Prupe.1G446200_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016226
Physical Location & Seq
Reverse (-)
37748215 .. 37748820
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G446200.1

Sequence Viewer

Length: 606 bp
ATGGAGCCTCCTGCTACACCAATCATAGCCAAGAAACTGAGCAACATGGTACGTCTGATTTTGTTCGCATTACAAAAGGGCGTGTCCAAAAAGAAGCTGATGATGATGAAGGAGCATGGGAAGATCTTAGGCAAGTCCTTCAATGATTTCATGGTTCGCCACCACACGGCGCTCAGCTGCAAGTCACATGACGTGCACGTGTCCTTCGTGTACCCCCTCGAGTACGAGTTCAGCTGCAAAAGCAGCATCCCACCGTACAGATCGTCCTACACTCCTCCCTGCCACGACAGCGGGCACAATAAGGGCCGTTACGTTAGGCAGCGTTCGCGGAGGAGCGTTTACGTGCCGATGATGTGTGAGAATGTATTGGCGACGGTTAACACCGGTAGGAAAGTGAGCTTTCGCGGCGGTGATGTGGTGGAACCACTGCCGATGGTGAGGCGGGTGAGGATAACGGAGTGGGAGCCGTTGTTCCCGTTGAATATTGATGAGGAGGAGGAGGAGGAGGAGGATTATCATGTGGACAAAGCAGCACAGGAATTTATTGACAAGTTTTATAGGGAGTTAATGTTACAAAAATGGATGGCCGTAGATTCCTCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

202

Amino Acids

23.42

Weight (kDa)

8.81

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 328, 405
AciI CCGC 5 cut(s) 291, 328, 405, 408, 442
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 539
AcvI CACGTG 1 cut(s) 199
AfaI GTAC 4 cut(s) 51, 212, 224, 257
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 198
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 2 cut(s) 142, 481
AjiI CACGTC 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 97, 177, 234, 399
AluI AGCT 4 cut(s) 97, 177, 234, 399
Alw21I GWGCWC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 304, 585
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 5 cut(s) 177, 234, 243, 319, 530
ApoI RAATTY 1 cut(s) 539
AsiGI ACCGGT 1 cut(s) 383
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 422, 448, 457
AvaI CYCGRG 1 cut(s) 218
BaeGI GKGCMC 2 cut(s) 198, 297
BbrPI CACGTG 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 5 cut(s) 164, 221, 255, 331, 542
BccI CCATC 2 cut(s) 427, 577
BceAI ACGGC 4 cut(s) 183, 291, 451, 572
BfoI RGCGCY 1 cut(s) 173
BglII AGATCT 1 cut(s) 123
BisI GCNGC 6 cut(s) 178, 235, 244, 320, 406, 531
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 6 cut(s) 179, 236, 245, 321, 407, 532
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 3 cut(s) 6, 423, 465
BmsI GCATC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 173
BsaAI YACGTR 2 cut(s) 199, 343
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 554, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 383
BseGI GGATG 2 cut(s) 246, 588
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 29, 187
BseRI GAGGAG 8 cut(s) 264, 346, 506, 509, 512, 515, 518, 521
BseSI GKGCMC 2 cut(s) 198, 297
BseXI GCAGC 5 cut(s) 164, 221, 255, 331, 542
Bsh1236I CGCG 2 cut(s) 328, 405
BshFI GGCC 2 cut(s) 306, 587
BshTI ACCGGT 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 2 cut(s) 306, 587
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 198, 297
Bsp143I GATC 2 cut(s) 123, 260
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 5 cut(s) 291, 328, 405, 408, 442
BspANI GGCC 2 cut(s) 306, 587
BspCNI CTCAG 2 cut(s) 30, 186
BspFNI CGCG 2 cut(s) 328, 405
BspLI GGNNCC 3 cut(s) 6, 423, 465
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssMI GATC 2 cut(s) 123, 260
Bst4CI ACNGT 2 cut(s) 255, 376
BstBAI YACGTR 2 cut(s) 199, 343
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 3 cut(s) 38, 127, 173
BstF5I GGATG 2 cut(s) 246, 588
BstFNI CGCG 2 cut(s) 328, 405
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 126, 263
BstMBI GATC 2 cut(s) 123, 260
BstMWI GCNNNNNNNGC 5 cut(s) 240, 243, 288, 325, 405
BstSLI GKGCMC 2 cut(s) 198, 297
BstUI CGCG 2 cut(s) 328, 405
BstV1I GCAGC 5 cut(s) 164, 221, 255, 331, 542
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 306, 587
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 246, 588
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 425, 601
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 4 cut(s) 50, 211, 223, 256
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 5 cut(s) 46, 116, 151, 188, 518
CviJI RGCY 9 cut(s) 7, 29, 97, 177, 234, 306, 399, 466, 587
CviKI_1 RGCY 9 cut(s) 7, 29, 97, 177, 234, 306, 399, 466, 587
CviQI GTAC 4 cut(s) 50, 211, 223, 256
DdeI CTNAG 3 cut(s) 38, 127, 173
DpnI GATC 2 cut(s) 125, 262
DpnII GATC 2 cut(s) 123, 260
EaeI YGGCCR 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 218
FaeI CATG 5 cut(s) 49, 119, 154, 191, 521
FaiI YATR 7 cut(s) 26, 47, 117, 152, 189, 519, 558
FatI CATG 5 cut(s) 45, 115, 150, 187, 517
FauI CCCGC 2 cut(s) 284, 435
Fnu4HI GCNGC 6 cut(s) 178, 235, 244, 320, 406, 531
FokI GGATG 2 cut(s) 233, 595
Fsp4HI GCNGC 6 cut(s) 178, 235, 244, 320, 406, 531
GlaI GCGC 1 cut(s) 171
GluI GCNGC 6 cut(s) 178, 235, 244, 320, 406, 531
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 306, 587
HapII CCGG 1 cut(s) 384
HhaI GCGC 1 cut(s) 172
Hin1II CATG 5 cut(s) 49, 119, 154, 191, 521
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 1 cut(s) 593
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 1 cut(s) 384
HphI GGTGA 3 cut(s) 422, 448, 457
Hpy166II GTNNAC 5 cut(s) 196, 211, 340, 379, 523
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 5 cut(s) 196, 211, 340, 379, 523
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 103, 148, 214
HpyCH4III ACNGT 2 cut(s) 255, 376
HpyCH4IV ACGT 5 cut(s) 52, 192, 198, 312, 342
HpyCH4V TGCA 3 cut(s) 180, 196, 237
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 243, 288, 325, 405
HpyF3I CTNAG 3 cut(s) 38, 127, 173
HpySE526I ACGT 5 cut(s) 52, 192, 198, 312, 342
Hsp92II CATG 5 cut(s) 49, 119, 154, 191, 521
HspAI GCGC 1 cut(s) 170
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 2 cut(s) 123, 260
LmnI GCTCC 4 cut(s) 4, 112, 333, 463
LpnPI CCDG 4 cut(s) 24, 292, 397, 521
Lsp1109I GCAGC 5 cut(s) 164, 221, 255, 331, 542
LweI GCATC 1 cut(s) 255
MaeII ACGT 5 cut(s) 52, 192, 198, 312, 342
MaeIII GTNAC 3 cut(s) 183, 308, 570
MalI GATC 2 cut(s) 125, 262
MboI GATC 2 cut(s) 123, 260
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 198, 297
MluCI AATT 1 cut(s) 539
MseI TTAA 2 cut(s) 378, 566
MspA1I CMGCKG 3 cut(s) 177, 234, 291
MspI CCGG 1 cut(s) 384
MvnI CGCG 2 cut(s) 328, 405
MwoI GCNNNNNNNGC 5 cut(s) 240, 243, 288, 325, 405
NdeII GATC 2 cut(s) 123, 260
NlaIII CATG 5 cut(s) 49, 119, 154, 191, 521
NlaIV GGNNCC 3 cut(s) 6, 423, 465
NmuCI GTSAC 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 6 cut(s) 179, 236, 245, 321, 407, 532
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
Ppu21I YACGTR 2 cut(s) 199, 343
PspCI CACGTG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 6, 423, 465
PspPI GGNCC 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 218
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 2 cut(s) 177, 234
RsaI GTAC 4 cut(s) 51, 212, 224, 257
RsaNI GTAC 4 cut(s) 50, 211, 223, 256
SaqAI TTAA 2 cut(s) 378, 566
SatI GCNGC 6 cut(s) 178, 235, 244, 320, 406, 531
Sau3AI GATC 2 cut(s) 123, 260
Sau96I GGNCC 1 cut(s) 304
SduI GDGCHC 2 cut(s) 198, 297
SetI ASST 9 cut(s) 55, 99, 179, 195, 201, 236, 315, 345, 401
SfaNI GCATC 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 539
SsiI CCGC 5 cut(s) 291, 328, 405, 408, 442
SspI AATATT 1 cut(s) 484
TaaI ACNGT 2 cut(s) 255, 376
TaiI ACGT 5 cut(s) 55, 195, 201, 315, 345
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 539
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 2 cut(s) 378, 566
Tru9I TTAA 2 cut(s) 378, 566
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 5 cut(s) 177, 234, 243, 319, 530
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 122, 139
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 432
VneI GTGCAC 1 cut(s) 194
XapI RAATTY 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.