Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005384

Physical Location & Seq

Genomic Coordinates Forward (+)

26956946 .. 26962201

Gene Structure 5256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATGGAGAAGAAGTACCTTGTAGAGGCGGCGCAATCATCATCTCTCTCTCTCTATCTCTGCCTCTCTCTGCTTCGTTCCTCCTCCTCCTCCAATACTAGTGCAACTGCTTCTTCTCCTTTCGTCTCGGTGCAGCAATACCAAACTGGGCTTGAGTTCAGACTCAGCCATACTCATATGTGGCAACTAGAATGCCATAAGATGATCTATCCTTCAAAACTCATACATGCCTCAAAGCCTTTTGTCCCCCCTGTGTACTCTATTCCGCTCACCAGGACTAATGCTACAGAGGACATTTCCATAGAAGGTTGCAACTTGAGCTTGTCAGTTGCAACAAAGCAAGGTAAAACCATACCCATTCTTAAAGATTGCTCGCTTCGCATTCCATCAGGGCAGTTCTGGATGCTTCTTGGCCCCAATGGTTGTGGGAAATCTACCCTCCTAAAGATTTTGGCTGGTCTTTTGAATCCAACAAATGGAACTGTGTATGTGAAGAGGCCTAGGAGTTTCGTTTTTCAAAACCCAGACCATCAGGTAGTAATGCCTACAGTTGAAGCAGATGTGGCCTTTGGTCTTGGTAAGTTCAACTTGACACGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCAAATGCTGTTAGCATGTCGAAGTACCTGCAGAGGTCAGTTCAGACTCTTAGTGGTGGCCAGAAGCAAAGGGTTGCCATTGCCGGTGCTTTAGCTGAAGCATGCAAAGTTTTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAGTGATCAGGTTGGGGTGATCAAAGCTGTGAGGAATTCCTTGGATAGTTCTGGGGAAGTTACCGCATTATGGGTCACTCATCGCCTGGAAGAACTTGAGTATGCAGATGGTGCTGTTTATATGGAAAATGGGAGAGTTGTGATGCATGGCGATGCAGCAAGCATTATGGATTTTATTAAAACCAGGCAATCAGCATATATCAAGGAAATCAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

331

Amino Acids

36.2

Weight (kDa)

8.79

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	121 - 253	1.6e-28	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33460
fragaria_vesca	FvH4_5g28750 FvH4_5g28750 FvH4_5g28750 FvH4_5g28750
malus_domestica	MD10G1016500.v1.1
prunus_persica	Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1
pyrus_communis	pycom10g01080
rosa_chinensis	RchiOBHm_Chr7g0220961
rosa_laevigata	RLG00000002191
rosa_multiflora	Rmu_sc0002105.1_g000026
rosa_roxburghii	Rroxscaffold_3G00238850
rosa_rugosa	Rorug07G0198400 Rorug07G0198500 Rorug07G0198600
rosa_samantha	Rh7AG338800 Rh7BG329600 Rh7CG356900 Rh7DG337600
rosa_wichuraiana	Rw7G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	476
AccBSI	CCGCTC	1 cut(s)	268
AciI	CCGC	3 cut(s)	29, 266, 837
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	1 cut(s)	744
AcvI	CACGTG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	17, 257, 653
AfiI	CCNNNNNNNGG	3 cut(s)	25, 476, 843
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	216, 466, 518, 554, 586
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	3 cut(s)	272, 858, 956
AluBI	AGCT	5 cut(s)	321, 626, 722, 754, 800
AluI	AGCT	5 cut(s)	321, 626, 722, 754, 800
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	4 cut(s)	412, 497, 564, 685
ApeKI	GCWGC	3 cut(s)	133, 626, 929
ApoI	RAATTY	1 cut(s)	808
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AspA2I	CCTAGG	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	262, 802
AvrII	CCTAGG	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	596
BbvI	GCAGC	3 cut(s)	145, 613, 941
BccI	CCATC	3 cut(s)	394, 537, 875
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	3 cut(s)	274, 860, 958
BclI	TGATCA	2 cut(s)	778, 792
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	4 cut(s)	99, 188, 501, 612
BfmI	CTRYAG	3 cut(s)	285, 546, 656
BfuAI	ACCTGC	1 cut(s)	663
BisI	GCNGC	4 cut(s)	30, 134, 627, 930
BlnI	CCTAGG	1 cut(s)	500
BlsI	GCNGC	4 cut(s)	31, 135, 628, 931
Bme1390I	CCNGG	3 cut(s)	274, 860, 958
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	3 cut(s)	274, 860, 958
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	393, 906, 916
BmuI	ACTGGG	1 cut(s)	156
BpuEI	CTTGAG	3 cut(s)	173, 337, 890
BsaAI	YACGTR	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	500, 813
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 476, 843
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	274, 860, 958
BseDI	CCNNGG	2 cut(s)	500, 813
BseGI	GGATG	3 cut(s)	408, 754, 775
BseLI	CCNNNNNNNGG	3 cut(s)	25, 476, 843
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	3 cut(s)	73, 76, 79
BseXI	GCAGC	3 cut(s)	145, 613, 941
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	4 cut(s)	414, 499, 566, 687
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	25, 476, 843
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	197, 381
BsnI	GGCC	4 cut(s)	414, 499, 566, 687
Bsp143I	GATC	3 cut(s)	204, 778, 792
BspACI	CCGC	3 cut(s)	29, 266, 837
BspANI	GGCC	4 cut(s)	414, 499, 566, 687
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	663
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	705
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	2 cut(s)	500, 813
BssMI	GATC	3 cut(s)	204, 778, 792
BssT1I	CCWWGG	2 cut(s)	500, 813
Bst2UI	CCWGG	3 cut(s)	274, 860, 958
Bst4CI	ACNGT	2 cut(s)	484, 550
Bst6I	CTCTTC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	374, 730, 934
BstDEI	CTNAG	2 cut(s)	164, 677
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	408, 754, 775
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	3 cut(s)	207, 781, 795
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	204, 778, 792
BstMWI	GCNNNNNNNGC	5 cut(s)	318, 378, 563, 632, 884
BstNI	CCWGG	3 cut(s)	274, 860, 958
BstNSI	RCATGY	3 cut(s)	230, 646, 732
BstSCI	CCNGG	3 cut(s)	272, 858, 956
BstSFI	CTRYAG	3 cut(s)	285, 546, 656
BstV1I	GCAGC	3 cut(s)	145, 613, 941
BsuRI	GGCC	4 cut(s)	414, 499, 566, 687
BtgZI	GCGATG	2 cut(s)	839, 939
BtsCI	GGATG	3 cut(s)	408, 754, 775
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	3 cut(s)	374, 730, 934
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	16, 256, 652
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	4 cut(s)	227, 643, 729, 920
CviQI	GTAC	3 cut(s)	16, 256, 652
DdeI	CTNAG	2 cut(s)	164, 677
DpnI	GATC	3 cut(s)	206, 780, 794
DpnII	GATC	3 cut(s)	204, 778, 792
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	500, 813
Eco147I	AGGCCT	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	744
Eco72I	CACGTG	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	272, 858, 956
EcoT14I	CCWWGG	2 cut(s)	500, 813
EcoT22I	ATGCAT	1 cut(s)	921
ErhI	CCWWGG	2 cut(s)	500, 813
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	230, 646, 732, 923
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	226, 642, 728, 919
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	2 cut(s)	778, 792
Fnu4HI	GCNGC	4 cut(s)	30, 134, 627, 930
FokI	GGATG	3 cut(s)	415, 761, 782
Fsp4HI	GCNGC	4 cut(s)	30, 134, 627, 930
FspBI	CTAG	4 cut(s)	99, 188, 501, 612
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	30, 134, 627, 930
HaeIII	GGCC	4 cut(s)	414, 499, 566, 687
HapII	CCGG	1 cut(s)	711
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	230, 646, 732, 923
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	162, 466, 673
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	2 cut(s)	262, 802
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	161, 672
Hpy188III	TCNNGA	3 cut(s)	400, 612, 990
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	222, 299
HpyCH4III	ACNGT	2 cut(s)	484, 550
HpyCH4IV	ACGT	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	318, 378, 563, 632, 884
HpyF3I	CTNAG	2 cut(s)	164, 677
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	4 cut(s)	230, 646, 732, 923
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	2 cut(s)	778, 792
Kzo9I	GATC	3 cut(s)	204, 778, 792
Lsp1109I	GCAGC	3 cut(s)	145, 613, 941
LweI	GCATC	3 cut(s)	393, 906, 916
MaeI	CTAG	4 cut(s)	99, 188, 501, 612
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	2 cut(s)	832, 847
MalI	GATC	3 cut(s)	206, 780, 794
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	3 cut(s)	204, 778, 792
MboII	GAAGA	4 cut(s)	22, 105, 505, 875
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	2 cut(s)	808, 985
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	156, 667
MmeI	TCCRAC	1 cut(s)	494
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	2 cut(s)	363, 951
MslI	CAYNNNNRTG	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	3 cut(s)	274, 860, 958
Mva1269I	GAATGC	2 cut(s)	197, 381
MvaI	CCWGG	3 cut(s)	274, 860, 958
MwoI	GCNNNNNNNGC	5 cut(s)	318, 378, 563, 632, 884
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	3 cut(s)	204, 778, 792
NlaIII	CATG	4 cut(s)	230, 646, 732, 923
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	921
NspI	RCATGY	3 cut(s)	230, 646, 732
PaeI	GCATGC	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	499
PctI	GAATGC	2 cut(s)	197, 381
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	4 cut(s)	31, 135, 628, 931
PleI	GAGTC	2 cut(s)	156, 667
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
PpsI	GAGTC	2 cut(s)	156, 667
Ppu21I	YACGTR	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	272, 858, 956
PspCI	CACGTG	1 cut(s)	596
PspGI	CCWGG	3 cut(s)	272, 858, 956
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	660
RsaI	GTAC	3 cut(s)	17, 257, 653
RsaNI	GTAC	3 cut(s)	16, 256, 652
RseI	CAYNNNNRTG	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	363, 951
SatI	GCNGC	4 cut(s)	30, 134, 627, 930
Sau3AI	GATC	3 cut(s)	204, 778, 792
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	2 cut(s)	156, 667
ScrFI	CCNGG	3 cut(s)	274, 860, 958
SfaNI	GCATC	3 cut(s)	393, 906, 916
SfcI	CTRYAG	3 cut(s)	285, 546, 656
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	3 cut(s)	152, 316, 869
SmoI	CTYRAG	3 cut(s)	152, 316, 869
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	2 cut(s)	808, 985
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	3 cut(s)	29, 266, 837
SspMI	CTAG	4 cut(s)	99, 188, 501, 612
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	272, 858, 956
StyI	CCWWGG	2 cut(s)	500, 813
TaaI	ACNGT	2 cut(s)	484, 550
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	1 cut(s)	647
TasI	AATT	2 cut(s)	808, 985
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	363, 951
Tru9I	TTAA	2 cut(s)	363, 951
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	3 cut(s)	133, 626, 929
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	2 cut(s)	615, 786
Van91I	CCANNNNNTGG	1 cut(s)	476
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	3 cut(s)	230, 646, 732
XmaJI	CCTAGG	1 cut(s)	500
XspI	CTAG	4 cut(s)	99, 188, 501, 612
Zsp2I	ATGCAT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.