MD08G1111800.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016226
Physical Location & Seq
Reverse (-)
9871474 .. 9872070
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1111800.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGAACCTACAAATACACCGGTGATAGCCAAGAAACTAAGAAACATGGTACGTCTAGTTTTGTTCACGTTACAAAAGGGGGTCTCCAAGAAAAAGCTGACGATGATGAAACATGGGAAGATCTTAGGCAAGTCTTTCAATGATTTCATGGTCCGTCATCAGACTGAGCTCAGCTGCAAGTCGGACGACGTACAAGTAACATCGTTCGTATACCCATTAGAGTACGAGTTCAGCTGCACCAGCAGCCCGCCGCGCAGGTCATCCTACACTCCTCCATGTCAATCCGGCAAGGTGTACAAGGGGCGGTATGTTAGGCAGCATTCGCGGAGGGGAGTTTATGTGCCAATGATGTGTGAGGATGCATTGGCGACAGTCCATGGGGGGAAGAAAGCGAGTTATCGCGGCAGTGATGTGGTGGAGCCGCTGCCAATTGTGAGGCGGGCGCTGGTGAGGGTAACGGAGTGGGAGCCTTTGTTACCGTTGAGTAGTGATGAGGAGGAGGATTACCATGTGGACAAGGCAGCCCAGGAATTTATAGACAAGTTTTATAGGGAGTTAATGTTGCAAAAGTGGATGGCTGCAGGTCGATACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

199

Amino Acids

22.82

Weight (kDa)

9.46

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 246, 572
AccI GTMKAC 1 cut(s) 210
AccII CGCG 3 cut(s) 253, 325, 402
AciI CCGC 7 cut(s) 248, 251, 304, 325, 402, 422, 439
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 4 cut(s) 51, 192, 224, 296
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 97, 169, 174, 234, 594
AluI AGCT 5 cut(s) 97, 169, 174, 234, 594
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 88
ApeKI GCWGC 7 cut(s) 174, 234, 243, 316, 424, 521, 578
ApoI RAATTY 1 cut(s) 530
AsiGI ACCGGT 1 cut(s) 19
AspLEI GCGC 2 cut(s) 255, 445
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 34, 460
AvaII GGWCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BccI CCATC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 2 cut(s) 246, 572
BglII AGATCT 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 6, 420, 468
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 376, 525
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 6 cut(s) 324, 354, 458, 488, 545, 575
Bse118I RCCGGY 1 cut(s) 19
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 376, 525
BseGI GGATG 3 cut(s) 260, 364, 579
BseMII CTCAG 2 cut(s) 156, 184
BseRI GAGGAG 3 cut(s) 261, 509, 512
BseXI GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 3 cut(s) 253, 325, 402
BshTI ACCGGT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 20, 285
BsmAI GTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 1 cut(s) 120
Bsp1720I GCTNAGC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 7 cut(s) 248, 251, 304, 325, 402, 422, 439
BspCNI CTCAG 2 cut(s) 157, 183
BspFNI CGCG 3 cut(s) 253, 325, 402
BspLI GGNNCC 3 cut(s) 6, 420, 468
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 2 cut(s) 246, 572
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 376, 525
BssMI GATC 1 cut(s) 120
BssNAI GTATAC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 376
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 373, 480
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 248, 441
BstDEI CTNAG 4 cut(s) 38, 124, 165, 170
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 3 cut(s) 260, 364, 579
BstFNI CGCG 3 cut(s) 253, 325, 402
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 255, 445
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 240, 243, 252, 322
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 3 cut(s) 253, 325, 402
BstV1I GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 3 cut(s) 260, 364, 579
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
BveI ACCTGC 2 cut(s) 246, 572
Cac8I GCNNGC 2 cut(s) 248, 441
CfoI GCGC 2 cut(s) 255, 445
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 4 cut(s) 50, 191, 223, 295
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 6 cut(s) 46, 113, 148, 276, 377, 509
CviQI GTAC 4 cut(s) 50, 191, 223, 295
DdeI CTNAG 4 cut(s) 38, 124, 165, 170
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 6 cut(s) 49, 116, 151, 279, 380, 512
FatI CATG 6 cut(s) 45, 112, 147, 275, 376, 508
FauI CCCGC 2 cut(s) 255, 432
FblI GTMKAC 1 cut(s) 210
FokI GGATG 3 cut(s) 247, 371, 586
FriOI GRGCYC 1 cut(s) 171
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 254, 444
HaeII RGCGCY 1 cut(s) 446
HapII CCGG 2 cut(s) 20, 285
HhaI GCGC 2 cut(s) 255, 445
Hin1II CATG 6 cut(s) 49, 116, 151, 279, 380, 512
Hin6I GCGC 2 cut(s) 253, 443
HinP1I GCGC 2 cut(s) 253, 443
HpaII CCGG 2 cut(s) 20, 285
HphI GGTGA 2 cut(s) 34, 460
Hpy166II GTNNAC 4 cut(s) 66, 211, 295, 514
Hpy188I TCNGA 2 cut(s) 162, 184
Hpy8I GTNNAC 4 cut(s) 66, 211, 295, 514
Hpy99I CGWCG 1 cut(s) 191
HpyCH4III ACNGT 2 cut(s) 373, 480
HpyCH4IV ACGT 3 cut(s) 52, 68, 189
HpyCH4V TGCA 5 cut(s) 177, 237, 362, 565, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 243, 252, 322
HpyF3I CTNAG 4 cut(s) 38, 124, 165, 170
HpySE526I ACGT 3 cut(s) 52, 68, 189
Hsp92II CATG 6 cut(s) 49, 116, 151, 279, 380, 512
HspAI GCGC 2 cut(s) 253, 443
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 418, 466
LpnPI CCDG 8 cut(s) 33, 241, 253, 298, 431, 512, 539, 567
Lsp1109I GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 52, 68, 189
MaeIII GTNAC 4 cut(s) 69, 196, 454, 474
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 130, 397
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 429, 530
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 282, 321, 349, 429, 444, 487, 490, 493
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 557
MspA1I CMGCKG 4 cut(s) 174, 234, 424, 594
MspI CCGG 2 cut(s) 20, 285
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 3 cut(s) 253, 325, 402
MwoI GCNNNNNNNGC 4 cut(s) 240, 243, 252, 322
NcoI CCATGG 1 cut(s) 376
NdeII GATC 1 cut(s) 120
NlaIII CATG 6 cut(s) 49, 116, 151, 279, 380, 512
NlaIV GGNNCC 3 cut(s) 6, 420, 468
NsiI ATGCAT 1 cut(s) 364
PctI GAATGC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 6, 420, 468
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 120
PvuII CAGCTG 3 cut(s) 174, 234, 594
RsaI GTAC 4 cut(s) 51, 192, 224, 296
RsaNI GTAC 4 cut(s) 50, 191, 223, 295
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 557
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 19
SinI GGWCC 1 cut(s) 151
Sse9I AATT 2 cut(s) 429, 530
SsiI CCGC 7 cut(s) 248, 251, 304, 325, 402, 422, 439
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 373, 480
TaiI ACGT 3 cut(s) 55, 71, 192
TaqI TCGA 1 cut(s) 586
TasI AATT 2 cut(s) 429, 530
TatI WGTACW 1 cut(s) 294
TauI GCSGC 3 cut(s) 253, 405, 424
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 1 cut(s) 412
TseI GCWGC 7 cut(s) 174, 234, 243, 316, 424, 521, 578
TspDTI ATGAA 2 cut(s) 122, 136
TspGWI ACGGA 2 cut(s) 143, 473
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.