 531, 539, 1787, 2034 |
| ZraI | GACGTC | 1 cut(s) | 1407 |
| Zsp2I | ATGCAT | 5 cut(s) | 214, 1233, 1237, 1369, 1737 |