Rw7G028820

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005384
Physical Location & Seq
Reverse (-)
39626761 .. 39632066
5306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028820.1

Sequence Viewer

Length: 1059 bp
ATGATGGAGAAGAAGTACCTTGTAGAGGCGGCGCAATCAGTGCGTTTCTGGAGAAGAAGGGGATTGGTTCATCAAGAGAAGGAGAGATCCGGTGCGCTTCAAGATCTTAAAACAGTTGGACTCGGAGACGAGAGTAAATACGTGCTACTGCTACTGCTTCTTCGCCTTTGTCTCTCACTTTATAGATACGTCTCGGTGCAGCAATACCAAACTGGGCTTGAGTTCAGACTCAGCCATACTCATATGTGGCAACTAGAATGCCATAAGATGATCTATCCATCAAAACTCATACATGCCTCAAAGCCTTTTGTCCCCCCTGTGCACTCTATTCCTCTCACCAGGACTAATGTTACAGAGGAAATTTCCATAGAAGGTTGCAACTTGAGCTTCTCAGTTGCAACAAAGCAAGGTAAAACCATACCCATTCTTAAAGATTGCTCGCTTCGCATTCCGTCAGGGCAGTTCTGGATGCTTCTTGGCCCCAATGGTTGTGGGAAATCTACCCTCCTAAAGATTTTGGCTGGTCTTTTGAATCCAACAAATGGAACTGTGTACGTGAAGAGGCCTAGGAGTTTCGTTTTTCAAAACCCAGACCATCAGGTAGTAATGCCTACAGTTGAAGCAGATGTGGCATTTGGTCTTGGTAAGTTCAACTTGACACGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCAAATGCTGTTAGCATGTCAAAGTACCTGCAGAGGCCAGTTCAGACTCTTAGTGGTGGCCAGAAGCAAAGGGTTGCCATTGCCGGTGCTTTAGCTGAAGCATGCAAAGTTTTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAGCGATCAGGTTGGGGTGATCAAAGCTGTGAGGAATTCCTTGGATAGTTCTGGGGAAGTTACCGCATTATGGGTCACTCATCGCCTGGAAGAACTTGAGTATGCAGATGGTGCTGTTTATATGGAAAATGGGAGAGTTGTGATGCATGGCGATGCAGCAAGCATTATGGATTTTATTAAAACCAGGCAATCAGCATATATCAAGGAAATCAATTCTTGA

Protein Analysis

352

Amino Acids

39.36

Weight (kDa)

9.17

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 143 - 275 1.1e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 542
AciI CCGC 2 cut(s) 29, 903
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 360, 874
AcuI CTGAAG 1 cut(s) 810
AcvI CACGTG 1 cut(s) 662
AfaI GTAC 3 cut(s) 17, 554, 719
AfiI CCNNNNNNNGG 3 cut(s) 25, 542, 909
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 5 cut(s) 101, 532, 584, 620, 652
AjnI CCWGG 3 cut(s) 338, 924, 1022
AluBI AGCT 5 cut(s) 387, 692, 788, 820, 866
AluI AGCT 5 cut(s) 387, 692, 788, 820, 866
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 3 cut(s) 120, 176, 196
Alw44I GTGCAC 1 cut(s) 320
AlwI GGATC 1 cut(s) 81
AoxI GGCC 4 cut(s) 478, 563, 728, 751
ApaLI GTGCAC 1 cut(s) 320
ApeKI GCWGC 3 cut(s) 199, 692, 995
ApoI RAATTY 2 cut(s) 360, 874
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
AspA2I CCTAGG 1 cut(s) 566
AspLEI GCGC 2 cut(s) 34, 97
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 328, 868
AvrII CCTAGG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 324
BalI TGGCCA 1 cut(s) 753
BbrPI CACGTG 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 211, 679, 1007
BccI CCATC 3 cut(s) 286, 603, 941
BciT130I CCWGG 3 cut(s) 340, 926, 1024
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 3 cut(s) 120, 176, 196
BfaI CTAG 3 cut(s) 254, 567, 678
BfmI CTRYAG 2 cut(s) 612, 722
BfuAI ACCTGC 1 cut(s) 729
BglII AGATCT 1 cut(s) 103
BisI GCNGC 4 cut(s) 30, 200, 693, 996
BlnI CCTAGG 1 cut(s) 566
BlsI GCNGC 4 cut(s) 31, 201, 694, 997
Bme1390I CCNGG 3 cut(s) 340, 926, 1024
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 3 cut(s) 340, 926, 1024
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 459, 972, 982
BmuI ACTGGG 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 3 cut(s) 239, 403, 956
BsaAI YACGTR 3 cut(s) 142, 556, 662
BsaJI CCNNGG 2 cut(s) 566, 879
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 542, 909
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 2 cut(s) 217, 731
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 3 cut(s) 340, 926, 1024
BseDI CCNNGG 2 cut(s) 566, 879
BseGI GGATG 3 cut(s) 474, 820, 841
BseLI CCNNNNNNNGG 3 cut(s) 25, 542, 909
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 244, 405
BseNI ACTGG 2 cut(s) 217, 731
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 3 cut(s) 211, 679, 1007
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 4 cut(s) 480, 565, 730, 753
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 90, 777
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 25, 542, 909
BsmAI GTCTC 3 cut(s) 120, 176, 196
BsmBI CGTCTC 2 cut(s) 120, 196
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 2 cut(s) 263, 447
BsnI GGCC 4 cut(s) 480, 565, 730, 753
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 5 cut(s) 86, 103, 270, 844, 858
BspACI CCGC 2 cut(s) 29, 903
BspANI GGCC 4 cut(s) 480, 565, 730, 753
BspCNI CTCAG 2 cut(s) 243, 404
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 726
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 2 cut(s) 217, 731
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 2 cut(s) 566, 879
BssMI GATC 5 cut(s) 86, 103, 270, 844, 858
BssT1I CCWWGG 2 cut(s) 566, 879
Bst2UI CCWGG 3 cut(s) 340, 926, 1024
Bst4CI ACNGT 3 cut(s) 115, 550, 616
Bst6I CTCTTC 1 cut(s) 554
BstAPI GCANNNNNTGC 2 cut(s) 40, 950
BstBAI YACGTR 3 cut(s) 142, 556, 662
BstC8I GCNNGC 3 cut(s) 440, 796, 1000
BstDEI CTNAG 3 cut(s) 230, 391, 743
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 3 cut(s) 474, 820, 841
BstHHI GCGC 2 cut(s) 34, 97
BstKTI GATC 5 cut(s) 89, 106, 273, 847, 861
BstMAI GTCTC 3 cut(s) 120, 176, 196
BstMBI GATC 5 cut(s) 86, 103, 270, 844, 858
BstMWI GCNNNNNNNGC 6 cut(s) 40, 384, 444, 629, 698, 950
BstNI CCWGG 3 cut(s) 340, 926, 1024
BstNSI RCATGY 3 cut(s) 296, 712, 798
BstSCI CCNGG 3 cut(s) 338, 924, 1022
BstSFI CTRYAG 2 cut(s) 612, 722
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 211, 679, 1007
BstX2I RGATCY 2 cut(s) 86, 103
BstYI RGATCY 2 cut(s) 86, 103
BsuRI GGCC 4 cut(s) 480, 565, 730, 753
BtgZI GCGATG 2 cut(s) 905, 1005
BtsCI GGATG 3 cut(s) 474, 820, 841
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 3 cut(s) 440, 796, 1000
CfoI GCGC 2 cut(s) 34, 97
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 16, 553, 718
CspCI CAANNNNNGTGG 2 cut(s) 472, 507
CviAII CATG 4 cut(s) 293, 709, 795, 986
CviQI GTAC 3 cut(s) 16, 553, 718
DdeI CTNAG 3 cut(s) 230, 391, 743
DpnI GATC 5 cut(s) 88, 105, 272, 846, 860
DpnII GATC 5 cut(s) 86, 103, 270, 844, 858
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 566, 879
Eco147I AGGCCT 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 810
Eco72I CACGTG 1 cut(s) 662
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 3 cut(s) 338, 924, 1022
EcoT14I CCWWGG 2 cut(s) 566, 879
EcoT22I ATGCAT 1 cut(s) 987
ErhI CCWWGG 2 cut(s) 566, 879
Esp3I CGTCTC 2 cut(s) 120, 196
FaeI CATG 4 cut(s) 296, 712, 798, 989
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 292, 708, 794, 985
FauNDI CATATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 858
Fnu4HI GCNGC 4 cut(s) 30, 200, 693, 996
FokI GGATG 3 cut(s) 481, 827, 848
Fsp4HI GCNGC 4 cut(s) 30, 200, 693, 996
FspBI CTAG 3 cut(s) 254, 567, 678
GlaI GCGC 2 cut(s) 33, 96
GluI GCNGC 4 cut(s) 30, 200, 693, 996
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 4 cut(s) 480, 565, 730, 753
HapII CCGG 2 cut(s) 90, 777
HhaI GCGC 2 cut(s) 34, 97
Hin1II CATG 4 cut(s) 296, 712, 798, 989
Hin6I GCGC 2 cut(s) 32, 95
HinP1I GCGC 2 cut(s) 32, 95
HinfI GANTC 4 cut(s) 120, 228, 532, 739
HpaII CCGG 2 cut(s) 90, 777
HphI GGTGA 2 cut(s) 328, 868
Hpy166II GTNNAC 2 cut(s) 322, 553
Hpy188I TCNGA 3 cut(s) 125, 227, 738
Hpy188III TCNNGA 6 cut(s) 49, 74, 101, 466, 678, 1056
Hpy8I GTNNAC 2 cut(s) 322, 553
HpyAV CCTTC 3 cut(s) 51, 73, 365
HpyCH4III ACNGT 3 cut(s) 115, 550, 616
HpyCH4IV ACGT 4 cut(s) 141, 189, 555, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 384, 444, 629, 698, 950
HpyF3I CTNAG 3 cut(s) 230, 391, 743
HpySE526I ACGT 4 cut(s) 141, 189, 555, 661
Hsp92II CATG 4 cut(s) 296, 712, 798, 989
HspAI GCGC 2 cut(s) 32, 95
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 5 cut(s) 86, 103, 270, 844, 858
Lsp1109I GCAGC 3 cut(s) 211, 679, 1007
LweI GCATC 3 cut(s) 459, 972, 982
MaeI CTAG 3 cut(s) 254, 567, 678
MaeII ACGT 4 cut(s) 141, 189, 555, 661
MaeIII GTNAC 3 cut(s) 349, 898, 913
MalI GATC 5 cut(s) 88, 105, 272, 846, 860
MboI GATC 5 cut(s) 86, 103, 270, 844, 858
MboII GAAGA 5 cut(s) 22, 66, 152, 571, 941
MflI RGATCY 2 cut(s) 86, 103
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 3 cut(s) 360, 874, 1051
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 3 cut(s) 114, 222, 733
MmeI TCCRAC 2 cut(s) 97, 560
MnlI CCTC 8 cut(s) 19, 307, 342, 349, 515, 555, 720, 864
Mox20I TGGCCA 1 cut(s) 753
Mph1103I ATGCAT 1 cut(s) 987
MscI TGGCCA 1 cut(s) 753
MseI TTAA 3 cut(s) 108, 429, 1017
MslI CAYNNNNRTG 1 cut(s) 990
Msp20I TGGCCA 1 cut(s) 753
MspI CCGG 2 cut(s) 90, 777
MspR9I CCNGG 3 cut(s) 340, 926, 1024
Mva1269I GAATGC 2 cut(s) 263, 447
MvaI CCWGG 3 cut(s) 340, 926, 1024
MwoI GCNNNNNNNGC 6 cut(s) 40, 384, 444, 629, 698, 950
NdeI CATATG 1 cut(s) 243
NdeII GATC 5 cut(s) 86, 103, 270, 844, 858
NlaIII CATG 4 cut(s) 296, 712, 798, 989
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 913
NsiI ATGCAT 1 cut(s) 987
NspI RCATGY 3 cut(s) 296, 712, 798
PaeI GCATGC 1 cut(s) 798
PceI AGGCCT 1 cut(s) 565
PctI GAATGC 2 cut(s) 263, 447
PfeI GAWTC 1 cut(s) 532
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 4 cut(s) 31, 201, 694, 997
PleI GAGTC 3 cut(s) 114, 222, 733
PmaCI CACGTG 1 cut(s) 662
PmlI CACGTG 1 cut(s) 662
PpsI GAGTC 3 cut(s) 114, 222, 733
Ppu21I YACGTR 3 cut(s) 142, 556, 662
Psp6I CCWGG 3 cut(s) 338, 924, 1022
PspCI CACGTG 1 cut(s) 662
PspGI CCWGG 3 cut(s) 338, 924, 1022
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 726
PsuI RGATCY 2 cut(s) 86, 103
RsaI GTAC 3 cut(s) 17, 554, 719
RsaNI GTAC 3 cut(s) 16, 553, 718
RseI CAYNNNNRTG 1 cut(s) 990
SaqAI TTAA 3 cut(s) 108, 429, 1017
SatI GCNGC 4 cut(s) 30, 200, 693, 996
Sau3AI GATC 5 cut(s) 86, 103, 270, 844, 858
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 3 cut(s) 114, 222, 733
ScrFI CCNGG 3 cut(s) 340, 926, 1024
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 3 cut(s) 459, 972, 982
SfcI CTRYAG 2 cut(s) 612, 722
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 3 cut(s) 218, 382, 935
SmoI CTYRAG 3 cut(s) 218, 382, 935
SphI GCATGC 1 cut(s) 798
Sse9I AATT 3 cut(s) 360, 874, 1051
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 29, 903
SspMI CTAG 3 cut(s) 254, 567, 678
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 338, 924, 1022
StyI CCWWGG 2 cut(s) 566, 879
TaaI ACNGT 3 cut(s) 115, 550, 616
TaiI ACGT 4 cut(s) 144, 192, 558, 664
TasI AATT 3 cut(s) 360, 874, 1051
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 3 cut(s) 108, 429, 1017
Tru9I TTAA 3 cut(s) 108, 429, 1017
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 3 cut(s) 199, 692, 995
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 3 cut(s) 59, 681, 852
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 542
VneI GTGCAC 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 2 cut(s) 360, 874
XbaI TCTAGA 1 cut(s) 677
XceI RCATGY 3 cut(s) 296, 712, 798
XmaJI CCTAGG 1 cut(s) 566
XspI CTAG 3 cut(s) 254, 567, 678
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.