Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005384

Physical Location & Seq

Genomic Coordinates Reverse (-)

16098070 .. 16100440

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAATGGTCACTGTTTATTTGCAGCATCTCCTCCTCGTCTCTTCCCTCTTCGCTCTATATCATCGAGTGTTTCTCCATCCGGTAGTTACAGAATCAAATTCTCCGATAATGTCGCCGTTGAGTGTCGGAATCTCTGTTTCTCCGTTAGTACAAGACAAGGTATATCTGTTCCTATTCTCCGTGATTGCTCCTTTCGGATTCCTTCTGGACAATTGTGGATGATTCTTGGTCCTAATGGCTGTGGCAAATCCACCCTTTTGAAGATTTTAGCTGGTGTAGTGAATCCATCCAGTGGCACTGTCTTTGTGGAGAAGCCGAAGAATTTTGTATTTCAGAATCCTGATCATCAGGTAGTGATGCCTACAGTGGAAGCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAGTCTAGGGTGATTAAAGCTTTGGAGGCTGTTGGTATGCGTGATTATATGCAGAGACCGATTCAAACTCTCAGTGGTGGTCAGAAACAAAGAATTGCCATTGCTGGTGCTTTAGCTGAAGCGTGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAGTCTGACCAGATGGGTGTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAGTATGCGGATGGAGCTGTGTATATGGAGAACGGTAGAGTGGTCAGACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAATCGTCTTACATTGATCAAATTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

271

Amino Acids

29.62

Weight (kDa)

8.69

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	60 - 193	3.4e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33460
fragaria_vesca	FvH4_5g28750 FvH4_5g28750 FvH4_5g28750 FvH4_5g28750
malus_domestica	MD10G1016500.v1.1
prunus_persica	Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1
pyrus_communis	pycom10g01080
rosa_chinensis	RchiOBHm_Chr7g0220961
rosa_laevigata	RLG00000002191
rosa_multiflora	Rmu_sc0002105.1_g000026
rosa_roxburghii	Rroxscaffold_3G00238850
rosa_rugosa	Rorug07G0198400 Rorug07G0198500 Rorug07G0198600
rosa_samantha	Rh7AG338800 Rh7BG329600 Rh7CG356900 Rh7DG337600
rosa_wichuraiana	Rw7G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	98, 322
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	262, 491
AluBI	AGCT	8 cut(s)	272, 374, 446, 542, 574, 620, 691, 710
AluI	AGCT	8 cut(s)	272, 374, 446, 542, 574, 620, 691, 710
Alw21I	GWGCWC	2 cut(s)	576, 693
Alw26I	GTCTC	2 cut(s)	44, 475
ApeKI	GCWGC	2 cut(s)	23, 752
ApoI	RAATTY	2 cut(s)	98, 322
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	448, 682, 758
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	576, 693
Bbv12I	GWGCWC	2 cut(s)	576, 693
BbvI	GCAGC	2 cut(s)	35, 764
BccI	CCATC	5 cut(s)	85, 295, 598, 698, 767
BceAI	ACGGC	2 cut(s)	101, 675
BclI	TGATCA	3 cut(s)	343, 612, 799
BcoDI	GTCTC	2 cut(s)	44, 475
BfaI	CTAG	2 cut(s)	432, 587
BfmI	CTRYAG	1 cut(s)	363
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	2 cut(s)	24, 753
BlsI	GCNGC	2 cut(s)	25, 754
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmsI	GCATC	3 cut(s)	35, 348, 739
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	525
BseGI	GGATG	5 cut(s)	77, 225, 287, 574, 709
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	511, 777
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	3 cut(s)	21, 24, 701
BseXI	GCAGC	2 cut(s)	35, 764
BsiHKAI	GWGCWC	2 cut(s)	576, 693
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	44, 475
BsmBI	CGTCTC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	576, 693
Bsp143I	GATC	4 cut(s)	343, 612, 628, 799
BspACI	CCGC	1 cut(s)	701
BspCNI	CTCAG	2 cut(s)	510, 776
BspHI	TCATGA	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	343, 612, 628, 799
Bst4CI	ACNGT	4 cut(s)	14, 301, 367, 728
Bst6I	CTCTTC	2 cut(s)	47, 54
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	497, 763
BstF5I	GGATG	5 cut(s)	77, 225, 287, 574, 709
BstKTI	GATC	4 cut(s)	346, 615, 631, 802
BstMAI	GTCTC	2 cut(s)	44, 475
BstMBI	GATC	4 cut(s)	343, 612, 628, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 452, 707
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	35, 764
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BtsCI	GGATG	5 cut(s)	77, 225, 287, 574, 709
BtsIMutI	CAGTG	5 cut(s)	10, 297, 298, 372, 505
Cac8I	GCNNGC	1 cut(s)	550
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	3 cut(s)	404, 409, 743
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	497, 763
DpnI	GATC	4 cut(s)	345, 614, 630, 801
DpnII	GATC	4 cut(s)	343, 612, 628, 799
Eam1104I	CTCTTC	2 cut(s)	47, 54
EarI	CTCTTC	2 cut(s)	47, 54
Ecl136II	GAGCTC	2 cut(s)	574, 691
Eco24I	GRGCYC	2 cut(s)	576, 693
Eco31I	GGTCTC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	230
Eco53kI	GAGCTC	2 cut(s)	574, 691
Eco57I	CTGAAG	1 cut(s)	564
EcoICRI	GAGCTC	2 cut(s)	574, 691
EcoT38I	GRGCYC	2 cut(s)	576, 693
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	407, 412, 746
FatI	CATG	3 cut(s)	403, 408, 742
FbaI	TGATCA	3 cut(s)	343, 612, 799
Fnu4HI	GCNGC	2 cut(s)	24, 753
FokI	GGATG	5 cut(s)	64, 232, 274, 581, 716
FriOI	GRGCYC	2 cut(s)	576, 693
Fsp4HI	GCNGC	2 cut(s)	24, 753
FspBI	CTAG	2 cut(s)	432, 587
GluI	GCNGC	2 cut(s)	24, 753
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	407, 412, 746
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	9 cut(s)	93, 130, 199, 223, 283, 337, 412, 487, 593
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	448, 682, 758
Hpy188I	TCNGA	9 cut(s)	106, 129, 198, 336, 510, 598, 633, 740, 766
Hpy188III	TCNNGA	4 cut(s)	207, 341, 404, 416
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	4 cut(s)	14, 301, 367, 728
HpyCH4V	TGCA	5 cut(s)	23, 478, 552, 641, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 452, 707
HpyF3I	CTNAG	2 cut(s)	497, 763
Hsp92II	CATG	3 cut(s)	407, 412, 746
Ksp22I	TGATCA	3 cut(s)	343, 612, 799
Kzo9I	GATC	4 cut(s)	343, 612, 628, 799
LmnI	GCTCC	3 cut(s)	194, 688, 707
LpnPI	CCDG	9 cut(s)	94, 192, 258, 304, 335, 354, 401, 516, 614
Lsp1109I	GCAGC	2 cut(s)	35, 764
LweI	GCATC	3 cut(s)	35, 348, 739
MaeI	CTAG	2 cut(s)	432, 587
MaeIII	GTNAC	4 cut(s)	8, 86, 655, 670
MalI	GATC	4 cut(s)	345, 614, 630, 801
MboI	GATC	4 cut(s)	343, 612, 628, 799
MboII	GAAGA	5 cut(s)	34, 41, 274, 331, 431
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	2 cut(s)	576, 693
MluCI	AATT	5 cut(s)	98, 212, 322, 519, 804
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	107, 546
MnlI	CCTC	5 cut(s)	42, 45, 57, 445, 679
MseI	TTAA	4 cut(s)	426, 441, 774, 814
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	380, 452, 707
NdeII	GATC	4 cut(s)	343, 612, 628, 799
NlaIII	CATG	3 cut(s)	407, 412, 746
NmuCI	GTSAC	3 cut(s)	8, 655, 670
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	8 cut(s)	93, 130, 199, 223, 283, 337, 412, 487
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	25, 754
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	2 cut(s)	576, 693
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	747
SacI	GAGCTC	2 cut(s)	576, 693
SaqAI	TTAA	4 cut(s)	426, 441, 774, 814
SatI	GCNGC	2 cut(s)	24, 753
Sau3AI	GATC	4 cut(s)	343, 612, 628, 799
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	576, 693
SfaNI	GCATC	3 cut(s)	35, 348, 739
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	5 cut(s)	98, 212, 322, 519, 804
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	2 cut(s)	432, 587
SstI	GAGCTC	2 cut(s)	576, 693
TaaI	ACNGT	4 cut(s)	14, 301, 367, 728
TaqI	TCGA	1 cut(s)	65
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	5 cut(s)	98, 212, 322, 519, 804
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	8 cut(s)	93, 130, 199, 223, 283, 337, 412, 487
Tru1I	TTAA	4 cut(s)	426, 441, 774, 814
Tru9I	TTAA	4 cut(s)	426, 441, 774, 814
TscAI	CASTG	5 cut(s)	17, 298, 304, 372, 505
TseFI	GTSAC	3 cut(s)	8, 655, 670
TseI	GCWGC	2 cut(s)	23, 752
Tsp45I	GTSAC	3 cut(s)	8, 655, 670
TspDTI	ATGAA	3 cut(s)	17, 425, 760
TspGWI	ACGGA	2 cut(s)	133, 170
TspRI	CASTG	5 cut(s)	17, 298, 304, 372, 505
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	98, 322
XspI	CTAG	2 cut(s)	432, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.