MD15G1091300.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016226
Physical Location & Seq
Reverse (-)
6344815 .. 6345411
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1091300.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGAACCTACAAATACACCGTTCATAGCCAAGAAATTAGGCAACATGGTACGTCTAGTTTTGTTCACCTTACAAAAGGGTGTGTCCAAGAAAAAGTTGACGATGATGAAACATGGGAAGATCTTAGGCAAGTCTTTCAATGATTTCATGGTCCGTCACCAAACTGCGCTTAGCTGCAAGTCGCACGACGTGCACGTGGCGTCGTTCGTGTACCCGTTGGAGTACGAGTTCAGCTGCACCAGCAGCCCGCCACGCAGGTCATCCTACACTCCTCCGTGTCAATCCGGCAAGGCGTACAAGGGCCGTTATGTTAGGCAGCATTCGCGGAGGGGAGCTTACGTGCCGATGATGTGCGAGGATGCATTGGCGACGGTTCATGGGGTGAGGAAAGTGAATTATCGTTGCAGTGACGTGGTCGAGCCGCTGCCAATGGTGAGGCGGGCGCGGGTGAGGATAAGGGAGTGGGAGTCTTTGTTTCCGTTGAGTAGTGATGAGGAGGAGGATTACCACGTGGACAAGGCAGCCCAGGAATTTATTGACAAGTTTTATAGAGAGTTAATGTTGCAAAAGTGGATGGCTGCAGGTCGATACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

9.64

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 246, 572
AccII CGCG 2 cut(s) 325, 445
AciI CCGC 5 cut(s) 248, 325, 422, 439, 445
AcsI RAATTY 1 cut(s) 530
AcvI CACGTG 2 cut(s) 196, 511
AcyI GRCGYC 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 4 cut(s) 51, 212, 224, 296
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 2 cut(s) 190, 412
AjnI CCWGG 1 cut(s) 525
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 174, 234, 335, 594
AluI AGCT 4 cut(s) 174, 234, 335, 594
Alw21I GWGCWC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 191
AoxI GGCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 7 cut(s) 174, 234, 243, 316, 424, 521, 578
ApoI RAATTY 1 cut(s) 530
AspLEI GCGC 2 cut(s) 169, 445
AspS9I GGNCC 2 cut(s) 151, 301
AsuHPI GGTGA 5 cut(s) 58, 149, 394, 445, 460
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 195
BbrPI CACGTG 2 cut(s) 196, 511
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BccI CCATC 1 cut(s) 568
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 527
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 2 cut(s) 246, 572
BglII AGATCT 1 cut(s) 120
BisI GCNGC 8 cut(s) 175, 235, 244, 317, 422, 425, 522, 579
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 8 cut(s) 176, 236, 245, 318, 423, 426, 523, 580
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 151
BmgBI CACGTC 2 cut(s) 190, 412
BmgT120I GGNCC 2 cut(s) 151, 301
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 170
BsaAI YACGTR 3 cut(s) 196, 340, 511
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 525
BsaXI ACNNNNNCTCC 8 cut(s) 212, 242, 324, 354, 452, 458, 482, 488
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 260, 364, 579
BseRI GAGGAG 3 cut(s) 261, 509, 512
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 2 cut(s) 325, 445
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 285
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 120
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 5 cut(s) 248, 325, 422, 439, 445
BspANI GGCC 1 cut(s) 303
BspFNI CGCG 2 cut(s) 325, 445
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 2 cut(s) 246, 572
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 21, 373
BstACI GRCGYC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 190
BstBAI YACGTR 3 cut(s) 196, 340, 511
BstC8I GCNNGC 2 cut(s) 248, 441
BstDEI CTNAG 2 cut(s) 124, 170
BstF5I GGATG 3 cut(s) 260, 364, 579
BstFNI CGCG 2 cut(s) 325, 445
BstHHI GCGC 2 cut(s) 169, 445
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 5 cut(s) 190, 240, 243, 252, 322
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 2 cut(s) 325, 445
BstV1I GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 303
BtrI CACGTC 2 cut(s) 190, 412
BtsCI GGATG 3 cut(s) 260, 364, 579
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
BveI ACCTGC 2 cut(s) 246, 572
Cac8I GCNNGC 2 cut(s) 248, 441
CfoI GCGC 2 cut(s) 169, 445
Cfr13I GGNCC 2 cut(s) 151, 301
CseI GACGC 1 cut(s) 189
Csp6I GTAC 4 cut(s) 50, 211, 223, 295
CviAII CATG 4 cut(s) 46, 113, 148, 377
CviQI GTAC 4 cut(s) 50, 211, 223, 295
DdeI CTNAG 2 cut(s) 124, 170
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraIII CACNNNGTG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 151
Eco72I CACGTG 2 cut(s) 196, 511
EcoRII CCWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 4 cut(s) 49, 116, 151, 380
FaiI YATR 7 cut(s) 26, 47, 114, 149, 309, 378, 549
FatI CATG 4 cut(s) 45, 112, 147, 376
FauI CCCGC 3 cut(s) 255, 432, 438
Fnu4HI GCNGC 8 cut(s) 175, 235, 244, 317, 422, 425, 522, 579
FokI GGATG 3 cut(s) 247, 371, 586
Fsp4HI GCNGC 8 cut(s) 175, 235, 244, 317, 422, 425, 522, 579
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 168, 444
GluI GCNGC 8 cut(s) 175, 235, 244, 317, 422, 425, 522, 579
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 189
HhaI GCGC 2 cut(s) 169, 445
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 4 cut(s) 49, 116, 151, 380
Hin6I GCGC 2 cut(s) 167, 443
HinP1I GCGC 2 cut(s) 167, 443
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 467
HpaII CCGG 1 cut(s) 285
HphI GGTGA 5 cut(s) 58, 149, 394, 445, 460
Hpy166II GTNNAC 5 cut(s) 66, 99, 193, 211, 514
Hpy8I GTNNAC 5 cut(s) 66, 99, 193, 211, 514
Hpy99I CGWCG 3 cut(s) 191, 205, 373
HpyCH4III ACNGT 2 cut(s) 21, 373
HpyCH4IV ACGT 6 cut(s) 52, 189, 195, 339, 411, 510
HpyCH4V TGCA 7 cut(s) 177, 193, 237, 362, 405, 565, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 190, 240, 243, 252, 322
HpyF3I CTNAG 2 cut(s) 124, 170
HpySE526I ACGT 6 cut(s) 52, 189, 195, 339, 411, 510
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 4 cut(s) 49, 116, 151, 380
HspAI GCGC 2 cut(s) 167, 443
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 6 cut(s) 241, 253, 298, 512, 539, 567
Lsp1109I GCAGC 7 cut(s) 161, 221, 255, 328, 411, 533, 565
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 56
MaeII ACGT 6 cut(s) 52, 189, 195, 339, 411, 510
MaeIII GTNAC 2 cut(s) 155, 407
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 130
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 3 cut(s) 35, 394, 530
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 9 cut(s) 282, 321, 349, 378, 429, 444, 487, 490, 493
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 557
MspA1I CMGCKG 3 cut(s) 234, 424, 594
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 325, 445
MwoI GCNNNNNNNGC 5 cut(s) 190, 240, 243, 252, 322
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 49, 116, 151, 380
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 155, 407
NsiI ATGCAT 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 413
PkrI GCNGC 8 cut(s) 176, 236, 245, 318, 423, 426, 523, 580
PleI GAGTC 1 cut(s) 475
PmaCI CACGTG 2 cut(s) 196, 511
PmlI CACGTG 2 cut(s) 196, 511
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 3 cut(s) 196, 340, 511
Psp6I CCWGG 1 cut(s) 525
PspCI CACGTG 2 cut(s) 196, 511
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 151, 301
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 2 cut(s) 234, 594
RsaI GTAC 4 cut(s) 51, 212, 224, 296
RsaNI GTAC 4 cut(s) 50, 211, 223, 295
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 8 cut(s) 175, 235, 244, 317, 422, 425, 522, 579
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 151, 301
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 151
Sse9I AATT 3 cut(s) 35, 394, 530
SsiI CCGC 5 cut(s) 248, 325, 422, 439, 445
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 21, 373
TaiI ACGT 6 cut(s) 55, 192, 198, 342, 414, 513
TaqI TCGA 2 cut(s) 417, 586
TasI AATT 3 cut(s) 35, 394, 530
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 155, 407
TseI GCWGC 7 cut(s) 174, 234, 243, 316, 424, 521, 578
Tsp45I GTSAC 2 cut(s) 155, 407
TspDTI ATGAA 4 cut(s) 13, 122, 136, 365
TspGWI ACGGA 3 cut(s) 143, 264, 468
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 413
VneI GTGCAC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 530
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.