AT4G32860

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016226
Physical Location & Seq
Reverse (-)
15856474 .. 15857440
967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32860.1

Sequence Viewer

Length: 600 bp
ATGCAAATACACGACGACATGGAGGTTTGCTCAACAGTCACAACGAAGAAGCTCTCAAGCCTGGCCAAGCTAATTCTCTTCACCATACAGAAGGTTTCAGACGCCTCACGTCACAAACTCCTCACAACCCTCGATCCACATCTACTCGCGAAACGTGGCAAGATCCTACGCAAATCCTTAAACGAAGCCGTTTCAACCTCCCACTCACGCATCACGTGCCGTCCTTCCGACCACCAAGATGTGCGATCATCCTTCATCTCCCCTGTCCCGCTCCAGCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACGTTCCTACGCCACCACCGTAAGCAAAGGACGACGTAGTAACGGATCTCATAACAGACCGCTCATCAACAAGCGCCAACGCCAAGCGTATATCCGTTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACACGTAGCGGCGGCAGTATTTCCCGACGTAGCTAGCAGCACCGGTACGATGGAAAGCTGCCACGTGGACAGAGCTGCGGAGGAGTTTATACAGAGTTTCTATAGACAGCTGAGGTTGCAGAAGTGGATGATGGCTCAGGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

199

Amino Acids

22.76

Weight (kDa)

9.97

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 173 - 192 2.6e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 271, 376
AccII CGCG 1 cut(s) 149
AciI CCGC 5 cut(s) 269, 374, 461, 464, 530
AclWI GGATC 3 cut(s) 128, 157, 367
AcoI YGGCCR 1 cut(s) 63
AcvI CACGTG 2 cut(s) 216, 517
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 284, 499
AflIII ACRYGT 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 1 cut(s) 195
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 8 cut(s) 52, 70, 277, 294, 485, 510, 527, 562
AluI AGCT 8 cut(s) 52, 70, 277, 294, 485, 510, 527, 562
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 3 cut(s) 128, 157, 367
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 6 cut(s) 294, 297, 300, 489, 510, 527
AsiGI ACCGGT 1 cut(s) 494
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 485
AvaII GGWCC 1 cut(s) 448
BalI TGGCCA 1 cut(s) 65
BbrPI CACGTG 2 cut(s) 216, 517
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 6 cut(s) 281, 309, 312, 497, 501, 514
BccI CCATC 3 cut(s) 449, 496, 577
BceAI ACGGC 2 cut(s) 173, 204
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 278, 486
BfmI CTRYAG 2 cut(s) 295, 553
BfoI RGCGCY 1 cut(s) 391
BisI GCNGC 8 cut(s) 295, 298, 301, 462, 465, 490, 511, 528
BlsI GCNGC 8 cut(s) 296, 299, 302, 463, 466, 491, 512, 529
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 219
BmtI GCTAGC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 2 cut(s) 563, 588
BpuEI CTTGAG 1 cut(s) 40
BsaAI YACGTR 3 cut(s) 216, 457, 517
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 426
BsaWI WCCGGW 1 cut(s) 494
Bse118I RCCGGY 1 cut(s) 494
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 248, 585
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 554
BseRI GAGGAG 2 cut(s) 110, 548
BseXI GCAGC 6 cut(s) 281, 309, 312, 497, 501, 514
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 494
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 2 cut(s) 251, 461
BsmAI GTCTC 1 cut(s) 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 251, 461
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 133, 162, 245, 359
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 5 cut(s) 269, 374, 461, 464, 530
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 449
BspMAI CTGCAG 1 cut(s) 299
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 3 cut(s) 128, 157, 367
BsrBI CCGCTC 2 cut(s) 271, 376
BsrFI RCCGGY 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 4 cut(s) 133, 162, 245, 359
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 37, 334
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 216
BstBAI YACGTR 3 cut(s) 216, 457, 517
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 563, 588
BstF5I GGATG 2 cut(s) 248, 585
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 136, 165, 248, 362
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 4 cut(s) 133, 162, 245, 359
BstMWI GCNNNNNNNGC 3 cut(s) 216, 300, 568
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 2 cut(s) 295, 553
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 6 cut(s) 281, 309, 312, 497, 501, 514
BstX2I RGATCY 2 cut(s) 162, 359
BstYI RGATCY 2 cut(s) 162, 359
BsuRI GGCC 1 cut(s) 65
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 248, 585
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 487
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 283, 498
CspAI ACCGGT 1 cut(s) 494
CviAII CATG 1 cut(s) 19
CviQI GTAC 2 cut(s) 283, 498
DdeI CTNAG 2 cut(s) 563, 588
DpnI GATC 4 cut(s) 135, 164, 247, 361
DpnII GATC 4 cut(s) 133, 162, 245, 359
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 448
Eco72I CACGTG 2 cut(s) 216, 517
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 1 cut(s) 22
FaiI YATR 6 cut(s) 20, 86, 366, 405, 542, 555
FaqI GGGAC 2 cut(s) 251, 461
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 8 cut(s) 295, 298, 301, 462, 465, 490, 511, 528
FokI GGATG 2 cut(s) 235, 592
Fsp4HI GCNGC 8 cut(s) 295, 298, 301, 462, 465, 490, 511, 528
FspBI CTAG 2 cut(s) 278, 486
GlaI GCGC 1 cut(s) 389
GluI GCNGC 8 cut(s) 295, 298, 301, 462, 465, 490, 511, 528
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 495
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 100, 229
Hpy188III TCNNGA 4 cut(s) 148, 434, 476, 590
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 3 cut(s) 17, 351, 482
HpyAV CCTTC 3 cut(s) 85, 234, 262
HpyCH4III ACNGT 2 cut(s) 37, 334
HpyCH4IV ACGT 8 cut(s) 109, 154, 215, 316, 349, 456, 480, 516
HpyCH4V TGCA 3 cut(s) 4, 297, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 300, 568
HpyF3I CTNAG 2 cut(s) 563, 588
HpySE526I ACGT 8 cut(s) 109, 154, 215, 316, 349, 456, 480, 516
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 4 cut(s) 133, 162, 245, 359
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 7 cut(s) 47, 74, 276, 287, 430, 508, 575
Lsp1109I GCAGC 6 cut(s) 281, 309, 312, 497, 501, 514
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 278, 486
MaeII ACGT 8 cut(s) 109, 154, 215, 316, 349, 456, 480, 516
MaeIII GTNAC 5 cut(s) 37, 110, 353, 410, 434
MalI GATC 4 cut(s) 135, 164, 247, 361
MbiI CCGCTC 2 cut(s) 271, 376
MboI GATC 4 cut(s) 133, 162, 245, 359
MboII GAAGA 2 cut(s) 58, 70
MflI RGATCY 2 cut(s) 162, 359
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 8 cut(s) 16, 115, 131, 140, 208, 526, 558, 586
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 179, 598
MslI CAYNNNNRTG 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 2 cut(s) 294, 562
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 216, 300, 568
NdeII GATC 4 cut(s) 133, 162, 245, 359
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 3 cut(s) 37, 110, 434
NruI TCGCGA 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 8 cut(s) 296, 299, 302, 463, 466, 491, 512, 529
PleI GAGTC 1 cut(s) 431
PmaCI CACGTG 2 cut(s) 216, 517
PmlI CACGTG 2 cut(s) 216, 517
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 3 cut(s) 216, 457, 517
Psp6I CCWGG 1 cut(s) 60
PspCI CACGTG 2 cut(s) 216, 517
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 2 cut(s) 162, 359
PvuII CAGCTG 2 cut(s) 294, 562
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 2 cut(s) 284, 499
RsaNI GTAC 2 cut(s) 283, 498
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 179, 598
SatI GCNGC 8 cut(s) 295, 298, 301, 462, 465, 490, 511, 528
Sau3AI GATC 4 cut(s) 133, 162, 245, 359
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 62
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 2 cut(s) 295, 553
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 1 cut(s) 72
SsiI CCGC 5 cut(s) 269, 374, 461, 464, 530
SspMI CTAG 2 cut(s) 278, 486
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 37, 334
TaiI ACGT 8 cut(s) 112, 157, 218, 319, 352, 459, 483, 519
TaqI TCGA 1 cut(s) 132
TaqII GACCGA 1 cut(s) 465
TasI AATT 1 cut(s) 72
TauI GCSGC 2 cut(s) 464, 467
Tru1I TTAA 2 cut(s) 179, 598
Tru9I TTAA 2 cut(s) 179, 598
TseFI GTSAC 3 cut(s) 37, 110, 434
TseI GCWGC 6 cut(s) 294, 297, 300, 489, 510, 527
Tsp45I GTSAC 3 cut(s) 37, 110, 434
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 2 cut(s) 372, 398
VpaK11BI GGWCC 1 cut(s) 448
XspI CTAG 2 cut(s) 278, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.