Rh6AG461800

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016226
Physical Location & Seq
Reverse (-)
64518760 .. 64519735
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG461800.1

Sequence Viewer

Length: 588 bp
ATGGAATCTACTACCACACCAGAGATAGCAAAGAAGCTAAGCAACATGTTACGTCTAATGAAGAAACGTGGCAAGATCCTAGGCAAGTCGGTAAACGACTTCATACTCCGCCACCACACCACCCTCGACTCAGTCCGCTGCCGCTCACTCGACGACGTGCACGTGTCATTCGTGTACCCCATGGAGTACGAGTTCAGCTGCAGCAGCAGCCCACCACACCACCAACGGTCGCGTACACCCGGCCACCTTAGCAGCAGCAAGCGCAACAACATCAACTACTACAACGGCCGTTATCATCACCAGCACTCGCGGCGGTCCGTTTACGTGCCGATGATGTGCGAAGACGTTTTGGGGAGTAAGAATGTGTCCTTCTGCGGCGGTGACGTGGTGGAGCCGCTGCGGCTGAGGCCGAGGGTGAGGAAGGTTAGGATAACGGAGTGGGAGCCGTTATTTCCGTTGAACACCAGTGAAGAAGAGGAGGAGGAGGAGGAGTGGCATGTGGACAAGGCAGCGCAGGAATTCATCGACAAGTTTTATCGGGATCTAATGTTGCAAAAGTGGAATTCGGTAGCAGATCGATGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

195

Amino Acids

23.0

Weight (kDa)

8.57

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccII CGCG 2 cut(s) 232, 310
AciI CCGC 9 cut(s) 109, 136, 142, 310, 313, 375, 378, 395, 400
AclWI GGATC 2 cut(s) 70, 549
AcoI YGGCCR 2 cut(s) 241, 286
AcsI RAATTY 2 cut(s) 518, 562
AcvI CACGTG 1 cut(s) 163
AfaI GTAC 3 cut(s) 176, 188, 235
AflIII ACRYGT 2 cut(s) 45, 162
AgsI TTSAA 1 cut(s) 460
AjiI CACGTC 2 cut(s) 157, 385
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 37, 198
AluI AGCT 2 cut(s) 37, 198
Alw21I GWGCWC 1 cut(s) 162
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 2 cut(s) 70, 549
AoxI GGCC 3 cut(s) 241, 286, 407
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 9 cut(s) 138, 198, 201, 204, 207, 252, 255, 397, 509
ApoI RAATTY 2 cut(s) 518, 562
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 2 cut(s) 264, 514
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 290, 392, 427
AvaII GGWCC 1 cut(s) 315
AvrII CCTAGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 9 cut(s) 125, 185, 213, 216, 219, 264, 267, 384, 521
BceAI ACGGC 3 cut(s) 273, 301, 430
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 400
BlnI CCTAGG 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 315
BmgBI CACGTC 2 cut(s) 157, 385
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 393, 444
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 348
Bpu10I CCTNAGC 2 cut(s) 248, 404
Bpu1102I GCTNAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 577
BsaAI YACGTR 2 cut(s) 163, 325
BsaJI CCNNGG 3 cut(s) 79, 180, 410
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 476, 506
Bse1I ACTGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 3 cut(s) 79, 180, 410
BseMII CTCAG 2 cut(s) 144, 395
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 5 cut(s) 491, 494, 497, 500, 503
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 9 cut(s) 125, 185, 213, 216, 219, 264, 267, 384, 521
Bsh1236I CGCG 2 cut(s) 232, 310
Bsh1285I CGRYCG 2 cut(s) 230, 289
BshFI GGCC 3 cut(s) 243, 288, 409
BshVI ATCGAT 1 cut(s) 577
BsiEI CGRYCG 2 cut(s) 230, 289
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 240
BsnI GGCC 3 cut(s) 243, 288, 409
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 75, 541, 574
Bsp1720I GCTNAGC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 9 cut(s) 109, 136, 142, 310, 313, 375, 378, 395, 400
BspANI GGCC 3 cut(s) 243, 288, 409
BspCNI CTCAG 2 cut(s) 143, 396
BspDI ATCGAT 1 cut(s) 577
BspFNI CGCG 2 cut(s) 232, 310
BspLI GGNNCC 2 cut(s) 393, 444
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 2 cut(s) 70, 549
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 79, 180, 410
BssMI GATC 3 cut(s) 75, 541, 574
BssT1I CCWWGG 2 cut(s) 79, 180
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 468
BstBAI YACGTR 2 cut(s) 163, 325
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 4 cut(s) 38, 130, 248, 404
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 232, 310
BstHHI GCGC 2 cut(s) 264, 514
BstKTI GATC 3 cut(s) 78, 544, 577
BstMBI GATC 3 cut(s) 75, 541, 574
BstMCI CGRYCG 2 cut(s) 230, 289
BstMWI GCNNNNNNNGC 7 cut(s) 204, 207, 249, 261, 310, 400, 406
BstNSI RCATGY 2 cut(s) 49, 500
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 2 cut(s) 232, 310
BstV1I GCAGC 9 cut(s) 125, 185, 213, 216, 219, 264, 267, 384, 521
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 2 cut(s) 75, 541
BstYI RGATCY 2 cut(s) 75, 541
BstZI CGGCCG 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 577
BsuRI GGCC 3 cut(s) 243, 288, 409
BsuTUI ATCGAT 1 cut(s) 577
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 2 cut(s) 157, 385
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 2 cut(s) 264, 514
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 577
CpoI CGGWCCG 1 cut(s) 315
Csp6I GTAC 3 cut(s) 175, 187, 234
CspI CGGWCCG 1 cut(s) 315
CviAII CATG 3 cut(s) 46, 181, 497
CviJI RGCY 9 cut(s) 37, 198, 210, 243, 288, 394, 403, 409, 445
CviKI_1 RGCY 9 cut(s) 37, 198, 210, 243, 288, 394, 403, 409, 445
CviQI GTAC 3 cut(s) 175, 187, 234
DdeI CTNAG 4 cut(s) 38, 130, 248, 404
DpnI GATC 3 cut(s) 77, 543, 576
DpnII GATC 3 cut(s) 75, 541, 574
EaeI YGGCCR 2 cut(s) 241, 286
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 79, 180
Eco47I GGWCC 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 163
EcoRI GAATTC 2 cut(s) 518, 562
EcoT14I CCWWGG 2 cut(s) 79, 180
ErhI CCWWGG 2 cut(s) 79, 180
FaeI CATG 3 cut(s) 49, 184, 500
FaiI YATR 4 cut(s) 47, 104, 182, 498
FatI CATG 3 cut(s) 45, 180, 496
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 263, 513
HaeIII GGCC 3 cut(s) 243, 288, 409
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 264, 514
Hin1II CATG 3 cut(s) 49, 184, 500
Hin6I GCGC 2 cut(s) 262, 512
HinP1I GCGC 2 cut(s) 262, 512
HinfI GANTC 2 cut(s) 5, 128
HpaII CCGG 1 cut(s) 240
HphI GGTGA 3 cut(s) 290, 392, 427
Hpy166II GTNNAC 6 cut(s) 94, 160, 175, 236, 322, 502
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 6 cut(s) 94, 160, 175, 236, 322, 502
Hpy99I CGWCG 2 cut(s) 155, 158
HpyAV CCTTC 2 cut(s) 379, 415
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
HpyCH4V TGCA 3 cut(s) 160, 201, 553
HpyF10VI GCNNNNNNNGC 7 cut(s) 204, 207, 249, 261, 310, 400, 406
HpyF3I CTNAG 4 cut(s) 38, 130, 248, 404
HpySE526I ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
Hsp92II CATG 3 cut(s) 49, 184, 500
HspAI GCGC 2 cut(s) 262, 512
Kzo9I GATC 3 cut(s) 75, 541, 574
LmnI GCTCC 2 cut(s) 391, 442
LpnPI CCDG 5 cut(s) 33, 253, 314, 478, 500
Lsp1109I GCAGC 9 cut(s) 125, 185, 213, 216, 219, 264, 267, 384, 521
LweI GCATC 1 cut(s) 569
MaeI CTAG 1 cut(s) 80
MaeII ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
MaeIII GTNAC 2 cut(s) 48, 380
MalI GATC 3 cut(s) 77, 543, 576
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 75, 541, 574
MboII GAAGA 4 cut(s) 73, 353, 482, 485
MflI RGATCY 2 cut(s) 75, 541
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 518, 562
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 9 cut(s) 134, 399, 405, 411, 469, 472, 475, 478, 481
MspA1I CMGCKG 3 cut(s) 138, 198, 397
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 232, 310
MwoI GCNNNNNNNGC 7 cut(s) 204, 207, 249, 261, 310, 400, 406
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 180
NdeII GATC 3 cut(s) 75, 541, 574
NlaIII CATG 3 cut(s) 49, 184, 500
NlaIV GGNNCC 2 cut(s) 393, 444
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 2 cut(s) 49, 500
PciI ACATGT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 168
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 122
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 2 cut(s) 163, 325
PscI ACATGT 1 cut(s) 45
PspCI CACGTG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 393, 444
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 75, 541
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 3 cut(s) 176, 188, 235
RsaNI GTAC 3 cut(s) 175, 187, 234
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
Sau3AI GATC 3 cut(s) 75, 541, 574
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 315
Sse9I AATT 2 cut(s) 518, 562
SsiI CCGC 9 cut(s) 109, 136, 142, 310, 313, 375, 378, 395, 400
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 79, 180
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 7 cut(s) 55, 70, 159, 165, 327, 348, 387
TaqI TCGA 4 cut(s) 126, 150, 525, 577
TasI AATT 2 cut(s) 518, 562
TauI GCSGC 5 cut(s) 144, 313, 378, 397, 403
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 9 cut(s) 138, 198, 201, 204, 207, 252, 255, 397, 509
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 74, 91, 511
TspGWI ACGGA 3 cut(s) 307, 444, 449
TspRI CASTG 1 cut(s) 472
Tth111I GACNNNGTC 1 cut(s) 131
VneI GTGCAC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 2 cut(s) 518, 562
XceI RCATGY 2 cut(s) 49, 500
XmaJI CCTAGG 1 cut(s) 79
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.