Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32450 |
| fragaria_vesca | FvH4_1g18840 FvH4_2g29640 |
| rosa_chinensis | RchiOBHm_Chr6g0298611 |
| rosa_laevigata | RLG00000011499 |
| rosa_multiflora | Rmu_sc0004500.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00169490 |
| rosa_rugosa | Rorug06G0281700 |
| rosa_samantha | Rh6AG393100 Rh6BG400800 Rh6CG406800 Rh6DG393400 |
| rosa_wichuraiana | Rw6G034360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AatII | GACGTC | 1 cut(s) | 1247 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 818, 845, 899 |
| AciI | CCGC | 2 cut(s) | 375, 628 |
| AcsI | RAATTY | 4 cut(s) | 404, 529, 712, 1164 |
| AcyI | GRCGYC | 1 cut(s) | 1244 |
| AfaI | GTAC | 2 cut(s) | 949, 1595 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 818, 845, 872, 899, 1453, 1705 |
| AflIII | ACRYGT | 1 cut(s) | 787 |
| AjiI | CACGTC | 1 cut(s) | 790 |
| AjnI | CCWGG | 3 cut(s) | 242, 546, 1674 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 224, 256 |
| Alw21I | GWGCWC | 2 cut(s) | 1154, 2117 |
| Alw26I | GTCTC | 4 cut(s) | 1018, 1862, 1930, 1961 |
| AoxI | GGCC | 2 cut(s) | 554, 1672 |
| ApeKI | GCWGC | 3 cut(s) | 523, 706, 1730 |
| ApoI | RAATTY | 4 cut(s) | 404, 529, 712, 1164 |
| AseI | ATTAAT | 1 cut(s) | 1208 |
| AspLEI | GCGC | 1 cut(s) | 1236 |
| AsuHPI | GGTGA | 3 cut(s) | 45, 1971, 2027 |
| BamHI | GGATCC | 1 cut(s) | 125 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 220, 252 |
| Bbv12I | GWGCWC | 2 cut(s) | 1154, 2117 |
| BbvCI | CCTCAGC | 1 cut(s) | 912 |
| BbvI | GCAGC | 3 cut(s) | 535, 718, 1742 |
| BccI | CCATC | 5 cut(s) | 575, 1337, 1946, 2099, 2103 |
| BceAI | ACGGC | 1 cut(s) | 57 |
| BciT130I | CCWGG | 3 cut(s) | 244, 548, 1676 |
| BclI | TGATCA | 1 cut(s) | 1630 |
| BcoDI | GTCTC | 4 cut(s) | 1018, 1862, 1930, 1961 |
| BfaI | CTAG | 5 cut(s) | 171, 1275, 1625, 1637, 1872 |
| BfmI | CTRYAG | 2 cut(s) | 648, 1086 |
| BglII | AGATCT | 1 cut(s) | 1787 |
| BisI | GCNGC | 4 cut(s) | 524, 628, 707, 1731 |
| BlpI | GCTNAGC | 4 cut(s) | 33, 1620, 1922, 1969 |
| BlsI | GCNGC | 4 cut(s) | 525, 629, 708, 1732 |
| Bme1390I | CCNGG | 3 cut(s) | 244, 548, 1676 |
| BmgBI | CACGTC | 1 cut(s) | 790 |
| BmiI | GGNNCC | 5 cut(s) | 127, 336, 1542, 1680, 2090 |
| BmrFI | CCNGG | 3 cut(s) | 244, 548, 1676 |
| BmrI | ACTGGG | 1 cut(s) | 413 |
| BmsI | GCATC | 6 cut(s) | 1056, 1285, 1381, 1560, 1903, 2068 |
| BmuI | ACTGGG | 1 cut(s) | 413 |
| BpmI | CTGGAG | 1 cut(s) | 1040 |
| Bpu10I | CCTNAGC | 2 cut(s) | 623, 912 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 33, 1620, 1922, 1969 |
| BsaAI | YACGTR | 1 cut(s) | 538 |
| BsaHI | GRCGYC | 1 cut(s) | 1244 |
| BsaI | GGTCTC | 1 cut(s) | 1961 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 557, 1452 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 818, 845, 872, 899, 1453, 1705 |
| Bse1I | ACTGG | 1 cut(s) | 419 |
| Bse3DI | GCAATG | 3 cut(s) | 114, 406, 2128 |
| BseBI | CCWGG | 3 cut(s) | 244, 548, 1676 |
| BseDI | CCNNGG | 3 cut(s) | 102, 557, 1452 |
| BseGI | GGATG | 4 cut(s) | 140, 239, 1510, 1792 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 818, 845, 872, 899, 1453, 1705 |
| BseMI | GCAATG | 3 cut(s) | 114, 406, 2128 |
| BseMII | CTCAG | 6 cut(s) | 47, 626, 903, 1328, 1611, 1983 |
| BseNI | ACTGG | 1 cut(s) | 419 |
| BseRI | GAGGAG | 2 cut(s) | 157, 1949 |
| BseXI | GCAGC | 3 cut(s) | 535, 718, 1742 |
| BseYI | CCCAGC | 1 cut(s) | 339 |
| BsgI | GTGCAG | 1 cut(s) | 681 |
| BshFI | GGCC | 2 cut(s) | 556, 1674 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1154, 2117 |
| BslFI | GGGAC | 3 cut(s) | 582, 1265, 1430 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 818, 845, 872, 899, 1453, 1705 |
| BsmAI | GTCTC | 4 cut(s) | 1018, 1862, 1930, 1961 |
| BsmFI | GGGAC | 3 cut(s) | 582, 1265, 1430 |
| BsmI | GAATGC | 1 cut(s) | 1207 |
| BsnI | GGCC | 2 cut(s) | 556, 1674 |
| Bso31I | GGTCTC | 1 cut(s) | 1961 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1154, 2117 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 33, 1620, 1922, 1969 |
| Bsp19I | CCATGG | 1 cut(s) | 1452 |
| BspACI | CCGC | 2 cut(s) | 375, 628 |
| BspANI | GGCC | 2 cut(s) | 556, 1674 |
| BspCNI | CTCAG | 6 cut(s) | 46, 625, 904, 1327, 1612, 1982 |
| BspHI | TCATGA | 2 cut(s) | 193, 1114 |
| BspLI | GGNNCC | 5 cut(s) | 127, 336, 1542, 1680, 2090 |
| BspMAI | CTGCAG | 1 cut(s) | 652 |
| BspTNI | GGTCTC | 1 cut(s) | 1961 |
| BsrDI | GCAATG | 3 cut(s) | 114, 406, 2128 |
| BsrI | ACTGG | 1 cut(s) | 419 |
| BssECI | CCNNGG | 3 cut(s) | 102, 557, 1452 |
| BssNI | GRCGYC | 1 cut(s) | 1244 |
| BssT1I | CCWWGG | 2 cut(s) | 557, 1452 |
| Bst2UI | CCWGG | 3 cut(s) | 244, 548, 1676 |
| Bst4CI | ACNGT | 6 cut(s) | 263, 275, 744, 771, 1062, 1134 |
| Bst6I | CTCTTC | 1 cut(s) | 951 |
| BstACI | GRCGYC | 1 cut(s) | 1244 |
| BstBAI | YACGTR | 1 cut(s) | 538 |
| BstC8I | GCNNGC | 5 cut(s) | 544, 1071, 1272, 1672, 1966 |
| BstDSI | CCRYGG | 1 cut(s) | 1452 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1703 |
| BstF5I | GGATG | 4 cut(s) | 140, 239, 1510, 1792 |
| BstHHI | GCGC | 1 cut(s) | 1236 |
| BstMAI | GTCTC | 4 cut(s) | 1018, 1862, 1930, 1961 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1970 |
| BstNI | CCWGG | 3 cut(s) | 244, 548, 1676 |
| BstNSI | RCATGY | 3 cut(s) | 1034, 1040, 1073 |
| BstSCI | CCNGG | 3 cut(s) | 242, 546, 1674 |
| BstSFI | CTRYAG | 2 cut(s) | 648, 1086 |
| BstV1I | GCAGC | 3 cut(s) | 535, 718, 1742 |
| BstX2I | RGATCY | 7 cut(s) | 65, 125, 608, 1012, 1487, 1639, 1787 |
| BstYI | RGATCY | 7 cut(s) | 65, 125, 608, 1012, 1487, 1639, 1787 |
| BsuRI | GGCC | 2 cut(s) | 556, 1674 |
| BtgI | CCRYGG | 1 cut(s) | 1452 |
| BtrI | CACGTC | 1 cut(s) | 790 |
| BtsCI | GGATG | 4 cut(s) | 140, 239, 1510, 1792 |
| BtsI | GCAGTG | 1 cut(s) | 296 |
| BtsIMutI | CAGTG | 2 cut(s) | 268, 296 |
| Cac8I | GCNNGC | 5 cut(s) | 544, 1071, 1272, 1672, 1966 |
| CciI | TCATGA | 2 cut(s) | 193, 1114 |
| CfoI | GCGC | 1 cut(s) | 1236 |
| Csp6I | GTAC | 2 cut(s) | 948, 1594 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 546, 581 |
| CviQI | GTAC | 2 cut(s) | 948, 1594 |
| Eam1104I | CTCTTC | 1 cut(s) | 951 |
| EarI | CTCTTC | 1 cut(s) | 951 |
| Eco130I | CCWWGG | 2 cut(s) | 557, 1452 |
| Eco31I | GGTCTC | 1 cut(s) | 1961 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1703 |
| EcoRI | GAATTC | 1 cut(s) | 529 |
| EcoRII | CCWGG | 3 cut(s) | 242, 546, 1674 |
| EcoT14I | CCWWGG | 2 cut(s) | 557, 1452 |
| EcoT22I | ATGCAT | 3 cut(s) | 1071, 1207, 1575 |
| ErhI | CCWWGG | 2 cut(s) | 557, 1452 |
| FaqI | GGGAC | 3 cut(s) | 582, 1265, 1430 |
| FauI | CCCGC | 1 cut(s) | 368 |
| FbaI | TGATCA | 1 cut(s) | 1630 |
| Fnu4HI | GCNGC | 4 cut(s) | 524, 628, 707, 1731 |
| FokI | GGATG | 4 cut(s) | 127, 226, 1517, 1779 |
| Fsp4HI | GCNGC | 4 cut(s) | 524, 628, 707, 1731 |
| FspBI | CTAG | 5 cut(s) | 171, 1275, 1625, 1637, 1872 |
| GlaI | GCGC | 1 cut(s) | 1235 |
| GluI | GCNGC | 4 cut(s) | 524, 628, 707, 1731 |
| GsaI | CCCAGC | 1 cut(s) | 343 |
| GsuI | CTGGAG | 1 cut(s) | 1040 |
| HaeIII | GGCC | 2 cut(s) | 556, 1674 |
| HhaI | GCGC | 1 cut(s) | 1236 |
| Hin1I | GRCGYC | 1 cut(s) | 1244 |
| Hin6I | GCGC | 1 cut(s) | 1234 |
| HinP1I | GCGC | 1 cut(s) | 1234 |
| HinfI | GANTC | 9 cut(s) | 212, 301, 574, 1418, 1691, 1738, 1756, 1761, 1999 |
| HphI | GGTGA | 3 cut(s) | 45, 1971, 2027 |
| Hpy166II | GTNNAC | 2 cut(s) | 1042, 1979 |
| Hpy188I | TCNGA | 5 cut(s) | 217, 366, 922, 1487, 1696 |
| Hpy8I | GTNNAC | 2 cut(s) | 1042, 1979 |
| Hpy99I | CGWCG | 1 cut(s) | 794 |
| HpyAV | CCTTC | 6 cut(s) | 154, 222, 462, 1394, 1840, 1895 |
| HpyCH4III | ACNGT | 6 cut(s) | 263, 275, 744, 771, 1062, 1134 |
| HpyCH4IV | ACGT | 4 cut(s) | 537, 789, 870, 1244 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1970 |
| HpySE526I | ACGT | 4 cut(s) | 537, 789, 870, 1244 |
| Hsp92I | GRCGYC | 1 cut(s) | 1244 |
| HspAI | GCGC | 1 cut(s) | 1234 |
| Ksp22I | TGATCA | 1 cut(s) | 1630 |
| LmnI | GCTCC | 2 cut(s) | 340, 1600 |
| Lsp1109I | GCAGC | 3 cut(s) | 535, 718, 1742 |
| LweI | GCATC | 6 cut(s) | 1056, 1285, 1381, 1560, 1903, 2068 |
| MaeI | CTAG | 5 cut(s) | 171, 1275, 1625, 1637, 1872 |
| MaeII | ACGT | 4 cut(s) | 537, 789, 870, 1244 |
| MaeIII | GTNAC | 2 cut(s) | 926, 1856 |
| MboII | GAAGA | 7 cut(s) | 90, 968, 1109, 1304, 1729, 1922, 1994 |
| MflI | RGATCY | 7 cut(s) | 65, 125, 608, 1012, 1487, 1639, 1787 |
| MhlI | GDGCHC | 2 cut(s) | 1154, 2117 |
| MluCI | AATT | 9 cut(s) | 404, 493, 503, 529, 601, 712, 1164, 1724, 2049 |
| MlyI | GAGTC | 2 cut(s) | 1765, 1770 |
| MmeI | TCCRAC | 4 cut(s) | 799, 826, 853, 942 |
| Mph1103I | ATGCAT | 3 cut(s) | 1071, 1207, 1575 |
| MseI | TTAA | 6 cut(s) | 716, 942, 990, 1208, 1652, 2033 |
| MslI | CAYNNNNRTG | 6 cut(s) | 58, 198, 456, 462, 1035, 1074 |
| MspA1I | CMGCKG | 2 cut(s) | 375, 911 |
| MspR9I | CCNGG | 3 cut(s) | 244, 548, 1676 |
| Mva1269I | GAATGC | 1 cut(s) | 1207 |
| MvaI | CCWGG | 3 cut(s) | 244, 548, 1676 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 69, 627, 1970 |
| NcoI | CCATGG | 1 cut(s) | 1452 |
| NlaIV | GGNNCC | 5 cut(s) | 127, 336, 1542, 1680, 2090 |
| NmeAIII | GCCGAG | 1 cut(s) | 83 |
| NsiI | ATGCAT | 3 cut(s) | 1071, 1207, 1575 |
| NspI | RCATGY | 3 cut(s) | 1034, 1040, 1073 |
| PaeI | GCATGC | 1 cut(s) | 1073 |
| PagI | TCATGA | 2 cut(s) | 193, 1114 |
| PctI | GAATGC | 1 cut(s) | 1207 |
| PfeI | GAWTC | 7 cut(s) | 212, 301, 574, 1418, 1691, 1738, 1999 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 818, 845, 899 |
| PkrI | GCNGC | 4 cut(s) | 525, 629, 708, 1732 |
| PleI | GAGTC | 2 cut(s) | 1764, 1769 |
| PpsI | GAGTC | 2 cut(s) | 1764, 1769 |
| Ppu21I | YACGTR | 1 cut(s) | 538 |
| PshBI | ATTAAT | 1 cut(s) | 1208 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp6I | CCWGG | 3 cut(s) | 242, 546, 1674 |
| PspFI | CCCAGC | 1 cut(s) | 339 |
| PspGI | CCWGG | 3 cut(s) | 242, 546, 1674 |
| PspN4I | GGNNCC | 5 cut(s) | 127, 336, 1542, 1680, 2090 |
| PstI | CTGCAG | 1 cut(s) | 652 |
| PsuI | RGATCY | 7 cut(s) | 65, 125, 608, 1012, 1487, 1639, 1787 |
| PvuII | CAGCTG | 1 cut(s) | 911 |
| RsaI | GTAC | 2 cut(s) | 949, 1595 |
| RsaNI | GTAC | 2 cut(s) | 948, 1594 |
| RseI | CAYNNNNRTG | 6 cut(s) | 58, 198, 456, 462, 1035, 1074 |
| SaqAI | TTAA | 6 cut(s) | 716, 942, 990, 1208, 1652, 2033 |
| SatI | GCNGC | 4 cut(s) | 524, 628, 707, 1731 |
| SchI | GAGTC | 2 cut(s) | 1765, 1770 |
| ScrFI | CCNGG | 3 cut(s) | 244, 548, 1676 |
| SduI | GDGCHC | 2 cut(s) | 1154, 2117 |
| SfaNI | GCATC | 6 cut(s) | 1056, 1285, 1381, 1560, 1903, 2068 |
| SfcI | CTRYAG | 2 cut(s) | 648, 1086 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 58, 198, 456, 462, 1035, 1074 |
| SphI | GCATGC | 1 cut(s) | 1073 |
| Sse9I | AATT | 9 cut(s) | 404, 493, 503, 529, 601, 712, 1164, 1724, 2049 |
| SsiI | CCGC | 2 cut(s) | 375, 628 |
| SspMI | CTAG | 5 cut(s) | 171, 1275, 1625, 1637, 1872 |
| StyD4I | CCNGG | 3 cut(s) | 242, 546, 1674 |
| StyI | CCWWGG | 2 cut(s) | 557, 1452 |
| TaaI | ACNGT | 6 cut(s) | 263, 275, 744, 771, 1062, 1134 |
| TaiI | ACGT | 4 cut(s) | 540, 792, 873, 1247 |
| TaqI | TCGA | 2 cut(s) | 1095, 1759 |
| TasI | AATT | 9 cut(s) | 404, 493, 503, 529, 601, 712, 1164, 1724, 2049 |
| TauI | GCSGC | 1 cut(s) | 630 |
| TfiI | GAWTC | 7 cut(s) | 212, 301, 574, 1418, 1691, 1738, 1999 |
| Tru1I | TTAA | 6 cut(s) | 716, 942, 990, 1208, 1652, 2033 |
| Tru9I | TTAA | 6 cut(s) | 716, 942, 990, 1208, 1652, 2033 |
| TscAI | CASTG | 2 cut(s) | 268, 296 |
| TseI | GCWGC | 3 cut(s) | 523, 706, 1730 |
| TspRI | CASTG | 2 cut(s) | 268, 296 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 818, 845, 899 |
| VspI | ATTAAT | 1 cut(s) | 1208 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1703 |
| XapI | RAATTY | 4 cut(s) | 404, 529, 712, 1164 |
| XceI | RCATGY | 3 cut(s) | 1034, 1040, 1073 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2102 |
| XspI | CTAG | 5 cut(s) | 171, 1275, 1625, 1637, 1872 |
| ZraI | GACGTC | 1 cut(s) | 1245 |
| Zsp2I | ATGCAT | 3 cut(s) | 1071, 1207, 1575 |