FvH4_2g35430

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016226
Physical Location & Seq
Forward (+)
26121674 .. 26122841
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35430.t1

Sequence Viewer

Length: 591 bp
ATGGAACATACTACCACACCAGAGATAGCCATAAAGAAACTAAGCAACATGTTACGTCTGATGATGAAACGTGGTAAGATCCTAGGCAAGTCGGTAAACGACTTCATGCTCCGCCACCACACCACCCTCGACTCAGTCCGGTGCCGTTCGCTCGACGACGTGAACGTCTCGTTCGTTTACCCCCTCGAGTACGAGTTCAGCTGCAGCAGCAGCCCCCCGCACCACCAACGGCCCCGCACACCCGGCCACCTTAAGCGCAGCAACACCAACTACTACAACGGCCGTTACCATCATCATCAGCACTCGCGGCGGTCCGTTTACGTGCCGATGATGTGCGAGGACGTGTTGGGGAGTAAGAACGTGTCCTTCTGTGGCGGTGATGTGGTGGAGCCGCTGCGGCGGAGGCCGAGGGTGAGGAGGGTTAGGATAACGGAGTGGGAGCCGTTATTTCCGTTGAACACCAGTGAAGAAGAGGAGGAGGAGGAGGAGGAGTGGCATGTCGACAAGGCGGCGCAGGAATTCATCGACAAGTTTTATCGGGATCTAATGTTGCAGAAGTGGAATACGGTAGCAGCAGATCGATGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

197

Amino Acids

23.3

Weight (kDa)

8.27

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 307
AclWI GGATC 2 cut(s) 73, 549
AcoI YGGCCR 2 cut(s) 244, 280
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 1 cut(s) 191
AflII CTTAAG 1 cut(s) 251
AflIII ACRYGT 3 cut(s) 48, 342, 360
AgsI TTSAA 1 cut(s) 457
AjiI CACGTC 2 cut(s) 160, 343
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 2 cut(s) 73, 549
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 4 cut(s) 230, 244, 280, 404
ApeKI GCWGC 7 cut(s) 201, 204, 207, 210, 258, 394, 572
ApoI RAATTY 1 cut(s) 518
AspA2I CCTAGG 1 cut(s) 82
AspLEI GCGC 2 cut(s) 258, 514
AspS9I GGNCC 2 cut(s) 231, 312
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 389, 424
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 312
AvrII CCTAGG 1 cut(s) 82
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 7 cut(s) 188, 216, 219, 222, 270, 381, 584
BccI CCATC 1 cut(s) 297
BceAI ACGGC 5 cut(s) 129, 245, 267, 295, 427
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 83, 589
BfmI CTRYAG 1 cut(s) 202
BfrI CTTAAG 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 397
BlnI CCTAGG 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 2 cut(s) 160, 343
BmgT120I GGNCC 2 cut(s) 231, 312
BmiI GGNNCC 4 cut(s) 143, 233, 390, 441
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 82, 407
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bse1I ACTGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 82, 407
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 7 cut(s) 430, 488, 491, 494, 497, 500, 503
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 7 cut(s) 188, 216, 219, 222, 270, 381, 584
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 4 cut(s) 232, 246, 282, 406
BshNI GGYRCC 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 139, 243
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 4 cut(s) 232, 246, 282, 406
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 3 cut(s) 78, 541, 577
BspANI GGCC 4 cut(s) 232, 246, 282, 406
BspCNI CTCAG 1 cut(s) 146
BspDI ATCGAT 1 cut(s) 580
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 143, 233, 390, 441
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 2 cut(s) 73, 549
BspT107I GGYRCC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 251
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 82, 407
BssMI GATC 3 cut(s) 78, 541, 577
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 1 cut(s) 465
BstAFI CTTAAG 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 41, 133
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 2 cut(s) 258, 514
BstKTI GATC 3 cut(s) 81, 544, 580
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 78, 541, 577
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 6 cut(s) 207, 210, 243, 307, 397, 403
BstNSI RCATGY 2 cut(s) 52, 500
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 7 cut(s) 188, 216, 219, 222, 270, 381, 584
BstX2I RGATCY 2 cut(s) 78, 541
BstYI RGATCY 2 cut(s) 78, 541
BstZI CGGCCG 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 580
BsuRI GGCC 4 cut(s) 232, 246, 282, 406
BsuTUI ATCGAT 1 cut(s) 580
BtrI CACGTC 2 cut(s) 160, 343
BtsIMutI CAGTG 1 cut(s) 469
CfoI GCGC 2 cut(s) 258, 514
Cfr13I GGNCC 2 cut(s) 231, 312
ClaI ATCGAT 1 cut(s) 580
CpoI CGGWCCG 1 cut(s) 312
Csp6I GTAC 1 cut(s) 190
CspI CGGWCCG 1 cut(s) 312
CviAII CATG 3 cut(s) 49, 106, 497
CviJI RGCY 9 cut(s) 29, 201, 213, 232, 246, 282, 391, 406, 442
CviKI_1 RGCY 9 cut(s) 29, 201, 213, 232, 246, 282, 391, 406, 442
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 41, 133
DpnI GATC 3 cut(s) 80, 543, 579
DpnII GATC 3 cut(s) 78, 541, 577
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 2 cut(s) 244, 280
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 2 cut(s) 101, 415
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 312
Eco52I CGGCCG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 3 cut(s) 52, 109, 500
FaiI YATR 5 cut(s) 9, 32, 50, 107, 498
FatI CATG 3 cut(s) 48, 105, 496
FauI CCCGC 2 cut(s) 225, 242
FblI GTMKAC 1 cut(s) 501
FspBI CTAG 2 cut(s) 83, 589
GlaI GCGC 2 cut(s) 257, 513
HaeIII GGCC 4 cut(s) 232, 246, 282, 406
HapII CCGG 2 cut(s) 139, 243
HhaI GCGC 2 cut(s) 258, 514
Hin1II CATG 3 cut(s) 52, 109, 500
Hin6I GCGC 2 cut(s) 256, 512
HinP1I GCGC 2 cut(s) 256, 512
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 131
HpaII CCGG 2 cut(s) 139, 243
HphI GGTGA 2 cut(s) 389, 424
Hpy166II GTNNAC 5 cut(s) 97, 163, 178, 319, 502
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 5 cut(s) 97, 163, 178, 319, 502
Hpy99I CGWCG 2 cut(s) 158, 161
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 7 cut(s) 55, 70, 159, 165, 321, 342, 360
HpyCH4V TGCA 2 cut(s) 204, 553
HpyF10VI GCNNNNNNNGC 6 cut(s) 207, 210, 243, 307, 397, 403
HpyF3I CTNAG 2 cut(s) 41, 133
HpySE526I ACGT 7 cut(s) 55, 70, 159, 165, 321, 342, 360
Hsp92II CATG 3 cut(s) 52, 109, 500
HspAI GCGC 2 cut(s) 256, 512
Kzo9I GATC 3 cut(s) 78, 541, 577
LmnI GCTCC 3 cut(s) 114, 388, 439
LpnPI CCDG 5 cut(s) 33, 152, 256, 475, 500
Lsp1109I GCAGC 7 cut(s) 188, 216, 219, 222, 270, 381, 584
LweI GCATC 1 cut(s) 572
MaeI CTAG 2 cut(s) 83, 589
MaeII ACGT 7 cut(s) 55, 70, 159, 165, 321, 342, 360
MaeIII GTNAC 2 cut(s) 51, 284
MalI GATC 3 cut(s) 80, 543, 579
MboI GATC 3 cut(s) 78, 541, 577
MboII GAAGA 2 cut(s) 479, 482
MflI RGATCY 2 cut(s) 78, 541
MluCI AATT 1 cut(s) 518
MlyI GAGTC 1 cut(s) 125
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 201, 394
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 2 cut(s) 139, 243
MspR9I CCNGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 6 cut(s) 207, 210, 243, 307, 397, 403
NciI CCSGG 1 cut(s) 243
NdeII GATC 3 cut(s) 78, 541, 577
NlaIII CATG 3 cut(s) 52, 109, 500
NlaIV GGNNCC 4 cut(s) 143, 233, 390, 441
NmeAIII GCCGAG 1 cut(s) 432
NspI RCATGY 2 cut(s) 52, 500
PaeR7I CTCGAG 1 cut(s) 185
PciI ACATGT 1 cut(s) 48
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 171
PflFI GACNNNGTC 1 cut(s) 134
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 322
PscI ACATGT 1 cut(s) 48
PspN4I GGNNCC 4 cut(s) 143, 233, 390, 441
PspPI GGNCC 2 cut(s) 231, 312
PspXI VCTCGAGB 1 cut(s) 185
PstI CTGCAG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 78, 541
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Rsr2I CGGWCCG 1 cut(s) 312
RsrII CGGWCCG 1 cut(s) 312
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 3 cut(s) 78, 541, 577
Sau96I GGNCC 2 cut(s) 231, 312
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 243
SetI ASST 9 cut(s) 58, 73, 162, 168, 203, 252, 324, 345, 363
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 185, 251
SmoI CTYRAG 2 cut(s) 185, 251
Sse9I AATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 83, 589
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 7 cut(s) 58, 73, 162, 168, 324, 345, 363
TaqI TCGA 6 cut(s) 129, 153, 186, 501, 525, 580
TasI AATT 1 cut(s) 518
TauI GCSGC 4 cut(s) 310, 394, 400, 512
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 469
TseI GCWGC 7 cut(s) 201, 204, 207, 210, 258, 394, 572
TspDTI ATGAA 3 cut(s) 80, 94, 511
TspGWI ACGGA 3 cut(s) 304, 441, 446
TspRI CASTG 1 cut(s) 469
Tth111I GACNNNGTC 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 52, 500
XhoI CTCGAG 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 2 cut(s) 83, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.