FvH4_5g28750

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005384
Physical Location & Seq
Reverse (-)
19904272 .. 19908970
4699 bp
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UTR
Exon/CDS
Intron
FvH4_5g28750.t3

Sequence Viewer

Length: 816 bp
ATGTGGCAACTAGAATGCCATAAGCTGATGTATCCATCACAACTCATACATGCCTCTAAGACTTCTGTCCCCCCTGTGCACTCTATTCCTCTCACCAGGACTAATGTTTCTGAGGAAATTTCCATAGAAGGTTGCAACTTGAACTTCTCAGTCGCAACAAAGCAAGGTAAAACCATACCAATTCTTAAAGATTGCTCGCTTCGCATTCCTTCAGGGCAGTTTTGGATGCTTCTTGGCCCCAATGGTTGTGGGAAATCTACCCTCCTAAAGATTTTGGCTGGTCTTTTGAATCCAACAAACGGAACTGTGTATGTGAAGAGGCCTAGGAGTTTCGTTTTTCAAAACCCAGACCATCAGGTAGTAATGCCTACAGTTGAAGCAGATGTGGCATTTGGTCTTGGTAAGTTCAACTTGGCACGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCGAATGCTGTAGGCATGTCGAAATACTTGCAGAGGTCAGTTCAGACTCTTAGTGGAGGCCAGAAGCAAAGGGTTGCCATTGCCGGTGCTTTAGCTGAAGCATGCAAAGTCCTGTTGTTGGATGAGTTGACAACATTTTTGGATGAAAATGATCAGGTTGGGGTGATCAAAGCTGTGAGGAATTCCTTGGATAGTTCTGGGGAAGTTACAGCATTATGGGTCACTCATCGCCTGGAAGAACTTGAGTATGCAGATGGTGCCATTTATATGGAAAATGGGAGAGTAGCGATGCAGGGCGATGCAGCAAGCATTATGGATTTTATCAAAACCAGGCAATCAGCTTATTTTGTCGAAATCAATTCTTAA

Protein Analysis

272

Amino Acids

29.69

Weight (kDa)

8.23

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 62 - 161 7e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 707
AcsI RAATTY 2 cut(s) 117, 631
AcuI CTGAAG 2 cut(s) 195, 567
AcvI CACGTG 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 299, 568
AgsI TTSAA 5 cut(s) 142, 289, 341, 377, 409
AjnI CCWGG 3 cut(s) 95, 681, 779
AluBI AGCT 5 cut(s) 25, 449, 545, 623, 791
AluI AGCT 5 cut(s) 25, 449, 545, 623, 791
Alw21I GWGCWC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 77
AoxI GGCC 3 cut(s) 235, 320, 508
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 449, 752
ApoI RAATTY 2 cut(s) 117, 631
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AspA2I CCTAGG 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 85, 625
AvrII CCTAGG 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 707
BbrPI CACGTG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 436, 764
BccI CCATC 3 cut(s) 43, 360, 698
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 3 cut(s) 97, 683, 781
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 2 cut(s) 601, 615
BfaI CTAG 3 cut(s) 11, 324, 435
BfmI CTRYAG 2 cut(s) 369, 459
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 450, 753
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 2 cut(s) 451, 754
Bme1390I CCNGG 3 cut(s) 97, 683, 781
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 238, 709
BmrFI CCNGG 3 cut(s) 97, 683, 781
BmsI GCATC 3 cut(s) 216, 729, 739
BoxI GACNNNNGTC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 323, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 568
Bse118I RCCGGY 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 97, 683, 781
BseDI CCNNGG 2 cut(s) 323, 636
BseGI GGATG 3 cut(s) 231, 577, 598
BseLI CCNNNNNNNGG 2 cut(s) 299, 568
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 102, 162
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 2 cut(s) 436, 764
BshFI GGCC 3 cut(s) 237, 322, 510
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 299, 568
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 3 cut(s) 20, 204, 460
BsnI GGCC 3 cut(s) 237, 322, 510
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 601, 615
BspANI GGCC 3 cut(s) 237, 322, 510
BspCNI CTCAG 2 cut(s) 103, 161
BspLI GGNNCC 2 cut(s) 238, 709
BspT107I GGYRCC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 533
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 323, 636
BssMI GATC 2 cut(s) 601, 615
BssT1I CCWWGG 2 cut(s) 323, 636
Bst2UI CCWGG 3 cut(s) 97, 683, 781
Bst4CI ACNGT 2 cut(s) 307, 373
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 197, 553, 757
BstDEI CTNAG 4 cut(s) 57, 111, 148, 500
BstF5I GGATG 3 cut(s) 231, 577, 598
BstKTI GATC 2 cut(s) 604, 618
BstMBI GATC 2 cut(s) 601, 615
BstMWI GCNNNNNNNGC 4 cut(s) 201, 386, 455, 707
BstNI CCWGG 3 cut(s) 97, 683, 781
BstNSI RCATGY 3 cut(s) 53, 469, 555
BstPAI GACNNNNGTC 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 95, 681, 779
BstSFI CTRYAG 2 cut(s) 369, 459
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 436, 764
BstXI CCANNNNNNTGG 1 cut(s) 718
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 3 cut(s) 237, 322, 510
BtgZI GCGATG 3 cut(s) 662, 752, 762
BtsCI GGATG 3 cut(s) 231, 577, 598
Cac8I GCNNGC 3 cut(s) 197, 553, 757
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 3 cut(s) 50, 466, 552
CviJI RGCY 9 cut(s) 25, 237, 278, 322, 449, 510, 545, 623, 791
CviKI_1 RGCY 9 cut(s) 25, 237, 278, 322, 449, 510, 545, 623, 791
DdeI CTNAG 4 cut(s) 57, 111, 148, 500
DpnI GATC 2 cut(s) 603, 617
DpnII GATC 2 cut(s) 601, 615
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 323, 636
Eco147I AGGCCT 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 195, 567
Eco72I CACGTG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 95, 681, 779
EcoT14I CCWWGG 2 cut(s) 323, 636
ErhI CCWWGG 2 cut(s) 323, 636
FaeI CATG 3 cut(s) 53, 469, 555
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 49, 465, 551
FbaI TGATCA 2 cut(s) 601, 615
Fnu4HI GCNGC 2 cut(s) 450, 753
FokI GGATG 3 cut(s) 238, 584, 605
Fsp4HI GCNGC 2 cut(s) 450, 753
FspBI CTAG 3 cut(s) 11, 324, 435
GluI GCNGC 2 cut(s) 450, 753
HaeIII GGCC 3 cut(s) 237, 322, 510
HapII CCGG 1 cut(s) 534
Hin1II CATG 3 cut(s) 53, 469, 555
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 2 cut(s) 289, 496
HpaII CCGG 1 cut(s) 534
HphI GGTGA 2 cut(s) 85, 625
Hpy166II GTNNAC 2 cut(s) 79, 579
Hpy188I TCNGA 2 cut(s) 112, 495
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 2 cut(s) 79, 579
HpyAV CCTTC 2 cut(s) 122, 219
HpyCH4III ACNGT 2 cut(s) 307, 373
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 7 cut(s) 79, 135, 481, 555, 701, 742, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 386, 455, 707
HpyF3I CTNAG 4 cut(s) 57, 111, 148, 500
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 3 cut(s) 53, 469, 555
Ksp22I TGATCA 2 cut(s) 601, 615
Kzo9I GATC 2 cut(s) 601, 615
Lsp1109I GCAGC 2 cut(s) 436, 764
LweI GCATC 3 cut(s) 216, 729, 739
MaeI CTAG 3 cut(s) 11, 324, 435
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 655, 670
MalI GATC 2 cut(s) 603, 617
MboI GATC 2 cut(s) 601, 615
MboII GAAGA 2 cut(s) 328, 698
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 117, 180, 631, 808
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 317, 549
MnlI CCTC 8 cut(s) 64, 99, 106, 272, 312, 477, 500, 621
MseI TTAA 2 cut(s) 186, 814
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 3 cut(s) 97, 683, 781
Mva1269I GAATGC 3 cut(s) 20, 204, 460
MvaI CCWGG 3 cut(s) 97, 683, 781
MwoI GCNNNNNNNGC 4 cut(s) 201, 386, 455, 707
NdeII GATC 2 cut(s) 601, 615
NlaIII CATG 3 cut(s) 53, 469, 555
NlaIV GGNNCC 2 cut(s) 238, 709
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 3 cut(s) 53, 469, 555
PaeI GCATGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 3 cut(s) 20, 204, 460
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 451, 754
PleI GAGTC 1 cut(s) 490
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 419
PshAI GACNNNNGTC 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 95, 681, 779
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 3 cut(s) 95, 681, 779
PspN4I GGNNCC 2 cut(s) 238, 709
PspPI GGNCC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 716
SaqAI TTAA 2 cut(s) 186, 814
SatI GCNGC 2 cut(s) 450, 753
Sau3AI GATC 2 cut(s) 601, 615
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 97, 683, 781
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 3 cut(s) 216, 729, 739
SfcI CTRYAG 2 cut(s) 369, 459
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SphI GCATGC 1 cut(s) 555
Sse9I AATT 4 cut(s) 117, 180, 631, 808
SseBI AGGCCT 1 cut(s) 322
SspMI CTAG 3 cut(s) 11, 324, 435
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 95, 681, 779
StyI CCWWGG 2 cut(s) 323, 636
TaaI ACNGT 2 cut(s) 307, 373
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 470, 801
TasI AATT 4 cut(s) 117, 180, 631, 808
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 186, 814
Tru9I TTAA 2 cut(s) 186, 814
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 449, 752
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 2 cut(s) 438, 609
TspGWI ACGGA 1 cut(s) 315
VneI GTGCAC 1 cut(s) 77
XapI RAATTY 2 cut(s) 117, 631
XbaI TCTAGA 1 cut(s) 434
XceI RCATGY 3 cut(s) 53, 469, 555
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 3 cut(s) 11, 324, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.