Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005384

Physical Location & Seq

Genomic Coordinates Reverse (-)

1173466 .. 1176226

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGAATCCCTCAATGCTCATGCATCCCTCTAAGCCTTTTGTCTCTCCTCTGTATTCCACTCCTCGCACCAGGACCAATGTAACTGAGAGCATTGCTATTGAAGGTCGCAACCTGAGCTACTCGGTTGCGACGAGGCAAGGTAAAACATTACCAATTCTTAGAGATTGCTCTCTTCGCATACCTTCAGGGCAGTTTTGGATGCTTCTTGGACCCAACGGGTGCGGGAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGAATCCAACAATTGGAAGTGTGCATGTGAAGAGGCCTAGGAGTTTTGTTTTTCAAAATCCTGATCATCAGGTAGTGATGCCTACAGTTGAAGCAGATGTAGCATTTGGCCTTGGTAAGTTTAACCTGACCCCTGATGAAGTCAAATCTAGAGTGTCAAAGGCTTTGGATGCTGTCAGCATGTCGAAGTTCATGCAGAGGTCAGTTCAGACTCTCAGTGGTGGCCAGAAGCAAAGGGTTGCCATTGCTGGTGCTTTAGCGGAAGCATGTAAAGTTCTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAATGATCAGATTGGGGTGATCAAAGCAGTTAGGAACTGTTTGGATAATTCTGGAGATGTTACTGCTTTATGGGTCACCCATCGTCTCGAGGAACTTGAGTATGCTGATGGTGCTGTCTATATGGAAGATGGGAGAGTTAAAATGCATGGCAATGCAGCAGACATCATGGATTTCATTATGACCAGGCAATCAGCTTATATCAAGGAAATCAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

264

Amino Acids

28.95

Weight (kDa)

8.64

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33460
fragaria_vesca	FvH4_5g28750 FvH4_5g28750 FvH4_5g28750 FvH4_5g28750
malus_domestica	MD10G1016500.v1.1
prunus_persica	Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1
pyrus_communis	pycom10g01080
rosa_chinensis	RchiOBHm_Chr7g0220961
rosa_laevigata	RLG00000002191
rosa_multiflora	Rmu_sc0002105.1_g000026
rosa_roxburghii	Rroxscaffold_3G00238850
rosa_rugosa	Rorug07G0198400 Rorug07G0198500 Rorug07G0198600
rosa_samantha	Rh7AG338800 Rh7BG329600 Rh7CG356900 Rh7DG337600
rosa_wichuraiana	Rw7G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	2 cut(s)	225, 521
AcoI	YGGCCR	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	5 cut(s)	104, 244, 265, 317, 353
AjnI	CCWGG	2 cut(s)	71, 755
AluBI	AGCT	3 cut(s)	120, 553, 767
AluI	AGCT	3 cut(s)	120, 553, 767
Alw26I	GTCTC	3 cut(s)	49, 263, 662
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	3 cut(s)	296, 370, 484
ApeKI	GCWGC	1 cut(s)	728
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AspA2I	CCTAGG	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	75, 212
AsuHPI	GGTGA	2 cut(s)	601, 640
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	75, 212
AvrII	CCTAGG	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	3 cut(s)	660, 674, 695
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	2 cut(s)	73, 757
BclI	TGATCA	3 cut(s)	325, 577, 591
BcoDI	GTCTC	3 cut(s)	49, 263, 662
BfaI	CTAG	2 cut(s)	300, 411
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	729
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	73, 757
Bme18I	GGWCC	2 cut(s)	75, 212
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	75, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	73, 757
BmsI	GCATC	4 cut(s)	34, 192, 330, 421
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	299, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	3 cut(s)	93, 504, 730
BseBI	CCWGG	2 cut(s)	73, 757
BseDI	CCNNGG	2 cut(s)	299, 373
BseGI	GGATG	5 cut(s)	25, 207, 436, 553, 574
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	3 cut(s)	93, 504, 730
BseMII	CTCAG	3 cut(s)	78, 107, 490
BseRI	GAGGAG	2 cut(s)	39, 54
BseXI	GCAGC	1 cut(s)	740
BshFI	GGCC	3 cut(s)	298, 372, 486
BsiHKCI	CYCGRG	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	49, 263, 662
BsmBI	CGTCTC	1 cut(s)	662
BsnI	GGCC	3 cut(s)	298, 372, 486
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	325, 577, 591
BspACI	CCGC	2 cut(s)	225, 521
BspANI	GGCC	3 cut(s)	298, 372, 486
BspCNI	CTCAG	3 cut(s)	79, 108, 489
BspLI	GGNNCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	93, 504, 730
BssECI	CCNNGG	2 cut(s)	299, 373
BssMI	GATC	3 cut(s)	325, 577, 591
BssT1I	CCWWGG	2 cut(s)	299, 373
Bst2UI	CCWGG	2 cut(s)	73, 757
Bst4CI	ACNGT	2 cut(s)	349, 611
Bst6I	CTCTTC	2 cut(s)	180, 287
BstDEI	CTNAG	5 cut(s)	33, 87, 116, 161, 476
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	5 cut(s)	25, 207, 436, 553, 574
BstKTI	GATC	3 cut(s)	328, 580, 594
BstMAI	GTCTC	3 cut(s)	49, 263, 662
BstMBI	GATC	3 cut(s)	325, 577, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 177, 362, 431, 683
BstNI	CCWGG	2 cut(s)	73, 757
BstNSI	RCATGY	3 cut(s)	290, 445, 531
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	71, 755
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	298, 372, 486
BtsCI	GGATG	5 cut(s)	25, 207, 436, 553, 574
BtsIMutI	CAGTG	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	75, 212
CviAII	CATG	7 cut(s)	22, 287, 442, 454, 528, 719, 739
CviJI	RGCY	9 cut(s)	37, 120, 254, 298, 372, 425, 486, 553, 767
CviKI_1	RGCY	9 cut(s)	37, 120, 254, 298, 372, 425, 486, 553, 767
DdeI	CTNAG	5 cut(s)	33, 87, 116, 161, 476
DpnI	GATC	3 cut(s)	327, 579, 593
DpnII	GATC	3 cut(s)	325, 577, 591
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	180, 287
EarI	CTCTTC	2 cut(s)	180, 287
Eco130I	CCWWGG	2 cut(s)	299, 373
Eco147I	AGGCCT	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	75, 212
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	646
EcoO65I	GGTNACC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	71, 755
EcoT14I	CCWWGG	2 cut(s)	299, 373
EcoT22I	ATGCAT	2 cut(s)	27, 720
ErhI	CCWWGG	2 cut(s)	299, 373
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	7 cut(s)	25, 290, 445, 457, 531, 722, 742
FatI	CATG	7 cut(s)	21, 286, 441, 453, 527, 718, 738
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	3 cut(s)	325, 577, 591
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	5 cut(s)	12, 214, 443, 560, 581
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	300, 411
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	298, 372, 486
Hin1II	CATG	7 cut(s)	25, 290, 445, 457, 531, 722, 742
HinfI	GANTC	3 cut(s)	7, 265, 472
HphI	GGTGA	2 cut(s)	601, 640
Hpy188I	TCNGA	2 cut(s)	471, 582
Hpy188III	TCNNGA	7 cut(s)	241, 262, 323, 411, 624, 659, 789
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	98, 195
HpyCH4III	ACNGT	2 cut(s)	349, 611
HpyCH4V	TGCA	5 cut(s)	25, 286, 457, 718, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 177, 362, 431, 683
HpyF3I	CTNAG	5 cut(s)	33, 87, 116, 161, 476
Hsp92II	CATG	7 cut(s)	25, 290, 445, 457, 531, 722, 742
Ksp22I	TGATCA	3 cut(s)	325, 577, 591
Kzo9I	GATC	3 cut(s)	325, 577, 591
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	4 cut(s)	34, 192, 330, 421
MaeI	CTAG	2 cut(s)	300, 411
MaeIII	GTNAC	3 cut(s)	82, 631, 646
MalI	GATC	3 cut(s)	327, 579, 593
MboI	GATC	3 cut(s)	325, 577, 591
MboII	GAAGA	4 cut(s)	167, 256, 304, 710
MfeI	CAATTG	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	156, 273, 619, 784
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	22, 40, 60, 75, 129, 248, 288, 453, 655
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	2 cut(s)	27, 720
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	2 cut(s)	384, 711
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	486
MspR9I	CCNGG	2 cut(s)	73, 757
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	73, 757
MwoI	GCNNNNNNNGC	5 cut(s)	117, 177, 362, 431, 683
NdeII	GATC	3 cut(s)	325, 577, 591
NlaIII	CATG	7 cut(s)	25, 290, 445, 457, 531, 722, 742
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	2 cut(s)	27, 720
NspI	RCATGY	3 cut(s)	290, 445, 531
PaeR7I	CTCGAG	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	7, 265
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	71, 755
PspEI	GGTNACC	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	71, 755
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	75, 212
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	384, 711
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	325, 577, 591
Sau96I	GGNCC	2 cut(s)	75, 212
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	73, 757
SfaNI	GCATC	4 cut(s)	34, 192, 330, 421
SfcI	CTRYAG	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	2 cut(s)	75, 212
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	659, 668
SmoI	CTYRAG	2 cut(s)	659, 668
Sse9I	AATT	4 cut(s)	156, 273, 619, 784
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	225, 521
SspMI	CTAG	2 cut(s)	300, 411
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	71, 755
StyI	CCWWGG	2 cut(s)	299, 373
TaaI	ACNGT	2 cut(s)	349, 611
TaqI	TCGA	2 cut(s)	446, 660
TasI	AATT	4 cut(s)	156, 273, 619, 784
TfiI	GAWTC	2 cut(s)	7, 265
Tru1I	TTAA	2 cut(s)	384, 711
Tru9I	TTAA	2 cut(s)	384, 711
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	5 cut(s)	20, 414, 442, 585, 736
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	75, 212
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	3 cut(s)	290, 445, 531
XhoI	CTCGAG	1 cut(s)	659
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	2 cut(s)	300, 411
Zsp2I	ATGCAT	2 cut(s)	27, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.