Rorug06G0349700

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016226
Physical Location & Seq
Reverse (-)
49935760 .. 49936575
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0349700.1

Sequence Viewer

Length: 612 bp
ATGGATGATCATATTGCCATAGCGGAGAAATTGATAAAGAAAGCAAACAAGAAGTTGGATGGTTGGGGACTTATCGGTTCCAAACACAAAGATGTTGCCAAACTCTTGGATCAAGCTGCCAACTCTTACAAACTCGCCAAATCCTGGTATAAAGCTAGAGAAACATATATCAATTTGGCAATACATCATTTCAAGACCAAAACCAAACTTGAAGCCGCTGCCACAGCTTTTGTTGATGCTGCACATTGCTACGATATAACATCTGTTGATGAGGCCATTGATTGTCTAGAGCAAGGAGTCGATTACCTCTCCGAGCTATTCCAAAACAAAGAACTAACAATCTCTGCCAACCAGTGTTATCAAAAAGCTGCTCAGCTTGCTGCACAGATTGAGCAATATTCCATGGCCATCGAAATTTTCGAAAAAATTGCTACTCGTTCGCTCAGCCACAGCTTGCTCATGGACGAAGCTCAGAGGCATCTCTTCAACGCTGGAATATGCCGGCTCTGCCAAGGAGATGATGTTGTTGCAATGGACATGTCAGTTATGCGATACGTGGACATGTACCCAAATTTTCCTGATACATGGGAGACTGGGAGTGCAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

203

Amino Acids

22.84

Weight (kDa)

5.62

Isoelectric Point (pI)

21.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAP PF14938 8 - 104 3.2e-19 Soluble NSF attachment protein, SNAP
SNAP PF14938 105 - 198 5.7e-23 Soluble NSF attachment protein, SNAP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 2 cut(s) 23, 216
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 3 cut(s) 414, 571, 604
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 144
AflIII ACRYGT 2 cut(s) 537, 561
AgsI TTSAA 3 cut(s) 193, 212, 487
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 8 cut(s) 116, 155, 227, 316, 368, 376, 453, 470
AluI AGCT 8 cut(s) 116, 155, 227, 316, 368, 376, 453, 470
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 117
AoxI GGCC 2 cut(s) 273, 405
ApeKI GCWGC 5 cut(s) 116, 218, 239, 368, 380
ApoI RAATTY 3 cut(s) 414, 571, 604
AsuII TTCGAA 1 cut(s) 420
BalI TGGCCA 1 cut(s) 407
BbvI GCAGC 5 cut(s) 103, 205, 226, 355, 367
BccI CCATC 2 cut(s) 53, 416
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 2 cut(s) 156, 287
BisI GCNGC 6 cut(s) 117, 216, 219, 240, 369, 381
BlpI GCTNAGC 2 cut(s) 372, 443
BlsI GCNGC 6 cut(s) 118, 217, 220, 241, 370, 382
Bme1390I CCNGG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 226, 487
BmuI ACTGGG 1 cut(s) 603
Bpu1102I GCTNAGC 2 cut(s) 372, 443
Bpu14I TTCGAA 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 402, 511
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 2 cut(s) 352, 598
Bse3DI GCAATG 2 cut(s) 244, 537
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 402, 511
BseGI GGATG 2 cut(s) 10, 64
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 2 cut(s) 244, 537
BseMII CTCAG 3 cut(s) 386, 457, 485
BseNI ACTGG 2 cut(s) 352, 598
BseXI GCAGC 5 cut(s) 103, 205, 226, 355, 367
BsgI GTGCAG 2 cut(s) 225, 366
BshFI GGCC 2 cut(s) 275, 407
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 2 cut(s) 275, 407
Bsp119I TTCGAA 1 cut(s) 420
Bsp143I GATC 2 cut(s) 7, 109
Bsp1720I GCTNAGC 2 cut(s) 372, 443
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 2 cut(s) 23, 216
BspANI GGCC 2 cut(s) 275, 407
BspCNI CTCAG 3 cut(s) 385, 456, 484
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 420
BsrDI GCAATG 2 cut(s) 244, 537
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 2 cut(s) 352, 598
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 402, 511
BssMI GATC 2 cut(s) 7, 109
BssT1I CCWWGG 2 cut(s) 402, 511
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 378, 455, 503
BstDEI CTNAG 3 cut(s) 372, 443, 471
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 10, 64
BstKTI GATC 2 cut(s) 10, 112
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 2 cut(s) 7, 109
BstMWI GCNNNNNNNGC 3 cut(s) 224, 377, 507
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 2 cut(s) 541, 565
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 5 cut(s) 103, 205, 226, 355, 367
BstXI CCANNNNNNTGG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 275, 407
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 10, 64
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 3 cut(s) 378, 455, 503
Cfr10I RCCGGY 1 cut(s) 501
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 5 cut(s) 403, 460, 538, 562, 585
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 372, 443, 471
DpnI GATC 2 cut(s) 9, 111
DpnII GATC 2 cut(s) 7, 109
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 402, 511
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 402, 511
ErhI CCWWGG 2 cut(s) 402, 511
FaeI CATG 5 cut(s) 406, 463, 541, 565, 588
FaqI GGGAC 1 cut(s) 81
FatI CATG 5 cut(s) 402, 459, 537, 561, 584
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 6 cut(s) 117, 216, 219, 240, 369, 381
FokI GGATG 2 cut(s) 17, 71
Fsp4HI GCNGC 6 cut(s) 117, 216, 219, 240, 369, 381
FspBI CTAG 2 cut(s) 156, 287
GluI GCNGC 6 cut(s) 117, 216, 219, 240, 369, 381
HaeIII GGCC 2 cut(s) 275, 407
HapII CCGG 1 cut(s) 502
Hin1II CATG 5 cut(s) 406, 463, 541, 565, 588
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 313, 474
Hpy188III TCNNGA 4 cut(s) 193, 287, 578, 609
Hpy8I GTNNAC 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 242, 383, 530, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 377, 507
HpyF3I CTNAG 3 cut(s) 372, 443, 471
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 5 cut(s) 406, 463, 541, 565, 588
KroI GCCGGC 1 cut(s) 501
KroNI GCCGGC 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 109
LpnPI CCDG 7 cut(s) 130, 157, 365, 477, 515, 579, 591
Lsp1109I GCAGC 5 cut(s) 103, 205, 226, 355, 367
LweI GCATC 2 cut(s) 226, 487
MaeI CTAG 2 cut(s) 156, 287
MaeII ACGT 1 cut(s) 555
MalI GATC 2 cut(s) 9, 111
MboI GATC 2 cut(s) 7, 109
MboII GAAGA 1 cut(s) 475
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 6 cut(s) 29, 172, 414, 426, 571, 604
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 3 cut(s) 265, 317, 468
Mox20I TGGCCA 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 224, 377, 507
NaeI GCCGGC 1 cut(s) 503
NcoI CCATGG 1 cut(s) 402
NdeII GATC 2 cut(s) 7, 109
NgoMIV GCCGGC 1 cut(s) 501
NlaIII CATG 5 cut(s) 406, 463, 541, 565, 588
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 2 cut(s) 541, 565
NspV TTCGAA 1 cut(s) 420
PciI ACATGT 2 cut(s) 537, 561
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdiI GCCGGC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 6 cut(s) 118, 217, 220, 241, 370, 382
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 556
PscI ACATGT 2 cut(s) 537, 561
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 6 cut(s) 117, 216, 219, 240, 369, 381
Sau3AI GATC 2 cut(s) 7, 109
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 145
SfaNI GCATC 2 cut(s) 226, 487
SfuI TTCGAA 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 6 cut(s) 29, 172, 414, 426, 571, 604
SsiI CCGC 2 cut(s) 23, 216
SspI AATATT 1 cut(s) 398
SspMI CTAG 2 cut(s) 156, 287
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 402, 511
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 300, 411, 420
TasI AATT 6 cut(s) 29, 172, 414, 426, 571, 604
TauI GCSGC 1 cut(s) 218
TscAI CASTG 1 cut(s) 359
TseI GCWGC 5 cut(s) 116, 218, 239, 368, 380
TspRI CASTG 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 3 cut(s) 414, 571, 604
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 2 cut(s) 541, 565
XspI CTAG 2 cut(s) 156, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.