MD11G1241100.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014079
Physical Location & Seq
Reverse (-)
35095555 .. 35099206
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1241100.v1.1.491

Sequence Viewer

Length: 948 bp
ATGGTTATTGCTAAGCTGTTTGTAGTGTTTCTACTATTGCAAATGATGAGTGGCTTCGTATTTCGAGCAAAGGGTTTGAGTATGGGCTATTACATTATGAGCTGCCCGATGGCTGAACTTATTGTGAGAAATACAGTCACCAGGGCCTTGCAAGCTGATCCAACCTTAGCTGCAGGTCTAATCAGAATGCACTTCCATGACTGCTTCATAGAGGGATGTGATGCGTCAATTCTCCTGGATTCAACAAAAGATAACACAGCAGAGAAGGACTCTCCAGCAAATTTGAGCTTGCGTGGCTATGAAGTTATAGATGCTGCAAAAGCGGAACTTGAAAAAAAATGCCCTGGCGTGGTCTCTTGCGCCGACATAGTTGCAATGGCTTCTACATATGCAGTTTTTGCGGCTGGGGGCCCGGTTTATGACATACCCAAAGGAAGAAAGGATGGAAGGAGGTCTAAAATAGAAGACACAAGGAATCTGCCTCCACCCACTTTGAATGCCTCTGAGCTCATTACAATGTTTGGGCAACATGGATTTAGTGCTCAAGAAATGGTTGCTTTATCTGGTGCTCACACACTAGGTGTAGCCAGGTGCTCGTCGTTCAAAAACCGATTGAGTGATAATGTGGACCCAGATTTAGATTCAGGTTTTGCAAAGCAACTGACCAAAACATGCAGCGCAGGCGATAATGCCGAGCAACCCTTCGATGCAACGAGAAACAATTTTGATAATGTCTACTTCAACGGACTGCAAAGGAAGGCTGGAGTCCTGAGTTCTGATCAAACCCTATTTGCCAGTGCAAAAACTAGAAACATTGTAAATGGTTATGCCTTCAACCAAGCCATGTTCTTCTTAGATTTTCAACAGGCAATGGTGAAAATGAGCACCCTTGATGTCAAGGAAGGTTCCAAAGGAGAAATAAGAACAAATTGCCGCAAAATGAACTAA

Protein Analysis

316

Amino Acids

34.39

Weight (kDa)

8.06

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 278 4e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33420 AT4G33420
fragaria_vesca FvH4_3g20670 FvH4_3g20670
malus_domestica MD03G1223300.v1.1 MD11G1241100.v1.1
prunus_persica Prupe.4G186300_v2.0.a1
pyrus_communis pycom03g17160 pycom11g21270
rosa_chinensis RchiOBHm_Chr5g0034661
rosa_laevigata RLG00000033570
rosa_multiflora Rmu_sc0002460.1_g000077
rosa_roxburghii Rroxscaffold_1G00045630
rosa_rugosa Rorug05G0147700
rosa_samantha Rh5AG240100 Rh5DG248800
rosa_wichuraiana Rw5G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 735
AciI CCGC 3 cut(s) 323, 401, 934
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 280
AdeI CACNNNGTG 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 7 cut(s) 243, 332, 496, 604, 742, 835, 863
AjnI CCWGG 4 cut(s) 140, 234, 343, 587
AluBI AGCT 6 cut(s) 16, 102, 155, 170, 288, 508
AluI AGCT 6 cut(s) 16, 102, 155, 170, 288, 508
Alw21I GWGCWC 5 cut(s) 510, 544, 571, 596, 887
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 144, 409
ApaI GGGCCC 1 cut(s) 413
ApeKI GCWGC 4 cut(s) 102, 170, 314, 675
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 2 cut(s) 362, 680
AspS9I GGNCC 4 cut(s) 144, 409, 410, 628
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 130, 886
AvaII GGWCC 1 cut(s) 628
BaeGI GKGCMC 1 cut(s) 413
BanII GRGCYC 2 cut(s) 413, 510
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 5 cut(s) 510, 544, 571, 596, 887
BbvI GCAGC 4 cut(s) 89, 157, 301, 687
BccI CCATC 2 cut(s) 103, 437
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 4 cut(s) 142, 236, 345, 589
BclI TGATCA 1 cut(s) 778
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 578, 807
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 6 cut(s) 103, 171, 315, 402, 676, 934
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 6 cut(s) 104, 172, 316, 403, 677, 935
Bme1390I CCNGG 5 cut(s) 142, 236, 345, 413, 589
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 4 cut(s) 144, 409, 410, 628
BmiI GGNNCC 4 cut(s) 410, 411, 630, 907
BmrFI CCNGG 5 cut(s) 142, 236, 345, 413, 589
BmsI GCATC 3 cut(s) 211, 301, 697
BpiI GAAGAC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 2 cut(s) 258, 783
Bpu10I CCTNAGC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 141, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 795
Bse3DI GCAATG 2 cut(s) 381, 876
BseBI CCWGG 4 cut(s) 142, 236, 345, 589
BseDI CCNNGG 2 cut(s) 141, 343
BseGI GGATG 2 cut(s) 221, 448
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 2 cut(s) 381, 876
BseMII CTCAG 2 cut(s) 495, 761
BseNI ACTGG 1 cut(s) 795
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 4 cut(s) 89, 157, 301, 687
BseYI CCCAGC 1 cut(s) 404
BshFI GGCC 2 cut(s) 146, 411
BsiHKAI GWGCWC 5 cut(s) 510, 544, 571, 596, 887
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 358
BsmI GAATGC 2 cut(s) 192, 502
BsnI GGCC 2 cut(s) 146, 411
Bso31I GGTCTC 1 cut(s) 358
Bsp120I GGGCCC 1 cut(s) 409
Bsp1286I GDGCHC 6 cut(s) 413, 510, 544, 571, 596, 887
Bsp143I GATC 2 cut(s) 157, 778
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 3 cut(s) 323, 401, 934
BspANI GGCC 2 cut(s) 146, 411
BspCNI CTCAG 2 cut(s) 496, 762
BspLI GGNNCC 4 cut(s) 410, 411, 630, 907
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 2 cut(s) 381, 876
BsrI ACTGG 1 cut(s) 795
BssECI CCNNGG 2 cut(s) 141, 343
BssMI GATC 2 cut(s) 157, 778
Bst2UI CCWGG 4 cut(s) 142, 236, 345, 589
Bst4CI ACNGT 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 153, 290, 682
BstDEI CTNAG 5 cut(s) 12, 166, 504, 770, 853
BstF5I GGATG 2 cut(s) 221, 448
BstHHI GCGC 2 cut(s) 362, 680
BstKTI GATC 2 cut(s) 160, 781
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 157, 778
BstMWI GCNNNNNNNGC 5 cut(s) 152, 294, 320, 398, 681
BstNI CCWGG 4 cut(s) 142, 236, 345, 589
BstNSI RCATGY 1 cut(s) 675
BstSCI CCNGG 5 cut(s) 140, 234, 343, 411, 587
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 4 cut(s) 89, 157, 301, 687
BstV2I GAAGAC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 146, 411
BtsCI GGATG 2 cut(s) 221, 448
BtsIMutI CAGTG 1 cut(s) 802
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 153, 290, 682
CfoI GCGC 2 cut(s) 362, 680
Cfr13I GGNCC 4 cut(s) 144, 409, 410, 628
CseI GACGC 1 cut(s) 213
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 4 cut(s) 197, 530, 672, 844
DdeI CTNAG 5 cut(s) 12, 166, 504, 770, 853
DpnI GATC 2 cut(s) 159, 780
DpnII GATC 2 cut(s) 157, 778
DraIII CACNNNGTG 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 508
Eco24I GRGCYC 2 cut(s) 413, 510
Eco31I GGTCTC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 508
EcoO109I RGGNCCY 2 cut(s) 144, 409
EcoRII CCWGG 4 cut(s) 140, 234, 343, 587
EcoT38I GRGCYC 2 cut(s) 413, 510
FaeI CATG 4 cut(s) 200, 533, 675, 847
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 4 cut(s) 196, 529, 671, 843
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 6 cut(s) 103, 171, 315, 402, 676, 934
FokI GGATG 2 cut(s) 228, 455
FriOI GRGCYC 2 cut(s) 413, 510
Fsp4HI GCNGC 6 cut(s) 103, 171, 315, 402, 676, 934
FspBI CTAG 2 cut(s) 578, 807
GlaI GCGC 2 cut(s) 361, 679
GluI GCNGC 6 cut(s) 103, 171, 315, 402, 676, 934
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 2 cut(s) 258, 783
HaeIII GGCC 2 cut(s) 146, 411
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 213
HhaI GCGC 2 cut(s) 362, 680
Hin1II CATG 4 cut(s) 200, 533, 675, 847
Hin6I GCGC 2 cut(s) 360, 678
HinP1I GCGC 2 cut(s) 360, 678
HinfI GANTC 5 cut(s) 239, 269, 475, 641, 765
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 130, 886
Hpy166II GTNNAC 2 cut(s) 628, 736
Hpy188I TCNGA 3 cut(s) 185, 505, 778
Hpy188III TCNNGA 2 cut(s) 545, 769
Hpy8I GTNNAC 2 cut(s) 628, 736
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 6 cut(s) 259, 441, 712, 751, 841, 896
HpyCH4III ACNGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 294, 320, 398, 681
HpyF3I CTNAG 5 cut(s) 12, 166, 504, 770, 853
Hsp92II CATG 4 cut(s) 200, 533, 675, 847
HspAI GCGC 2 cut(s) 360, 678
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 2 cut(s) 157, 778
Lsp1109I GCAGC 4 cut(s) 89, 157, 301, 687
LweI GCATC 3 cut(s) 211, 301, 697
MaeI CTAG 2 cut(s) 578, 807
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 159, 780
MboI GATC 2 cut(s) 157, 778
MboII GAAGA 3 cut(s) 447, 476, 841
MhlI GDGCHC 6 cut(s) 413, 510, 544, 571, 596, 887
MluCI AATT 4 cut(s) 228, 280, 721, 928
MlyI GAGTC 2 cut(s) 263, 774
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 4 cut(s) 205, 444, 492, 511
MslI CAYNNNNRTG 2 cut(s) 195, 515
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 5 cut(s) 142, 236, 345, 413, 589
Mva1269I GAATGC 2 cut(s) 192, 502
MvaI CCWGG 4 cut(s) 142, 236, 345, 589
MwoI GCNNNNNNNGC 5 cut(s) 152, 294, 320, 398, 681
NciI CCSGG 1 cut(s) 413
NdeI CATATG 1 cut(s) 388
NdeII GATC 2 cut(s) 157, 778
NlaIII CATG 4 cut(s) 200, 533, 675, 847
NlaIV GGNNCC 4 cut(s) 410, 411, 630, 907
NmeAIII GCCGAG 1 cut(s) 718
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 675
PctI GAATGC 2 cut(s) 192, 502
PfeI GAWTC 3 cut(s) 239, 475, 641
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 6 cut(s) 104, 172, 316, 403, 677, 935
PleI GAGTC 2 cut(s) 263, 773
PpsI GAGTC 2 cut(s) 263, 773
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 4 cut(s) 140, 234, 343, 587
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 4 cut(s) 140, 234, 343, 587
PspN4I GGNNCC 4 cut(s) 410, 411, 630, 907
PspOMI GGGCCC 1 cut(s) 409
PspPI GGNCC 4 cut(s) 144, 409, 410, 628
PstI CTGCAG 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 195, 515
SacI GAGCTC 1 cut(s) 510
SatI GCNGC 6 cut(s) 103, 171, 315, 402, 676, 934
Sau3AI GATC 2 cut(s) 157, 778
Sau96I GGNCC 4 cut(s) 144, 409, 410, 628
SchI GAGTC 2 cut(s) 263, 774
ScrFI CCNGG 5 cut(s) 142, 236, 345, 413, 589
SduI GDGCHC 6 cut(s) 413, 510, 544, 571, 596, 887
SfaNI GCATC 3 cut(s) 211, 301, 697
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 195, 515
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 4 cut(s) 228, 280, 721, 928
SsiI CCGC 3 cut(s) 323, 401, 934
SspMI CTAG 2 cut(s) 578, 807
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 5 cut(s) 140, 234, 343, 411, 587
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 64, 705
TasI AATT 4 cut(s) 228, 280, 721, 928
TauI GCSGC 2 cut(s) 404, 936
TfiI GAWTC 3 cut(s) 239, 475, 641
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 102, 170, 314, 675
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 196, 315
TspGWI ACGGA 1 cut(s) 759
TspRI CASTG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 2 cut(s) 578, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.