Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014079

Physical Location & Seq

Genomic Coordinates Reverse (-)

18334630 .. 18337353

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTTATTGCTAAGCAGTTTGTAGTGTTTCTACTAATGCAAATGATTAGTGGCTTCCCATTTCGAGCAAATGGTTTGAGTATGGGCTATTACATTATGAGCTGTCCGATGGCTGAACTTATTGTCAGAAATACAGTCACCAGAGCCTTGCACGCCGATCCAACTTTAGCAGCAGGTCTGATCAGAATGCACTTCCATGACTGCTTCATAGAGGGATGTGATGCGTCAATTCTCCTGGATTCAACAAAAGATAACAAGGCTGAGAAGGACTCCCCAGCAAATTTGAGCTTGCGTGGCTATGAAGTTATAGATGATGCAAAAGAGGAACTTGAAGAACAATGCCCTGGTGTTGTCTCTTGCGCCGACATAGTTGCAATGGCTTCTACTTATGCAGTTTTTGCGGCTGGGGGTCCGGTATATGACATACCCAAAGGAAGAAAGGATGGAAGTAGGTCTAAAATAGAAGACACAAGAAATCTGCCTCCACCCACCTTGAATGCCTCTGAGCTCGTCACAATGTTTGGGCAACATGGATTTACTGCGCAAGAAATGGTTGCTTTATCTGGTGCTCACACACTAGGAGTAGCCAGGTGCTCCTCATTCAAAAACCGATTGAGTGGTACTGTGGATCCAAATTTAGATTCGGGCTTTGCAAAGCAACTGGCCAAAACATGCAGCGCAGGCGATAACGCGGAGCAACCCTTCGATGCAACGAGAAACATTTTTGATAATGTCTACTTCAACGGACTGCAAAGGAAGGCTGGAGTCCTGAGTTCTGATCAAACCCTATTTGCCAGTGCAAGAACTAGAAACATTGTAAACGGTTATGCCTTCAACCAAGCTATGTTCTTCTTAGATTTTCAACAGGCGATGGTGAAAATGAGCACCCTTGATGTCAAGGAAGGTTCGAAAGGAGAAGTAAGAAAAGACTGCCGCAAAATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

316

Amino Acids

34.38

Weight (kDa)

6.23

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33420 AT4G33420
fragaria_vesca	FvH4_3g20670 FvH4_3g20670
malus_domestica	MD03G1223300.v1.1 MD11G1241100.v1.1
prunus_persica	Prupe.4G186300_v2.0.a1
pyrus_communis	pycom03g17160 pycom11g21270
rosa_chinensis	RchiOBHm_Chr5g0034661
rosa_laevigata	RLG00000033570
rosa_multiflora	Rmu_sc0002460.1_g000077
rosa_roxburghii	Rroxscaffold_1G00045630
rosa_rugosa	Rorug05G0147700
rosa_samantha	Rh5AG240100 Rh5DG248800
rosa_wichuraiana	Rw5G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	692
AciI	CCGC	3 cut(s)	401, 692, 934
AclWI	GGATC	3 cut(s)	152, 623, 636
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	280, 634
AfaI	GTAC	1 cut(s)	622
AgsI	TTSAA	7 cut(s)	243, 332, 496, 604, 742, 835, 863
AjnI	CCWGG	3 cut(s)	234, 343, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AluBI	AGCT	4 cut(s)	102, 288, 508, 842
AluI	AGCT	4 cut(s)	102, 288, 508, 842
Alw21I	GWGCWC	4 cut(s)	510, 571, 596, 887
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	152, 623, 636
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	170, 675
ApoI	RAATTY	2 cut(s)	280, 634
AspLEI	GCGC	3 cut(s)	362, 544, 680
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	130, 886
AsuII	TTCGAA	1 cut(s)	908
AvaII	GGWCC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	4 cut(s)	510, 571, 596, 887
BbvI	GCAGC	2 cut(s)	182, 687
BccI	CCATC	3 cut(s)	103, 437, 865
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	3 cut(s)	236, 345, 589
BclI	TGATCA	2 cut(s)	180, 778
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	578, 807
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	4 cut(s)	171, 402, 676, 934
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	4 cut(s)	172, 403, 677, 935
Bme1390I	CCNGG	3 cut(s)	236, 345, 589
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	411, 630
BmrFI	CCNGG	3 cut(s)	236, 345, 589
BmsI	GCATC	3 cut(s)	211, 304, 697
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	908
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	666, 795
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	3 cut(s)	236, 345, 589
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	221, 448
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	252, 495, 761
BseNI	ACTGG	2 cut(s)	666, 795
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	182, 687
BseYI	CCCAGC	2 cut(s)	274, 404
Bsh1236I	CGCG	1 cut(s)	692
BshFI	GGCC	1 cut(s)	665
BsiHKAI	GWGCWC	4 cut(s)	510, 571, 596, 887
BsiSI	CCGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	192, 502
BsnI	GGCC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	908
Bsp1286I	GDGCHC	4 cut(s)	510, 571, 596, 887
Bsp143I	GATC	4 cut(s)	157, 180, 628, 778
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	401, 692, 934
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	253, 496, 762
BspFNI	CGCG	1 cut(s)	692
BspLI	GGNNCC	2 cut(s)	411, 630
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	152, 623, 636
BspT104I	TTCGAA	1 cut(s)	908
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	666, 795
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	157, 180, 628, 778
Bst2UI	CCWGG	3 cut(s)	236, 345, 589
Bst4CI	ACNGT	3 cut(s)	136, 625, 824
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	908
BstC8I	GCNNGC	3 cut(s)	153, 290, 682
BstDEI	CTNAG	5 cut(s)	12, 261, 504, 770, 853
BstF5I	GGATG	2 cut(s)	221, 448
BstFNI	CGCG	1 cut(s)	692
BstHHI	GCGC	3 cut(s)	362, 544, 680
BstKTI	GATC	4 cut(s)	160, 183, 631, 781
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	4 cut(s)	157, 180, 628, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 294, 398, 681
BstNI	CCWGG	3 cut(s)	236, 345, 589
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	234, 343, 587
BstUI	CGCG	1 cut(s)	692
BstV1I	GCAGC	2 cut(s)	182, 687
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	884
BtsCI	GGATG	2 cut(s)	221, 448
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	153, 290, 682
CfoI	GCGC	3 cut(s)	362, 544, 680
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	621
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	3 cut(s)	197, 530, 672
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	5 cut(s)	12, 261, 504, 770, 853
DpnI	GATC	4 cut(s)	159, 182, 630, 780
DpnII	GATC	4 cut(s)	157, 180, 628, 778
EaeI	YGGCCR	1 cut(s)	663
Ecl136II	GAGCTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	508
EcoICRI	GAGCTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	234, 343, 587
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	3 cut(s)	200, 533, 675
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	3 cut(s)	196, 529, 671
FbaI	TGATCA	2 cut(s)	180, 778
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	4 cut(s)	171, 402, 676, 934
FokI	GGATG	2 cut(s)	228, 455
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	4 cut(s)	171, 402, 676, 934
FspBI	CTAG	2 cut(s)	578, 807
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	3 cut(s)	361, 543, 679
GluI	GCNGC	4 cut(s)	171, 402, 676, 934
GsaI	CCCAGC	2 cut(s)	278, 408
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	3 cut(s)	362, 544, 680
Hin1II	CATG	3 cut(s)	200, 533, 675
Hin6I	GCGC	3 cut(s)	360, 542, 678
HinP1I	GCGC	3 cut(s)	360, 542, 678
HinfI	GANTC	4 cut(s)	239, 269, 641, 765
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	130, 886
Hpy166II	GTNNAC	2 cut(s)	736, 820
Hpy188I	TCNGA	6 cut(s)	108, 128, 180, 185, 505, 778
Hpy188III	TCNNGA	1 cut(s)	769
Hpy8I	GTNNAC	2 cut(s)	736, 820
HpyAV	CCTTC	5 cut(s)	259, 712, 751, 841, 896
HpyCH4III	ACNGT	3 cut(s)	136, 625, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 294, 398, 681
HpyF3I	CTNAG	5 cut(s)	12, 261, 504, 770, 853
Hsp92II	CATG	3 cut(s)	200, 533, 675
HspAI	GCGC	3 cut(s)	360, 542, 678
Ksp22I	TGATCA	2 cut(s)	180, 778
Kzo9I	GATC	4 cut(s)	157, 180, 628, 778
LmnI	GCTCC	2 cut(s)	599, 694
Lsp1109I	GCAGC	2 cut(s)	182, 687
LweI	GCATC	3 cut(s)	211, 304, 697
MaeI	CTAG	2 cut(s)	578, 807
MaeIII	GTNAC	2 cut(s)	136, 511
MalI	GATC	4 cut(s)	159, 182, 630, 780
MboI	GATC	4 cut(s)	157, 180, 628, 778
MboII	GAAGA	4 cut(s)	344, 447, 476, 841
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	4 cut(s)	510, 571, 596, 887
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	3 cut(s)	228, 280, 634
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	2 cut(s)	263, 774
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	205, 316, 492, 511, 607
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	665
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	236, 345, 589
Mva1269I	GAATGC	2 cut(s)	192, 502
MvaI	CCWGG	3 cut(s)	236, 345, 589
MvnI	CGCG	1 cut(s)	692
MwoI	GCNNNNNNNGC	4 cut(s)	152, 294, 398, 681
NdeII	GATC	4 cut(s)	157, 180, 628, 778
NlaIII	CATG	3 cut(s)	200, 533, 675
NlaIV	GGNNCC	2 cut(s)	411, 630
NmuCI	GTSAC	2 cut(s)	136, 511
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	908
PctI	GAATGC	2 cut(s)	192, 502
PfeI	GAWTC	2 cut(s)	239, 641
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	172, 403, 677, 935
PleI	GAGTC	2 cut(s)	263, 773
PpsI	GAGTC	2 cut(s)	263, 773
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	3 cut(s)	234, 343, 587
PspFI	CCCAGC	2 cut(s)	274, 404
PspGI	CCWGG	3 cut(s)	234, 343, 587
PspN4I	GGNNCC	2 cut(s)	411, 630
PspPI	GGNCC	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	510
SatI	GCNGC	4 cut(s)	171, 402, 676, 934
Sau3AI	GATC	4 cut(s)	157, 180, 628, 778
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	263, 774
ScrFI	CCNGG	3 cut(s)	236, 345, 589
SduI	GDGCHC	4 cut(s)	510, 571, 596, 887
SetI	ASST	9 cut(s)	104, 178, 290, 455, 494, 510, 593, 844, 907
SfaNI	GCATC	3 cut(s)	211, 304, 697
SfuI	TTCGAA	1 cut(s)	908
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	3 cut(s)	228, 280, 634
SsiI	CCGC	3 cut(s)	401, 692, 934
SspMI	CTAG	2 cut(s)	578, 807
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	3 cut(s)	234, 343, 587
TaaI	ACNGT	3 cut(s)	136, 625, 824
TaqI	TCGA	3 cut(s)	64, 705, 908
TasI	AATT	3 cut(s)	228, 280, 634
TauI	GCSGC	2 cut(s)	404, 936
TfiI	GAWTC	2 cut(s)	239, 641
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	2 cut(s)	136, 511
TseI	GCWGC	2 cut(s)	170, 675
Tsp45I	GTSAC	2 cut(s)	136, 511
TspDTI	ATGAA	2 cut(s)	196, 315
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	2 cut(s)	280, 634
XceI	RCATGY	1 cut(s)	675
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	2 cut(s)	578, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.