AT4G33420

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014079
Physical Location & Seq
Forward (+)
16084713 .. 16086388
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33420.1

Sequence Viewer

Length: 978 bp
ATGTTGACTAGATTTAAGAAACAAAATAATAAGATGGTTAGGGCAAATATAGTGAGCATGGTTCTGTTGATGCATGCCATCGTTGGGTTTCCTTTTCATGCGAGGGGATTAAGTATGACTTACTACATGATGAGCTGTCCTTTCGCTGAACAGATTGTGAAGAACAGTGTTAACAATGCTCTTCAAGCCGATCCCACTTTAGCCGCTGGTCTTATCCGTATGTTGTTCCACGACTGTTTCATCGAGGGATGTGATGCGTCAATTCTGCTAGATTCAACGAAAGACAACACTGCGGAAAAGGATTCGCCTGCGAATCTGAGTCTACGTGGCTACGAGATCATCGATGATGCAAAGGAGAAAATCGAGAATAGATGTCCAGGAGTTGTATCATGCGCAGATATAGTTGCCATGGCTGCTAGAGATGCTGTCTTTTGGGCTGGTGGTCCATATTATGACATACCGAAAGGAAGGTTTGATGGTAAAAGATCAAAGATAGAAGATACAAGAAATCTACCTTCACCTTTTCTTAATGCCTCTCAACTCATTCAAACTTTTGGCCAACGTGGTTTCACTCCACAAGATGTTGTTGCTCTCTCTGGAGCACATACCCTAGGAGTTGCACGATGCTCCTCCTTCAAGGCTAGACTTACCGTCCCAGACTCTTCATTAGACTCGACTTTTGCAAACACTCTCTCTAAAACATGCAGCGCGGGTGACAATGCAGAGCAACCCTTTGATGCTACGCGCAACGATTTCGACAATGCTTACTTCAATGCGCTTCAGATGAAATCAGGAGTCCTCTTTTCAGACCAAACTTTATTCAACACACCAAGGACCAGGAATCTTGTTAACGGCTATGCACTTAACCAAGCCAAGTTCTTCTTTGATTTCCAACAGGCCATGCGCAAGATGAGCAATCTTGATGTTAAACTTGGCTCTCAAGGTGAAGTCCGTCAAAATTGTCGGAGTATTAATTAG

Protein Analysis

325

Amino Acids

35.97

Weight (kDa)

8.57

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 287 2.9e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33420 AT4G33420
fragaria_vesca FvH4_3g20670 FvH4_3g20670
malus_domestica MD03G1223300.v1.1 MD11G1241100.v1.1
prunus_persica Prupe.4G186300_v2.0.a1
pyrus_communis pycom03g17160 pycom11g21270
rosa_chinensis RchiOBHm_Chr5g0034661
rosa_laevigata RLG00000033570
rosa_multiflora Rmu_sc0002460.1_g000077
rosa_roxburghii Rroxscaffold_1G00045630
rosa_rugosa Rorug05G0147700
rosa_samantha Rh5AG240100 Rh5DG248800
rosa_wichuraiana Rw5G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 394, 905
AccI GTMKAC 1 cut(s) 322
AccII CGCG 2 cut(s) 710, 745
AciI CCGC 3 cut(s) 204, 293, 710
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 764
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 6 cut(s) 185, 276, 548, 637, 772, 823
AhdI GACNNNNNGTC 1 cut(s) 650
AjnI CCWGG 2 cut(s) 376, 836
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 604
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 556, 897
ApeKI GCWGC 2 cut(s) 413, 705
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AseI ATTAAT 1 cut(s) 972
AspA2I CCTAGG 1 cut(s) 610
AspLEI GCGC 5 cut(s) 395, 710, 747, 778, 906
AspS9I GGNCC 2 cut(s) 443, 834
AsuHPI GGTGA 3 cut(s) 510, 725, 956
AvaII GGWCC 2 cut(s) 443, 834
AvrII CCTAGG 1 cut(s) 610
BalI TGGCCA 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 400, 717
BccI CCATC 3 cut(s) 28, 86, 470
BceAI ACGGC 1 cut(s) 868
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BciT130I CCWGG 2 cut(s) 378, 838
BfaI CTAG 5 cut(s) 9, 269, 417, 611, 642
BisI GCNGC 3 cut(s) 204, 414, 706
BlnI CCTAGG 1 cut(s) 610
BlsI GCNGC 3 cut(s) 205, 415, 707
Bme1390I CCNGG 2 cut(s) 378, 838
Bme18I GGWCC 2 cut(s) 443, 834
BmeRI GACNNNNNGTC 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 443, 834
BmrFI CCNGG 2 cut(s) 378, 838
BmsI GCATC 6 cut(s) 60, 244, 337, 412, 614, 727
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 924
Bsa29I ATCGAT 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 408, 610, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 378, 838
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 408, 610, 830
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 619
BseXI GCAGC 2 cut(s) 400, 717
Bsh1236I CGCG 2 cut(s) 710, 745
BshFI GGCC 2 cut(s) 558, 899
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 604
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 2 cut(s) 558, 899
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 3 cut(s) 190, 336, 485
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 3 cut(s) 204, 293, 710
BspANI GGCC 2 cut(s) 558, 899
BspCNI CTCAG 1 cut(s) 309
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 2 cut(s) 710, 745
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 408, 610, 830
BssMI GATC 3 cut(s) 190, 336, 485
BssT1I CCWWGG 3 cut(s) 408, 610, 830
Bst2UI CCWGG 2 cut(s) 378, 838
Bst4CI ACNGT 3 cut(s) 167, 236, 652
Bst6I CTCTTC 2 cut(s) 186, 667
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 75, 309
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 2 cut(s) 710, 745
BstHHI GCGC 5 cut(s) 395, 710, 747, 778, 906
BstKTI GATC 3 cut(s) 193, 339, 488
BstMBI GATC 3 cut(s) 190, 336, 485
BstMWI GCNNNNNNNGC 4 cut(s) 185, 413, 422, 912
BstNI CCWGG 2 cut(s) 378, 838
BstNSI RCATGY 2 cut(s) 77, 705
BstSCI CCNGG 2 cut(s) 376, 836
BstUI CGCG 2 cut(s) 710, 745
BstV1I GCAGC 2 cut(s) 400, 717
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 2 cut(s) 558, 899
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 172, 288
Cac8I GCNNGC 2 cut(s) 75, 309
CfoI GCGC 5 cut(s) 395, 710, 747, 778, 906
Cfr13I GGNCC 2 cut(s) 443, 834
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 246
CviAII CATG 8 cut(s) 58, 74, 98, 127, 390, 409, 702, 901
DdeI CTNAG 1 cut(s) 317
DpnI GATC 3 cut(s) 192, 338, 487
DpnII GATC 3 cut(s) 190, 336, 485
DriI GACNNNNNGTC 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 186, 667
Eam1105I GACNNNNNGTC 1 cut(s) 650
EarI CTCTTC 2 cut(s) 186, 667
Eco130I CCWWGG 3 cut(s) 408, 610, 830
Eco47I GGWCC 2 cut(s) 443, 834
Eco57I CTGAAG 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 376, 836
EcoT14I CCWWGG 3 cut(s) 408, 610, 830
EcoT22I ATGCAT 1 cut(s) 75
ErhI CCWWGG 3 cut(s) 408, 610, 830
FaeI CATG 8 cut(s) 61, 77, 101, 130, 393, 412, 705, 904
FalI AAGNNNNNCTT 4 cut(s) 103, 135, 866, 898
FaqI GGGAC 1 cut(s) 638
FatI CATG 8 cut(s) 57, 73, 97, 126, 389, 408, 701, 900
FauI CCCGC 1 cut(s) 703
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 204, 414, 706
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 3 cut(s) 204, 414, 706
FspBI CTAG 5 cut(s) 9, 269, 417, 611, 642
FspI TGCGCA 2 cut(s) 394, 905
GlaI GCGC 5 cut(s) 394, 709, 746, 777, 905
GluI GCNGC 3 cut(s) 204, 414, 706
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 558, 899
HgaI GACGC 1 cut(s) 246
HhaI GCGC 5 cut(s) 395, 710, 747, 778, 906
Hin1II CATG 8 cut(s) 61, 77, 101, 130, 393, 412, 705, 904
Hin6I GCGC 5 cut(s) 393, 708, 745, 776, 904
HinP1I GCGC 5 cut(s) 393, 708, 745, 776, 904
HincII GTYRAC 3 cut(s) 6, 172, 850
HindII GTYRAC 3 cut(s) 6, 172, 850
HinfI GANTC 8 cut(s) 272, 302, 313, 319, 659, 671, 795, 841
HpaI GTTAAC 2 cut(s) 172, 850
HphI GGTGA 3 cut(s) 510, 725, 956
Hpy166II GTNNAC 4 cut(s) 6, 172, 323, 850
Hpy188I TCNGA 4 cut(s) 318, 783, 808, 966
Hpy188III TCNNGA 4 cut(s) 364, 597, 792, 920
Hpy8I GTNNAC 4 cut(s) 6, 172, 323, 850
HpyAV CCTTC 3 cut(s) 462, 525, 643
HpyCH4III ACNGT 3 cut(s) 167, 236, 652
HpyCH4IV ACGT 2 cut(s) 325, 562
HpyCH4V TGCA 7 cut(s) 73, 350, 620, 683, 705, 722, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 413, 422, 912
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 2 cut(s) 325, 562
Hsp92II CATG 8 cut(s) 61, 77, 101, 130, 393, 412, 705, 904
HspAI GCGC 5 cut(s) 393, 708, 745, 776, 904
KspAI GTTAAC 2 cut(s) 172, 850
Kzo9I GATC 3 cut(s) 190, 336, 485
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 599, 632
Lsp1109I GCAGC 2 cut(s) 400, 717
LweI GCATC 6 cut(s) 60, 244, 337, 412, 614, 727
MaeI CTAG 5 cut(s) 9, 269, 417, 611, 642
MaeII ACGT 2 cut(s) 325, 562
MaeIII GTNAC 1 cut(s) 713
MalI GATC 3 cut(s) 192, 338, 487
MboI GATC 3 cut(s) 190, 336, 485
MboII GAAGA 5 cut(s) 172, 173, 509, 654, 871
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 3 cut(s) 261, 958, 973
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 4 cut(s) 328, 653, 665, 804
MmeI TCCRAC 2 cut(s) 916, 944
MnlI CCTC 5 cut(s) 96, 238, 544, 640, 809
Mox20I TGGCCA 1 cut(s) 558
Mph1103I ATGCAT 1 cut(s) 75
MscI TGGCCA 1 cut(s) 558
MseI TTAA 8 cut(s) 15, 110, 171, 528, 849, 864, 927, 972
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 378, 838
MvaI CCWGG 2 cut(s) 378, 838
MvnI CGCG 2 cut(s) 710, 745
MwoI GCNNNNNNNGC 4 cut(s) 185, 413, 422, 912
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 190, 336, 485
NlaIII CATG 8 cut(s) 61, 77, 101, 130, 393, 412, 705, 904
NmuCI GTSAC 1 cut(s) 713
NsbI TGCGCA 2 cut(s) 394, 905
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 2 cut(s) 77, 705
PaeI GCATGC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 4 cut(s) 272, 302, 313, 841
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 205, 415, 707
PleI GAGTC 4 cut(s) 327, 653, 665, 803
PpsI GAGTC 4 cut(s) 327, 653, 665, 803
Ppu21I YACGTR 1 cut(s) 326
PshBI ATTAAT 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 376, 836
PspGI CCWGG 2 cut(s) 376, 836
PspPI GGNCC 2 cut(s) 443, 834
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 8 cut(s) 15, 110, 171, 528, 849, 864, 927, 972
SatI GCNGC 3 cut(s) 204, 414, 706
Sau3AI GATC 3 cut(s) 190, 336, 485
Sau96I GGNCC 2 cut(s) 443, 834
SchI GAGTC 4 cut(s) 328, 653, 665, 804
ScrFI CCNGG 2 cut(s) 378, 838
SduI GDGCHC 1 cut(s) 604
SetI ASST 7 cut(s) 137, 328, 473, 517, 523, 565, 946
SfaNI GCATC 6 cut(s) 60, 244, 337, 412, 614, 727
SinI GGWCC 2 cut(s) 443, 834
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
SphI GCATGC 1 cut(s) 77
Sse9I AATT 3 cut(s) 261, 958, 973
SsiI CCGC 3 cut(s) 204, 293, 710
SspMI CTAG 5 cut(s) 9, 269, 417, 611, 642
StyD4I CCNGG 2 cut(s) 376, 836
StyI CCWWGG 3 cut(s) 408, 610, 830
TaaI ACNGT 3 cut(s) 167, 236, 652
TaiI ACGT 2 cut(s) 328, 565
TaqI TCGA 5 cut(s) 243, 342, 363, 674, 756
TasI AATT 3 cut(s) 261, 958, 973
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 272, 302, 313, 841
Tru1I TTAA 8 cut(s) 15, 110, 171, 528, 849, 864, 927, 972
Tru9I TTAA 8 cut(s) 15, 110, 171, 528, 849, 864, 927, 972
TscAI CASTG 2 cut(s) 172, 295
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 413, 705
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 86, 229, 654, 800
TspGWI ACGGA 2 cut(s) 206, 941
TspRI CASTG 2 cut(s) 172, 295
VpaK11BI GGWCC 2 cut(s) 443, 834
VspI ATTAAT 1 cut(s) 972
XceI RCATGY 2 cut(s) 77, 705
XmaJI CCTAGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 5 cut(s) 9, 269, 417, 611, 642
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.