Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005384

Physical Location & Seq

Genomic Coordinates Reverse (-)

1844358 .. 1848864

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G020300.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGAATCCCTCAAATCTCATCCATCCCTCTAAGCCTTTTGTCTCTCCTCTATATTCCACTCCTCGTGTCAGGACCAATTTTACCGAGAACATTGCCATCGAAGGTCGCAACCTCAGCTTCTCGGTTGGGACGAGGCAAGGTAAAACCATACCCATTCTTAAAGATTGCTCTCTTCACATTCCTTCGGGGCAGTTTTGGATGCTTCTTGGACCCAATGGTTGCGGGAAATCTACCCTCTTGAAGATTTTGGCTGGTCTGTTGAATCCAACGGATGGAACTGTACATGTGAAGAGGCCTAGGAGTTTTGTTTTTCAAAATCCCGACCATCAGGTAGTGATGCCTACAGTAGAAGCAGATGTGGCATTTGGCCTTGGTAAGTTCAACCTAACCCCTGATGTAGTCAAATATAGAGTATCAAAAGCTTTGGATGCTGTCAGTATGTTGAACTACATGCAGAGGTCAGTTCAGACTCTCAGTGGTGGCCAGAAGCAAAGAGTTGCCATTGCTGGTGCTTTAGCTGAAGCATGTAAAGTTCTGTTGTTGGACGAGCTTACGACATTTTTGGATGAAAATGATCAGATTGGGGTGATCAGAGCAGTTAGGAATTCTGTGGATAGTTCTAGAGAAGTTACTGCATTATGGGTCACTCATCGTCTCGAGGAACTTGAGTATGCAGATGGTGCTGTCTATATGGAAGATGGGAGAGTTGTAATGCATGGCAATGCAACAGACATTATGAATTTCATTACAACCAGGCAATCAGCTTATATAAAAGAGATCAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

264

Amino Acids

29.13

Weight (kDa)

8.4

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33460
fragaria_vesca	FvH4_5g28750 FvH4_5g28750 FvH4_5g28750 FvH4_5g28750
malus_domestica	MD10G1016500.v1.1
prunus_persica	Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1
pyrus_communis	pycom10g01080
rosa_chinensis	RchiOBHm_Chr7g0220961
rosa_laevigata	RLG00000002191
rosa_multiflora	Rmu_sc0002105.1_g000026
rosa_roxburghii	Rroxscaffold_3G00238850
rosa_rugosa	Rorug07G0198400 Rorug07G0198500 Rorug07G0198600
rosa_samantha	Rh7AG338800 Rh7BG329600 Rh7CG356900 Rh7DG337600
rosa_wichuraiana	Rw7G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	607, 742
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	244, 265, 317, 385, 448
AjnI	CCWGG	1 cut(s)	755
AluBI	AGCT	5 cut(s)	120, 425, 521, 553, 767
AluI	AGCT	5 cut(s)	120, 425, 521, 553, 767
Alw26I	GTCTC	2 cut(s)	49, 662
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	3 cut(s)	296, 370, 484
ApoI	RAATTY	2 cut(s)	607, 742
AspA2I	CCTAGG	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	75, 212
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	75, 212
AvrII	CCTAGG	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	486
BauI	CACGAG	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	116
BccI	CCATC	6 cut(s)	33, 107, 269, 336, 674, 695
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	757
BclI	TGATCA	2 cut(s)	577, 591
BcoDI	GTCTC	2 cut(s)	49, 662
BfaI	CTAG	2 cut(s)	300, 624
BfmI	CTRYAG	1 cut(s)	345
BlnI	CCTAGG	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	2 cut(s)	75, 212
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	75, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	192, 330, 421
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	299, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	3 cut(s)	93, 504, 730
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	299, 373
BseGI	GGATG	6 cut(s)	21, 25, 207, 280, 436, 574
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	3 cut(s)	93, 504, 730
BseMII	CTCAG	2 cut(s)	130, 490
BseRI	GAGGAG	2 cut(s)	39, 54
BshFI	GGCC	3 cut(s)	298, 372, 486
BsiHKCI	CYCGRG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	49, 662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	298, 372, 486
BsoBI	CYCGRG	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	577, 591, 780
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	298, 372, 486
BspCNI	CTCAG	2 cut(s)	129, 489
BspLI	GGNNCC	1 cut(s)	214
BsrDI	GCAATG	3 cut(s)	93, 504, 730
BsrGI	TGTACA	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	299, 373
BssMI	GATC	3 cut(s)	577, 591, 780
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	299, 373
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	283, 349
Bst6I	CTCTTC	2 cut(s)	180, 287
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	33, 116, 476
BstF5I	GGATG	6 cut(s)	21, 25, 207, 280, 436, 574
BstKTI	GATC	3 cut(s)	580, 594, 783
BstMAI	GTCTC	2 cut(s)	49, 662
BstMBI	GATC	3 cut(s)	577, 591, 780
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 362, 431, 683
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	3 cut(s)	290, 457, 531
BstSCI	CCNGG	1 cut(s)	755
BstSFI	CTRYAG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	298, 372, 486
BtsCI	GGATG	6 cut(s)	21, 25, 207, 280, 436, 574
BtsIMutI	CAGTG	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	75, 212
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	4 cut(s)	287, 454, 528, 719
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	33, 116, 476
DpnI	GATC	3 cut(s)	579, 593, 782
DpnII	GATC	3 cut(s)	577, 591, 780
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	180, 287
EarI	CTCTTC	2 cut(s)	180, 287
Eco130I	CCWWGG	2 cut(s)	299, 373
Eco147I	AGGCCT	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	75, 212
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	755
EcoT14I	CCWWGG	2 cut(s)	299, 373
EcoT22I	ATGCAT	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	299, 373
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	4 cut(s)	290, 457, 531, 722
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	286, 453, 527, 718
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	2 cut(s)	577, 591
FokI	GGATG	6 cut(s)	8, 12, 214, 287, 443, 581
FspBI	CTAG	2 cut(s)	300, 624
HaeIII	GGCC	3 cut(s)	298, 372, 486
Hin1II	CATG	4 cut(s)	290, 457, 531, 722
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	3 cut(s)	7, 265, 472
HphI	GGTGA	1 cut(s)	601
Hpy188I	TCNGA	3 cut(s)	471, 582, 596
Hpy188III	TCNNGA	5 cut(s)	73, 241, 323, 624, 659
HpyAV	CCTTC	2 cut(s)	98, 195
HpyCH4III	ACNGT	2 cut(s)	283, 349
HpyCH4V	TGCA	5 cut(s)	457, 638, 677, 718, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 362, 431, 683
HpyF3I	CTNAG	3 cut(s)	33, 116, 476
Hsp92II	CATG	4 cut(s)	290, 457, 531, 722
Ksp22I	TGATCA	2 cut(s)	577, 591
Kzo9I	GATC	3 cut(s)	577, 591, 780
LpnPI	CCDG	8 cut(s)	58, 240, 317, 408, 495, 500, 742, 769
LweI	GCATC	3 cut(s)	192, 330, 421
MaeI	CTAG	2 cut(s)	300, 624
MaeIII	GTNAC	2 cut(s)	631, 646
MalI	GATC	3 cut(s)	579, 593, 782
MboI	GATC	3 cut(s)	577, 591, 780
MboII	GAAGA	4 cut(s)	167, 256, 304, 710
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	79, 607, 742, 784
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	2 cut(s)	293, 525
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	4 cut(s)	117, 362, 431, 683
NdeII	GATC	3 cut(s)	577, 591, 780
NlaIII	CATG	4 cut(s)	290, 457, 531, 722
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	3 cut(s)	290, 457, 531
PaeR7I	CTCGAG	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	298
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	7, 265
PflMI	CCANNNNNTGG	1 cut(s)	275
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	75, 212
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	577, 591, 780
Sau96I	GGNCC	2 cut(s)	75, 212
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	192, 330, 421
SfcI	CTRYAG	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	2 cut(s)	75, 212
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	659, 668
SmoI	CTYRAG	2 cut(s)	659, 668
Sse9I	AATT	4 cut(s)	79, 607, 742, 784
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	300, 624
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	2 cut(s)	299, 373
TaaI	ACNGT	2 cut(s)	283, 349
TaqI	TCGA	2 cut(s)	102, 660
TasI	AATT	4 cut(s)	79, 607, 742, 784
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	7, 265
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	646
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	4 cut(s)	20, 585, 736, 755
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	75, 212
XapI	RAATTY	2 cut(s)	607, 742
XbaI	TCTAGA	1 cut(s)	623
XceI	RCATGY	3 cut(s)	290, 457, 531
XhoI	CTCGAG	1 cut(s)	659
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	2 cut(s)	300, 624
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.