FvH4_3g20670

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014079
Physical Location & Seq
Forward (+)
13720231 .. 13722886
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20670.t2

Sequence Viewer

Length: 963 bp
ATGAAGAGTTATCAAAATATGGTGATTCCTAAGCTTCTTGGCGTGCTTCTAGTGTTGGAGATGATCAGTGGCATCAGGTTTGGAGCAGATGGTTTGAGTATGGGGTATTACATAATGAGTTGCCCATTTGCTGAACAAATTGTGAGGAACACAGTCACCAGAGCCTTGCAAGCTGATCCAACCTTAGCAGCAGGCCTAATCAGAATGCATTTCCATGACTGCTTCATAGAGGGATGTGACGGATCAGTTCTGCTTGATTCAACAAAGGATAACACAGCAGAGAAAGACTCCCCTGCCAATTTGAGCTTGCGCGGCTTCGAAGTCATTGACGATGCAAAGAAGAAGCTTGAGCAACAATGCCCAGGCGTAGTCTCCTGCGCTGATATACTTGCAATGGCTGCAAAAGAGGCGGTCTTTTTGGCTGGAGGTCCGGTATATATGATACCCAACGGTAGAAAGGATGGGACAAGGTCAAGAATAGAAGATACGATGAATCTGCCTGCTCCCACCTTGAATGCTTCCGAACTCATTAAAATGTTTGGCCAACATGGATTTACTGCTCGAGAAATGGTGGCTCTGTCTGGTGCACATACGGTAGGTGTAGCCAGGTGCTCATCATTCAAGAACAGATTGAGTGATTCTGTGGATAATTTAGATTCAATTTTTGCAAAGCAACTGTCCAATACATGTAGCGCAGGTGATAATGCTGAGCAACCCTTCGACTCAACAAGAAACACTTTCGACAATGCGTACTATAATGGACTACAAAAGAAAACTGGAGTTCTTACTTCAGACCAAACCCTGTTTGCAAGTGCAAGTACCAGAGGAATTGTAAATGGTTATGCTTTCAACCAGGCCATGTTCTTCATTGATTTTCAACAGGCAATGGTGAAGATGAGCATGCTTGATCCTAAGGAAGGTTCGAAAGGAGAAGTACGAGGAAATTGCCGCAAGATCAATTAA

Protein Analysis

321

Amino Acids

34.8

Weight (kDa)

6.44

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 283 1.8e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33420 AT4G33420
fragaria_vesca FvH4_3g20670 FvH4_3g20670
malus_domestica MD03G1223300.v1.1 MD11G1241100.v1.1
prunus_persica Prupe.4G186300_v2.0.a1
pyrus_communis pycom03g17160 pycom11g21270
rosa_chinensis RchiOBHm_Chr5g0034661
rosa_laevigata RLG00000033570
rosa_multiflora Rmu_sc0002460.1_g000077
rosa_roxburghii Rroxscaffold_1G00045630
rosa_rugosa Rorug05G0147700
rosa_samantha Rh5AG240100 Rh5DG248800
rosa_wichuraiana Rw5G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 686
AccII CGCG 1 cut(s) 312
AciI CCGC 3 cut(s) 312, 410, 949
AclWI GGATC 3 cut(s) 170, 250, 902
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 3 cut(s) 752, 820, 936
AfiI CCNNNNNNNGG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 6 cut(s) 261, 514, 622, 660, 850, 878
AjnI CCWGG 3 cut(s) 361, 605, 852
AluBI AGCT 4 cut(s) 34, 173, 306, 346
AluI AGCT 4 cut(s) 34, 173, 306, 346
Alw21I GWGCWC 2 cut(s) 589, 614
Alw26I GTCTC 1 cut(s) 376
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 3 cut(s) 170, 250, 902
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 3 cut(s) 193, 541, 855
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 2 cut(s) 188, 398
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspLEI GCGC 3 cut(s) 312, 380, 695
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 4 cut(s) 34, 148, 710, 901
AsuII TTCGAA 2 cut(s) 318, 923
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 428
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 589, 614
BbvI GCAGC 2 cut(s) 200, 385
BccI CCATC 2 cut(s) 83, 455
BcgI CGANNNNNNTGC 4 cut(s) 478, 512, 927, 961
BciT130I CCWGG 3 cut(s) 363, 607, 854
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 686
BisI GCNGC 4 cut(s) 189, 313, 399, 949
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 4 cut(s) 190, 314, 400, 950
Bme1390I CCNGG 3 cut(s) 363, 607, 854
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 3 cut(s) 363, 607, 854
BmsI GCATC 2 cut(s) 81, 322
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 2 cut(s) 444, 798
Bpu10I CCTNAGC 2 cut(s) 30, 184
Bpu1102I GCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 2 cut(s) 318, 923
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse1I ACTGG 1 cut(s) 781
Bse21I CCTNAGG 1 cut(s) 912
Bse3DI GCAATG 2 cut(s) 399, 891
BseBI CCWGG 3 cut(s) 363, 607, 854
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 239, 466
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMI GCAATG 2 cut(s) 399, 891
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 1 cut(s) 781
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 2 cut(s) 200, 385
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 3 cut(s) 195, 543, 857
BsiHKAI GWGCWC 2 cut(s) 589, 614
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 917
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 478
BsmI GAATGC 2 cut(s) 210, 520
BsnI GGCC 3 cut(s) 195, 543, 857
BsoBI CYCGRG 1 cut(s) 561
Bsp119I TTCGAA 2 cut(s) 318, 923
Bsp1286I GDGCHC 2 cut(s) 589, 614
Bsp143I GATC 5 cut(s) 63, 175, 242, 907, 954
Bsp1720I GCTNAGC 1 cut(s) 708
BspACI CCGC 3 cut(s) 312, 410, 949
BspANI GGCC 3 cut(s) 195, 543, 857
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 3 cut(s) 170, 250, 902
BspT104I TTCGAA 2 cut(s) 318, 923
BsrDI GCAATG 2 cut(s) 399, 891
BsrI ACTGG 1 cut(s) 781
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 5 cut(s) 63, 175, 242, 907, 954
Bst2UI CCWGG 3 cut(s) 363, 607, 854
Bst4CI ACNGT 4 cut(s) 154, 452, 595, 678
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBI TTCGAA 2 cut(s) 318, 923
BstC8I GCNNGC 6 cut(s) 44, 171, 193, 308, 501, 902
BstDEI CTNAG 4 cut(s) 30, 184, 708, 912
BstENI CCTNNNNNAGG 1 cut(s) 915
BstF5I GGATG 2 cut(s) 239, 466
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 3 cut(s) 312, 380, 695
BstKTI GATC 5 cut(s) 66, 178, 245, 910, 957
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 5 cut(s) 63, 175, 242, 907, 954
BstMWI GCNNNNNNNGC 4 cut(s) 170, 312, 398, 407
BstNI CCWGG 3 cut(s) 363, 607, 854
BstNSI RCATGY 2 cut(s) 690, 904
BstSCI CCNGG 3 cut(s) 361, 605, 852
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 200, 385
Bsu36I CCTNAGG 1 cut(s) 912
BsuRI GGCC 3 cut(s) 195, 543, 857
BtsCI GGATG 2 cut(s) 239, 466
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 6 cut(s) 44, 171, 193, 308, 501, 902
CfoI GCGC 3 cut(s) 312, 380, 695
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 3 cut(s) 751, 819, 935
CviAII CATG 5 cut(s) 215, 548, 687, 859, 901
CviQI GTAC 3 cut(s) 751, 819, 935
DdeI CTNAG 4 cut(s) 30, 184, 708, 912
DpnI GATC 5 cut(s) 65, 177, 244, 909, 956
DpnII GATC 5 cut(s) 63, 175, 242, 907, 954
EaeI YGGCCR 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 915
EcoRII CCWGG 3 cut(s) 361, 605, 852
EcoT22I ATGCAT 1 cut(s) 210
FaeI CATG 5 cut(s) 218, 551, 690, 862, 904
FalI AAGNNNNNCTT 2 cut(s) 721, 753
FaqI GGGAC 1 cut(s) 478
FatI CATG 5 cut(s) 214, 547, 686, 858, 900
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 189, 313, 399, 949
FokI GGATG 2 cut(s) 246, 473
Fsp4HI GCNGC 4 cut(s) 189, 313, 399, 949
FspBI CTAG 1 cut(s) 50
GlaI GCGC 3 cut(s) 311, 379, 694
GluI GCNGC 4 cut(s) 189, 313, 399, 949
GsuI CTGGAG 2 cut(s) 444, 798
HaeIII GGCC 3 cut(s) 195, 543, 857
HapII CCGG 1 cut(s) 431
HhaI GCGC 3 cut(s) 312, 380, 695
Hin1II CATG 5 cut(s) 218, 551, 690, 862, 904
Hin6I GCGC 3 cut(s) 310, 378, 693
HinP1I GCGC 3 cut(s) 310, 378, 693
HindIII AAGCTT 2 cut(s) 32, 344
HinfI GANTC 7 cut(s) 25, 257, 287, 493, 638, 656, 722
HpaII CCGG 1 cut(s) 431
HphI GGTGA 4 cut(s) 34, 148, 710, 901
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 3 cut(s) 203, 523, 793
Hpy188III TCNNGA 3 cut(s) 474, 563, 622
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 2 cut(s) 727, 911
HpyCH4III ACNGT 4 cut(s) 154, 452, 595, 678
HpyCH4V TGCA 9 cut(s) 169, 208, 335, 392, 401, 587, 668, 809, 815
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 312, 398, 407
HpyF3I CTNAG 4 cut(s) 30, 184, 708, 912
Hsp92II CATG 5 cut(s) 218, 551, 690, 862, 904
HspAI GCGC 3 cut(s) 310, 378, 693
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 5 cut(s) 63, 175, 242, 907, 954
LmnI GCTCC 2 cut(s) 83, 508
Lsp1109I GCAGC 2 cut(s) 200, 385
LweI GCATC 2 cut(s) 81, 322
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 154, 236
MalI GATC 5 cut(s) 65, 177, 244, 909, 956
MboI GATC 5 cut(s) 63, 175, 242, 907, 954
MboII GAAGA 5 cut(s) 16, 352, 494, 856, 904
MhlI GDGCHC 2 cut(s) 589, 614
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 7 cut(s) 138, 298, 649, 660, 828, 943, 958
MluNI TGGCCA 1 cut(s) 543
MlyI GAGTC 2 cut(s) 281, 716
MmeI TCCRAC 2 cut(s) 36, 203
MnlI CCTC 6 cut(s) 138, 223, 400, 419, 818, 932
Mox20I TGGCCA 1 cut(s) 543
Mph1103I ATGCAT 1 cut(s) 210
MscI TGGCCA 1 cut(s) 543
MseI TTAA 2 cut(s) 531, 961
MslI CAYNNNNRTG 2 cut(s) 213, 533
Msp20I TGGCCA 1 cut(s) 543
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 363, 607, 854
Mva1269I GAATGC 2 cut(s) 210, 520
MvaI CCWGG 3 cut(s) 363, 607, 854
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 170, 312, 398, 407
NdeII GATC 5 cut(s) 63, 175, 242, 907, 954
NlaIII CATG 5 cut(s) 218, 551, 690, 862, 904
NmuCI GTSAC 2 cut(s) 154, 236
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 2 cut(s) 690, 904
NspV TTCGAA 2 cut(s) 318, 923
PaeI GCATGC 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 561
PaqCI CACCTGC 1 cut(s) 686
PceI AGGCCT 1 cut(s) 195
PciI ACATGT 1 cut(s) 686
PctI GAATGC 2 cut(s) 210, 520
PfeI GAWTC 5 cut(s) 25, 257, 493, 638, 656
PflFI GACNNNGTC 1 cut(s) 469
PkrI GCNGC 4 cut(s) 190, 314, 400, 950
PleI GAGTC 2 cut(s) 281, 716
PpsI GAGTC 2 cut(s) 281, 716
PscI ACATGT 1 cut(s) 686
Psp6I CCWGG 3 cut(s) 361, 605, 852
PspGI CCWGG 3 cut(s) 361, 605, 852
PspPI GGNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 469
RsaI GTAC 3 cut(s) 752, 820, 936
RsaNI GTAC 3 cut(s) 751, 819, 935
RseI CAYNNNNRTG 2 cut(s) 213, 533
SaqAI TTAA 2 cut(s) 531, 961
SatI GCNGC 4 cut(s) 189, 313, 399, 949
Sau3AI GATC 5 cut(s) 63, 175, 242, 907, 954
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 2 cut(s) 281, 716
ScrFI CCNGG 3 cut(s) 363, 607, 854
SduI GDGCHC 2 cut(s) 589, 614
SfaNI GCATC 2 cut(s) 81, 322
Sfr274I CTCGAG 1 cut(s) 561
SfuI TTCGAA 2 cut(s) 318, 923
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 561
SmiMI CAYNNNNRTG 2 cut(s) 213, 533
SmlI CTYRAG 2 cut(s) 347, 561
SmoI CTYRAG 2 cut(s) 347, 561
SphI GCATGC 1 cut(s) 904
Sse9I AATT 7 cut(s) 138, 298, 649, 660, 828, 943, 958
SseBI AGGCCT 1 cut(s) 195
SsiI CCGC 3 cut(s) 312, 410, 949
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 361, 605, 852
TaaI ACNGT 4 cut(s) 154, 452, 595, 678
TaqI TCGA 5 cut(s) 318, 562, 720, 741, 923
TasI AATT 7 cut(s) 138, 298, 649, 660, 828, 943, 958
TauI GCSGC 2 cut(s) 315, 951
TfiI GAWTC 5 cut(s) 25, 257, 493, 638, 656
Tru1I TTAA 2 cut(s) 531, 961
Tru9I TTAA 2 cut(s) 531, 961
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 154, 236
TseI GCWGC 2 cut(s) 188, 398
Tsp45I GTSAC 2 cut(s) 154, 236
TspDTI ATGAA 4 cut(s) 17, 214, 506, 856
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 469
VneI GTGCAC 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 428
XagI CCTNNNNNAGG 1 cut(s) 915
XceI RCATGY 2 cut(s) 690, 904
XhoI CTCGAG 1 cut(s) 561
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.