Rh7AG338800

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005384
Physical Location & Seq
Reverse (-)
42650029 .. 42655251
5223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG338800.1

Sequence Viewer

Length: 834 bp
ATGATCGAGAAGAAATACCTTTGTAGTCAGAGGCGCAATCAGTGCGTTTCTGGAGAAGAAGGGGATAAGGAGAGATCCGGTGCGCTTCAAGATCTTAGAACAGTTAGACTCGGAGACGAGAGTAAATACGAGGAAATTTCCATAGAAGGTTGCAACTTGAGCTTCTCAGTTGCAACAAAGCAAGGTAAAACCATACCCATTCTTAAAGATTGCTCGCTTCGCATTCCGTCAGGGCAATTCTGGATGCTTCTTGGCCCCAATGGTTGTGGGAAATCTACCCTCCTAAAGATTTTGGCTGGTCTTTTGAATCCAACCAATGGAACTGTGTATGTGAAGAGGCCTAGGAGTTTTGTTTTTCAAAACCCAGACCATCAGGTAGTAATGCCTACAGTTGAAGCAGATGTGGCATTTGGTCTTGGTAAGTTCAACTTGACACGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCAAATGCTGTTAGCATGTCAAAGTACCTGCAGAGGTCAGTTCAGACTCTTAGTGGTGGCCAGAAGCAAAGGGTTGCCATTGCCGGTGCTTTAGCTGAAGCATGCAAAGTTTTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAGTGATCAGGTTGGGGTGATCAAAGCTGTGAGGAATTCCTTGGATAGTTCTGGGGAAGTTACCGCATTATGGGTCACTCATCGCCTGGAAGAACTTGAATATGCAGATGGTGCTGTTTATATGGAAAATGGGAGAGTTGTGATGCATGGCGATGCAGCAAGCATTATGGATTTTATTAAAACCAGGCAATCAGCATATATCAAGGAAATCAATTCTTGA

Protein Analysis

277

Amino Acids

30.46

Weight (kDa)

8.14

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 68 - 200 1e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 317
AciI CCGC 1 cut(s) 678
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 2 cut(s) 135, 649
AcuI CTGAAG 1 cut(s) 585
AcvI CACGTG 1 cut(s) 437
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 317, 684
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 6 cut(s) 89, 307, 359, 395, 427, 713
AjnI CCWGG 2 cut(s) 699, 797
AluBI AGCT 5 cut(s) 162, 467, 563, 595, 641
AluI AGCT 5 cut(s) 162, 467, 563, 595, 641
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 69
AoxI GGCC 3 cut(s) 253, 338, 526
ApeKI GCWGC 2 cut(s) 467, 770
ApoI RAATTY 2 cut(s) 135, 649
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 2 cut(s) 36, 85
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 643
AvrII CCTAGG 1 cut(s) 341
BalI TGGCCA 1 cut(s) 528
BbrPI CACGTG 1 cut(s) 437
BbvI GCAGC 2 cut(s) 454, 782
BccI CCATC 2 cut(s) 378, 716
BciT130I CCWGG 2 cut(s) 701, 799
BclI TGATCA 2 cut(s) 619, 633
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 342, 453
BfmI CTRYAG 2 cut(s) 387, 497
BfuAI ACCTGC 1 cut(s) 504
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 468, 771
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 2 cut(s) 469, 772
Bme1390I CCNGG 2 cut(s) 701, 799
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 701, 799
BmsI GCATC 3 cut(s) 234, 747, 757
BpmI CTGGAG 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 341, 654
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 684
Bse118I RCCGGY 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 2 cut(s) 701, 799
BseDI CCNNGG 2 cut(s) 341, 654
BseGI GGATG 3 cut(s) 249, 595, 616
BseLI CCNNNNNNNGG 2 cut(s) 317, 684
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 454, 782
BshFI GGCC 3 cut(s) 255, 340, 528
BsiSI CCGG 2 cut(s) 78, 552
BslI CCNNNNNNNGG 2 cut(s) 317, 684
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 255, 340, 528
Bsp143I GATC 5 cut(s) 3, 74, 91, 619, 633
BspACI CCGC 1 cut(s) 678
BspANI GGCC 3 cut(s) 255, 340, 528
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 504
BspPI GGATC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 2 cut(s) 341, 654
BssMI GATC 5 cut(s) 3, 74, 91, 619, 633
BssT1I CCWWGG 2 cut(s) 341, 654
Bst2UI CCWGG 2 cut(s) 701, 799
Bst4CI ACNGT 3 cut(s) 103, 325, 391
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 2 cut(s) 42, 725
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 215, 571, 775
BstDEI CTNAG 3 cut(s) 95, 166, 518
BstF5I GGATG 3 cut(s) 249, 595, 616
BstHHI GCGC 2 cut(s) 36, 85
BstKTI GATC 5 cut(s) 6, 77, 94, 622, 636
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 3, 74, 91, 619, 633
BstMWI GCNNNNNNNGC 6 cut(s) 42, 159, 219, 404, 473, 725
BstNI CCWGG 2 cut(s) 701, 799
BstNSI RCATGY 2 cut(s) 487, 573
BstSCI CCNGG 2 cut(s) 699, 797
BstSFI CTRYAG 2 cut(s) 387, 497
BstV1I GCAGC 2 cut(s) 454, 782
BstX2I RGATCY 2 cut(s) 74, 91
BstYI RGATCY 2 cut(s) 74, 91
BsuRI GGCC 3 cut(s) 255, 340, 528
BtgZI GCGATG 2 cut(s) 680, 780
BtsCI GGATG 3 cut(s) 249, 595, 616
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 215, 571, 775
CfoI GCGC 2 cut(s) 36, 85
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 484, 570, 761
CviJI RGCY 9 cut(s) 162, 255, 296, 340, 467, 528, 563, 595, 641
CviKI_1 RGCY 9 cut(s) 162, 255, 296, 340, 467, 528, 563, 595, 641
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 95, 166, 518
DpnI GATC 5 cut(s) 5, 76, 93, 621, 635
DpnII GATC 5 cut(s) 3, 74, 91, 619, 633
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 341, 654
Eco147I AGGCCT 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 699, 797
EcoT14I CCWWGG 2 cut(s) 341, 654
EcoT22I ATGCAT 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 341, 654
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 3 cut(s) 487, 573, 764
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 3 cut(s) 483, 569, 760
FbaI TGATCA 2 cut(s) 619, 633
Fnu4HI GCNGC 2 cut(s) 468, 771
FokI GGATG 3 cut(s) 256, 602, 623
Fsp4HI GCNGC 2 cut(s) 468, 771
FspBI CTAG 2 cut(s) 342, 453
GlaI GCGC 2 cut(s) 35, 84
GluI GCNGC 2 cut(s) 468, 771
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 255, 340, 528
HapII CCGG 2 cut(s) 78, 552
HhaI GCGC 2 cut(s) 36, 85
Hin1II CATG 3 cut(s) 487, 573, 764
Hin6I GCGC 2 cut(s) 34, 83
HinP1I GCGC 2 cut(s) 34, 83
HinfI GANTC 3 cut(s) 108, 307, 514
HpaII CCGG 2 cut(s) 78, 552
HphI GGTGA 1 cut(s) 643
Hpy188I TCNGA 3 cut(s) 30, 113, 513
Hpy188III TCNNGA 6 cut(s) 7, 51, 89, 241, 453, 831
HpyAV CCTTC 2 cut(s) 53, 140
HpyCH4III ACNGT 3 cut(s) 103, 325, 391
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 8 cut(s) 153, 173, 470, 499, 573, 719, 760, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 159, 219, 404, 473, 725
HpyF3I CTNAG 3 cut(s) 95, 166, 518
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 3 cut(s) 487, 573, 764
HspAI GCGC 2 cut(s) 34, 83
Ksp22I TGATCA 2 cut(s) 619, 633
Kzo9I GATC 5 cut(s) 3, 74, 91, 619, 633
Lsp1109I GCAGC 2 cut(s) 454, 782
LweI GCATC 3 cut(s) 234, 747, 757
MaeI CTAG 2 cut(s) 342, 453
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 673, 688
MalI GATC 5 cut(s) 5, 76, 93, 621, 635
MboI GATC 5 cut(s) 3, 74, 91, 619, 633
MboII GAAGA 4 cut(s) 22, 68, 346, 716
MflI RGATCY 2 cut(s) 74, 91
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 4 cut(s) 135, 236, 649, 826
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 2 cut(s) 102, 508
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 6 cut(s) 24, 124, 290, 330, 495, 639
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 762
MscI TGGCCA 1 cut(s) 528
MseI TTAA 2 cut(s) 204, 792
MslI CAYNNNNRTG 1 cut(s) 765
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 2 cut(s) 78, 552
MspR9I CCNGG 2 cut(s) 701, 799
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 2 cut(s) 701, 799
MwoI GCNNNNNNNGC 6 cut(s) 42, 159, 219, 404, 473, 725
NdeII GATC 5 cut(s) 3, 74, 91, 619, 633
NlaIII CATG 3 cut(s) 487, 573, 764
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 2 cut(s) 487, 573
PaeI GCATGC 1 cut(s) 573
PceI AGGCCT 1 cut(s) 340
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 2 cut(s) 469, 772
PleI GAGTC 2 cut(s) 102, 508
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 2 cut(s) 102, 508
Ppu21I YACGTR 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 699, 797
PspCI CACGTG 1 cut(s) 437
PspGI CCWGG 2 cut(s) 699, 797
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 254
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 2 cut(s) 74, 91
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 2 cut(s) 204, 792
SatI GCNGC 2 cut(s) 468, 771
Sau3AI GATC 5 cut(s) 3, 74, 91, 619, 633
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 102, 508
ScrFI CCNGG 2 cut(s) 701, 799
SfaNI GCATC 3 cut(s) 234, 747, 757
SfcI CTRYAG 2 cut(s) 387, 497
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 573
Sse9I AATT 4 cut(s) 135, 236, 649, 826
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 678
SspMI CTAG 2 cut(s) 342, 453
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 699, 797
StyI CCWWGG 2 cut(s) 341, 654
TaaI ACNGT 3 cut(s) 103, 325, 391
TaiI ACGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 6
TasI AATT 4 cut(s) 135, 236, 649, 826
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 204, 792
Tru9I TTAA 2 cut(s) 204, 792
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 467, 770
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 2 cut(s) 456, 627
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 317
XapI RAATTY 2 cut(s) 135, 649
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 2 cut(s) 487, 573
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 2 cut(s) 342, 453
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.