Rroxscaffold_1G00045630

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014079
Physical Location & Seq
Reverse (-)
64797855 .. 64799914
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045630.1

Sequence Viewer

Length: 948 bp
ATGGTGATTGCTAAGCTTCTTGGCGTGCTTCTACTGTTGGAAATGATAAGTGGCCTCAGGTTTGGAGCAGAAGGTTTGAGTATGGGGTATTACATTATGAGTTGCCCATTTGCTGAACCAATTGTGAGGAATACAGTCACTAGAGCCTTGCAAGCTGATCCAACCTTAGCAGCAGGCCTACTCAGAATGCACTTCCATGACTGCTTCATAGAGGGATGTGATGGATCAGTCCTGCTTGATTCAACAAAGGATAACACAGCAGAGAAGGACTCCCCTGCAAATTTGAGCTTGCGCGGCTTCGAAGTTATAGATGATGCAAAGAAGCAGCTAGAGCAACAATGCCCAGGTGTAGTCTCCTGCGCTGATATACTTGCAATGGCTGCAAGACATGCCGTCTTTTGGGCTGGAGGTCCGGTATATGATATACCCAACGGTAGAAAGGATGGGAAAAGGTCAAAAATAGAAGATACGATCAATCTGCCTGCTCCCACCTTGAATGCTTCCGAACTCATTAAAATGTTTGGCCAACATGGATTTACCGCCCAAGAAATGGTGGCTCTGTCTGGTGCACATACACTAGGTGTAGCGAGGTGCTCATCATTCAAGAACAGATTGAGTGATTCTGTGGATCCAAATTTAGATTCAGGTTTTGCAAAGCAATTGACCAAAACATGTACCGCAGGCGATAATGCTGAGCAACCCTTCGACTCAACAAGAAACATTTTTGACAATGCTTACTATAATGGACTACAAAGGAAAACTGGAGTTCTTACTTCCGACCAAACTCTGTTTGCAAGTGCAAGTACCAGAGGCATTGTAAATGGTTATGCTTTCAACCAGGCCATGTTCTTCCTTGATTTTCAACAGGCAATGGTGAAGATGAGCATGCTTGATCCTAAGGAAGGTTCGAAAGGAGAAGTGCGAGGAAATTGCCGCAAGATCAATTAA

Protein Analysis

315

Amino Acids

34.2

Weight (kDa)

6.23

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 278 3.4e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33420 AT4G33420
fragaria_vesca FvH4_3g20670 FvH4_3g20670
malus_domestica MD03G1223300.v1.1 MD11G1241100.v1.1
prunus_persica Prupe.4G186300_v2.0.a1
pyrus_communis pycom03g17160 pycom11g21270
rosa_chinensis RchiOBHm_Chr5g0034661
rosa_laevigata RLG00000033570
rosa_multiflora Rmu_sc0002460.1_g000077
rosa_roxburghii Rroxscaffold_1G00045630
rosa_rugosa Rorug05G0147700
rosa_samantha Rh5AG240100 Rh5DG248800
rosa_wichuraiana Rw5G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccII CGCG 1 cut(s) 294
AciI CCGC 4 cut(s) 294, 540, 678, 934
AclWI GGATC 5 cut(s) 152, 232, 623, 636, 887
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 2 cut(s) 280, 634
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 2 cut(s) 676, 805
AfiI CCNNNNNNNGG 3 cut(s) 399, 550, 902
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 5 cut(s) 243, 496, 604, 835, 863
AhdI GACNNNNNGTC 1 cut(s) 392
AjnI CCWGG 2 cut(s) 343, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 625, 657
AluBI AGCT 4 cut(s) 16, 155, 288, 328
AluI AGCT 4 cut(s) 16, 155, 288, 328
Alw21I GWGCWC 2 cut(s) 571, 596
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 5 cut(s) 152, 232, 623, 636, 887
AoxI GGCC 4 cut(s) 52, 175, 523, 840
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 3 cut(s) 170, 325, 380
ApoI RAATTY 2 cut(s) 280, 634
AspLEI GCGC 2 cut(s) 294, 362
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 16, 886
AsuII TTCGAA 2 cut(s) 300, 908
AvaII GGWCC 1 cut(s) 410
AxyI CCTNAGG 2 cut(s) 56, 897
BaeGI GKGCMC 1 cut(s) 571
BalI TGGCCA 1 cut(s) 525
BamHI GGATCC 1 cut(s) 628
Bbv12I GWGCWC 2 cut(s) 571, 596
BbvI GCAGC 3 cut(s) 182, 337, 367
BccI CCATC 2 cut(s) 215, 437
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 4 cut(s) 460, 494, 912, 946
BciT130I CCWGG 2 cut(s) 345, 839
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 3 cut(s) 141, 329, 578
BisI GCNGC 5 cut(s) 171, 295, 326, 381, 934
BlpI GCTNAGC 2 cut(s) 12, 693
BlsI GCNGC 5 cut(s) 172, 296, 327, 382, 935
Bme1390I CCNGG 2 cut(s) 345, 839
Bme18I GGWCC 1 cut(s) 410
BmeRI GACNNNNNGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 2 cut(s) 345, 839
BmsI GCATC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 2 cut(s) 426, 783
Bpu10I CCTNAGC 1 cut(s) 166
Bpu1102I GCTNAGC 2 cut(s) 12, 693
Bpu14I TTCGAA 2 cut(s) 300, 908
BsaJI CCNNGG 1 cut(s) 343
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 550, 902
Bse1I ACTGG 1 cut(s) 766
Bse21I CCTNAGG 2 cut(s) 56, 897
Bse3DI GCAATG 2 cut(s) 381, 876
BseBI CCWGG 2 cut(s) 345, 839
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 2 cut(s) 221, 448
BseLI CCNNNNNNNGG 3 cut(s) 399, 550, 902
BseMI GCAATG 2 cut(s) 381, 876
BseMII CTCAG 3 cut(s) 70, 196, 684
BseNI ACTGG 1 cut(s) 766
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 3 cut(s) 182, 337, 367
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 54, 177, 525, 842
BsiHKAI GWGCWC 2 cut(s) 571, 596
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 3 cut(s) 399, 550, 902
BsmAI GTCTC 1 cut(s) 358
BsmI GAATGC 2 cut(s) 192, 502
BsnI GGCC 4 cut(s) 54, 177, 525, 842
Bsp119I TTCGAA 2 cut(s) 300, 908
Bsp1286I GDGCHC 2 cut(s) 571, 596
Bsp143I GATC 6 cut(s) 157, 224, 471, 628, 892, 939
Bsp1720I GCTNAGC 2 cut(s) 12, 693
BspACI CCGC 4 cut(s) 294, 540, 678, 934
BspANI GGCC 4 cut(s) 54, 177, 525, 842
BspCNI CTCAG 3 cut(s) 69, 195, 685
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 5 cut(s) 152, 232, 623, 636, 887
BspT104I TTCGAA 2 cut(s) 300, 908
BsrDI GCAATG 2 cut(s) 381, 876
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 6 cut(s) 157, 224, 471, 628, 892, 939
Bst2UI CCWGG 2 cut(s) 345, 839
Bst4CI ACNGT 3 cut(s) 36, 136, 434
BstAPI GCANNNNNTGC 2 cut(s) 380, 389
BstBI TTCGAA 2 cut(s) 300, 908
BstC8I GCNNGC 7 cut(s) 26, 153, 175, 290, 483, 682, 887
BstDEI CTNAG 6 cut(s) 12, 56, 166, 182, 693, 897
BstENI CCTNNNNNAGG 1 cut(s) 900
BstF5I GGATG 2 cut(s) 221, 448
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 2 cut(s) 294, 362
BstKTI GATC 6 cut(s) 160, 227, 474, 631, 895, 942
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 6 cut(s) 157, 224, 471, 628, 892, 939
BstMWI GCNNNNNNNGC 5 cut(s) 152, 294, 331, 380, 389
BstNI CCWGG 2 cut(s) 345, 839
BstNSI RCATGY 3 cut(s) 392, 675, 889
BstSCI CCNGG 2 cut(s) 343, 837
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 182, 337, 367
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu36I CCTNAGG 2 cut(s) 56, 897
BsuRI GGCC 4 cut(s) 54, 177, 525, 842
BtsCI GGATG 2 cut(s) 221, 448
Cac8I GCNNGC 7 cut(s) 26, 153, 175, 290, 483, 682, 887
CfoI GCGC 2 cut(s) 294, 362
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 675, 804
CviAII CATG 6 cut(s) 197, 389, 530, 672, 844, 886
CviQI GTAC 2 cut(s) 675, 804
DdeI CTNAG 6 cut(s) 12, 56, 166, 182, 693, 897
DpnI GATC 6 cut(s) 159, 226, 473, 630, 894, 941
DpnII GATC 6 cut(s) 157, 224, 471, 628, 892, 939
DraIII CACNNNGTG 1 cut(s) 581
DriI GACNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 523
Eam1105I GACNNNNNGTC 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 410
Eco81I CCTNAGG 2 cut(s) 56, 897
EcoNI CCTNNNNNAGG 1 cut(s) 900
EcoRII CCWGG 2 cut(s) 343, 837
FaeI CATG 6 cut(s) 200, 392, 533, 675, 847, 889
FatI CATG 6 cut(s) 196, 388, 529, 671, 843, 885
Fnu4HI GCNGC 5 cut(s) 171, 295, 326, 381, 934
FokI GGATG 2 cut(s) 228, 455
Fsp4HI GCNGC 5 cut(s) 171, 295, 326, 381, 934
FspBI CTAG 3 cut(s) 141, 329, 578
GlaI GCGC 2 cut(s) 293, 361
GluI GCNGC 5 cut(s) 171, 295, 326, 381, 934
GsuI CTGGAG 2 cut(s) 426, 783
HaeIII GGCC 4 cut(s) 54, 177, 525, 842
HapII CCGG 1 cut(s) 413
HhaI GCGC 2 cut(s) 294, 362
Hin1II CATG 6 cut(s) 200, 392, 533, 675, 847, 889
Hin6I GCGC 2 cut(s) 292, 360
HinP1I GCGC 2 cut(s) 292, 360
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 5 cut(s) 239, 269, 620, 641, 707
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 16, 886
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 3 cut(s) 185, 505, 778
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 65, 259, 712, 896
HpyCH4III ACNGT 3 cut(s) 36, 136, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 294, 331, 380, 389
HpyF3I CTNAG 6 cut(s) 12, 56, 166, 182, 693, 897
Hsp92II CATG 6 cut(s) 200, 392, 533, 675, 847, 889
HspAI GCGC 2 cut(s) 292, 360
Kzo9I GATC 6 cut(s) 157, 224, 471, 628, 892, 939
LmnI GCTCC 2 cut(s) 65, 490
Lsp1109I GCAGC 3 cut(s) 182, 337, 367
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 141, 329, 578
MaeIII GTNAC 1 cut(s) 136
MalI GATC 6 cut(s) 159, 226, 473, 630, 894, 941
MboI GATC 6 cut(s) 157, 224, 471, 628, 892, 939
MboII GAAGA 3 cut(s) 476, 841, 889
MfeI CAATTG 2 cut(s) 120, 659
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 571, 596
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 6 cut(s) 120, 280, 634, 659, 928, 943
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 2 cut(s) 263, 701
MmeI TCCRAC 3 cut(s) 18, 185, 801
MnlI CCTC 7 cut(s) 65, 120, 205, 401, 582, 803, 917
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 2 cut(s) 513, 946
MslI CAYNNNNRTG 2 cut(s) 195, 515
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 345, 839
MunI CAATTG 2 cut(s) 120, 659
Mva1269I GAATGC 2 cut(s) 192, 502
MvaI CCWGG 2 cut(s) 345, 839
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 5 cut(s) 152, 294, 331, 380, 389
NdeII GATC 6 cut(s) 157, 224, 471, 628, 892, 939
NlaIII CATG 6 cut(s) 200, 392, 533, 675, 847, 889
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 3 cut(s) 392, 675, 889
NspV TTCGAA 2 cut(s) 300, 908
PaeI GCATGC 1 cut(s) 889
PceI AGGCCT 1 cut(s) 177
PciI ACATGT 1 cut(s) 671
PctI GAATGC 2 cut(s) 192, 502
PfeI GAWTC 3 cut(s) 239, 620, 641
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 5 cut(s) 172, 296, 327, 382, 935
PleI GAGTC 2 cut(s) 263, 701
PpsI GAGTC 2 cut(s) 263, 701
PscI ACATGT 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 343, 837
PspGI CCWGG 2 cut(s) 343, 837
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 2 cut(s) 676, 805
RsaNI GTAC 2 cut(s) 675, 804
RseI CAYNNNNRTG 2 cut(s) 195, 515
SaqAI TTAA 2 cut(s) 513, 946
SatI GCNGC 5 cut(s) 171, 295, 326, 381, 934
Sau3AI GATC 6 cut(s) 157, 224, 471, 628, 892, 939
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 2 cut(s) 263, 701
ScrFI CCNGG 2 cut(s) 345, 839
SduI GDGCHC 2 cut(s) 571, 596
SfaNI GCATC 1 cut(s) 304
SfuI TTCGAA 2 cut(s) 300, 908
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 195, 515
SphI GCATGC 1 cut(s) 889
Sse9I AATT 6 cut(s) 120, 280, 634, 659, 928, 943
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 4 cut(s) 294, 540, 678, 934
SspMI CTAG 3 cut(s) 141, 329, 578
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 343, 837
TaaI ACNGT 3 cut(s) 36, 136, 434
TaqI TCGA 3 cut(s) 300, 705, 908
TasI AATT 6 cut(s) 120, 280, 634, 659, 928, 943
TauI GCSGC 2 cut(s) 297, 936
TfiI GAWTC 3 cut(s) 239, 620, 641
Tru1I TTAA 2 cut(s) 513, 946
Tru9I TTAA 2 cut(s) 513, 946
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 3 cut(s) 170, 325, 380
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 550
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 900
XapI RAATTY 2 cut(s) 280, 634
XceI RCATGY 3 cut(s) 392, 675, 889
XspI CTAG 3 cut(s) 141, 329, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.