Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015287

Physical Location & Seq

Genomic Coordinates Forward (+)

16267884 .. 16270925

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33945.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGGTGTCCGTACAATATCTCAGGAGGCATTCGACGATCTGGTTAGGGAAAATGTTGAAGATCTTGGTATGGATCCCTCCGAAGCTCTCGAAGACGCTCTCTACACTCTCAAGCTCCAAGGCGTCGATCTCTTTGGGATCATTACATGTGTTCCTGGAGAAAGTAGCGTTAAGGACAATCCGGTGATTGCTTGTTTAGATAGACTAAAAGAATTCGACAGTGTTTCAATAGACGGACCTCTTCGAGATGAGGTTTTCGATGAGATATCGAGTTTGTTCAAGAATCTCAATGAGCTTTGTAGCAGCCAAGAATCAGGGAACGCTGCAATTGCGACAAAACATGGTGCTGTGGATTTAACTTGCTCGATTTGTTCCAAAATCAAGATATCTACTAGAAGTAATCGTGTTCTTGTTCCTTGCTTTAAGGCTTTGGCTGTGTTGATCCGTGACATTCAGAGCACAGAGAGATTCAGGAATTGTACTGGACCAAATATCGTTGTTGATCTCTTAAATGATTCCAGCTCCGATTCTGATTTGTTAGATGCTGGTTTTGCGGTTGTTGCTGCTGCAGCAACTGGTAATGAAGTTGTGAAACAGTTATTCATGGAACTGAAAATCGATGAACTTATTCTGCAAGTGTTGAATAGAGAGAGTAAAACTACCATTAGAGCTCTGTACGATGCTATTTGTGCTCTTTTGACTCCAGATGACTTCCGTGTTGTTGCTTCCCAAGTTTATGGTTATGCACGAACTTTTGCCAAATTAGGGATTGCGACAGCCCTCACTGAAGCATTACAGGCAGGGATTGGCTCTGATAGTTTGGTGTCAGCAAGTACTGCGTTAAAAGCAATTGCTGTCAATGATGAAATATGTAAATCTATTGCTGAATCCGGTGGAATAGATACACTTCTTCGGTGTATTGATGATAGCGGTGAGCAAGGCAACAAAACTGCTGCTAAGACATGTTGTTCCCTGTTGTCTAAGTTGGCAGGAAGTGACTCTAACAAGAGTACCATAGTTGAGAAGCAAGGTCTGGACAAGCTAATCACACTCGCACTACGATTCTCTGATGATCCTCTAGTCATACAAGAGGTGATGTTGATAATCTCTATAATCTGTCTGAGATCACCAGACCACGCAGCCAAGGCTATAGAAGCTGGAGCTGGTGATCTAGCGGTCCAAGCAATGAAGAGGTTCCCAGTAGCTGCTCAAATGCAGAGAAACGCTTGCAACATGATACGGAACATTGCTGTCAGAAGTGCAGAGAACAGAACTATTCTGCTTGCTAATGGAATCGAGAAGCTGATAAGAACTGCTAAAGCCAACAATGAGACATGCAGAGCCGCTGCAACTGATGCACTGAGAGACCTTGGCCTTGATAACTACAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009987 GO:0030097 GO:0030154 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

464

Amino Acids

49.79

Weight (kDa)

4.82

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33945
fragaria_vesca	FvH4_2g06790
malus_domestica	MD10G1089700.v1.1
prunus_persica	Prupe.8G116700_v2.0.a1
pyrus_communis	pycom10g07310
rosa_chinensis	RchiOBHm_Chr6g0259011
rosa_laevigata	RLG00000014564
rosa_multiflora	Rmu_ssc0000050.1_g000116
rosa_roxburghii	Rroxscaffold_7G00206250 Rroxscaffold_7G00206420
rosa_rugosa	Rorug05G0584800
rosa_samantha	Rh6AG101200 Rh6BG093300 Rh6CG090700 Rh6DG084600
rosa_wichuraiana	Rw6G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	554, 930, 1175, 1344
AclWI	GGATC	5 cut(s)	68, 81, 146, 436, 1067
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	807
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	5 cut(s)	13, 481, 677, 835, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	765
AflIII	ACRYGT	2 cut(s)	146, 962
AgsI	TTSAA	4 cut(s)	59, 228, 280, 643
AjnI	CCWGG	1 cut(s)	154
Alw21I	GWGCWC	3 cut(s)	461, 673, 694
Alw26I	GTCTC	2 cut(s)	1325, 1359
AlwI	GGATC	5 cut(s)	68, 81, 146, 436, 1067
AlwNI	CAGNNNCTG	2 cut(s)	575, 1205
AoxI	GGCC	1 cut(s)	1372
ApeKI	GCWGC	9 cut(s)	303, 323, 563, 566, 569, 953, 1139, 1205, 1346
ApoI	RAATTY	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	627, 1193
AspS9I	GGNCC	3 cut(s)	236, 485, 1177
AsuHPI	GGTGA	5 cut(s)	196, 944, 1105, 1119, 1178
AvaII	GGWCC	3 cut(s)	236, 485, 1177
BaeI	ACNNNNGTAYC	2 cut(s)	994, 1027
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	3 cut(s)	461, 673, 694
BbvI	GCAGC	9 cut(s)	310, 315, 550, 553, 581, 940, 1151, 1192, 1333
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	1325, 1359
BfaI	CTAG	3 cut(s)	393, 1079, 1172
BfmI	CTRYAG	2 cut(s)	567, 1149
BglII	AGATCT	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	3 cut(s)	236, 485, 1177
BmgT120I	GGNCC	3 cut(s)	236, 485, 1177
BmiI	GGNNCC	2 cut(s)	75, 1196
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	1193
BmsI	GCATC	3 cut(s)	532, 670, 1345
BmuI	ACTGGG	1 cut(s)	1193
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	3 cut(s)	177, 687, 1179
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	1359
BsaJI	CCNNGG	3 cut(s)	118, 1143, 1369
BsaWI	WCCGGW	2 cut(s)	181, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse1I	ACTGG	3 cut(s)	487, 580, 1199
Bse3DI	GCAATG	2 cut(s)	1191, 1245
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	118, 1143, 1369
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	2 cut(s)	1191, 1245
BseMII	CTCAG	3 cut(s)	35, 1112, 1352
BseNI	ACTGG	3 cut(s)	487, 580, 1199
BseXI	GCAGC	9 cut(s)	310, 315, 550, 553, 581, 940, 1151, 1192, 1333
BsgI	GTGCAG	1 cut(s)	1281
BshFI	GGCC	1 cut(s)	1374
BshVI	ATCGAT	1 cut(s)	618
BsiHKAI	GWGCWC	3 cut(s)	461, 673, 694
BsiSI	CCGG	2 cut(s)	182, 891
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	2 cut(s)	1325, 1359
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	1374
Bso31I	GGTCTC	1 cut(s)	1359
Bsp1286I	GDGCHC	3 cut(s)	461, 673, 694
BspACI	CCGC	4 cut(s)	554, 930, 1175, 1344
BspANI	GGCC	1 cut(s)	1374
BspCNI	CTCAG	3 cut(s)	34, 1113, 1353
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	75, 1196
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	5 cut(s)	68, 81, 146, 436, 1067
BspTNI	GGTCTC	1 cut(s)	1359
BsrDI	GCAATG	2 cut(s)	1191, 1245
BsrI	ACTGG	3 cut(s)	487, 580, 1199
BssECI	CCNNGG	3 cut(s)	118, 1143, 1369
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	3 cut(s)	118, 1143, 1369
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	221, 597
Bst6I	CTCTTC	2 cut(s)	246, 1184
BstACI	GRCGYC	1 cut(s)	123
BstAPI	GCANNNNNTGC	2 cut(s)	836, 1355
BstC8I	GCNNGC	2 cut(s)	1228, 1284
BstDEI	CTNAG	5 cut(s)	21, 957, 981, 1121, 1361
BstMAI	GTCTC	2 cut(s)	1325, 1359
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	3 cut(s)	150, 966, 1338
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	2 cut(s)	567, 1149
BstV1I	GCAGC	9 cut(s)	310, 315, 550, 553, 581, 940, 1151, 1192, 1333
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	61, 73
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	2 cut(s)	61, 73
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	1374
BsuTUI	ATCGAT	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	226, 783, 1358
Cac8I	GCNNGC	2 cut(s)	1228, 1284
CaiI	CAGNNNCTG	2 cut(s)	575, 1205
Cfr13I	GGNCC	3 cut(s)	236, 485, 1177
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	2 cut(s)	104, 112
Csp6I	GTAC	5 cut(s)	12, 480, 676, 834, 1011
CviAII	CATG	6 cut(s)	147, 341, 604, 963, 1234, 1335
CviQI	GTAC	5 cut(s)	12, 480, 676, 834, 1011
DdeI	CTNAG	5 cut(s)	21, 957, 981, 1121, 1361
Eam1104I	CTCTTC	2 cut(s)	246, 1184
EarI	CTCTTC	2 cut(s)	246, 1184
Ecl136II	GAGCTC	1 cut(s)	671
Eco130I	CCWWGG	3 cut(s)	118, 1143, 1369
Eco24I	GRGCYC	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	1359
Eco32I	GATATC	2 cut(s)	267, 387
Eco47I	GGWCC	3 cut(s)	236, 485, 1177
Eco53kI	GAGCTC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	807
EcoICRI	GAGCTC	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	2 cut(s)	267, 387
EcoT14I	CCWWGG	3 cut(s)	118, 1143, 1369
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	3 cut(s)	118, 1143, 1369
FaeI	CATG	6 cut(s)	150, 344, 607, 966, 1237, 1338
FatI	CATG	6 cut(s)	146, 340, 603, 962, 1233, 1334
FriOI	GRGCYC	1 cut(s)	673
FspBI	CTAG	3 cut(s)	393, 1079, 1172
GsuI	CTGGAG	3 cut(s)	177, 687, 1179
HaeIII	GGCC	1 cut(s)	1374
HapII	CCGG	2 cut(s)	182, 891
HgaI	GACGC	2 cut(s)	104, 112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	150, 344, 607, 966, 1237, 1338
HpaII	CCGG	2 cut(s)	182, 891
HphI	GGTGA	5 cut(s)	196, 944, 1105, 1119, 1178
Hpy188I	TCNGA	8 cut(s)	82, 456, 526, 532, 814, 1069, 1122, 1256
Hpy188III	TCNNGA	9 cut(s)	23, 89, 245, 280, 382, 472, 704, 1034, 1297
Hpy99I	CGWCG	2 cut(s)	38, 128
HpyCH4III	ACNGT	2 cut(s)	221, 597
HpyF3I	CTNAG	5 cut(s)	21, 957, 981, 1121, 1361
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	150, 344, 607, 966, 1237, 1338
LmnI	GCTCC	3 cut(s)	120, 527, 1160
Lsp1109I	GCAGC	9 cut(s)	310, 315, 550, 553, 581, 940, 1151, 1192, 1333
LweI	GCATC	3 cut(s)	532, 670, 1345
MaeI	CTAG	3 cut(s)	393, 1079, 1172
MaeIII	GTNAC	2 cut(s)	446, 995
MboII	GAAGA	5 cut(s)	71, 104, 233, 902, 1201
MfeI	CAATTG	2 cut(s)	327, 849
MflI	RGATCY	2 cut(s)	61, 73
MhlI	GDGCHC	3 cut(s)	461, 673, 694
MluCI	AATT	5 cut(s)	212, 327, 475, 761, 849
MlyI	GAGTC	2 cut(s)	694, 992
MnlI	CCTC	8 cut(s)	19, 88, 244, 249, 791, 1084, 1086, 1185
MroXI	GAANNNNTTC	2 cut(s)	627, 1193
MseI	TTAA	5 cut(s)	171, 356, 423, 509, 842
MspA1I	CMGCKG	1 cut(s)	1346
MspI	CCGG	2 cut(s)	182, 891
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	2 cut(s)	327, 849
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	156
NlaIII	CATG	6 cut(s)	150, 344, 607, 966, 1237, 1338
NlaIV	GGNNCC	2 cut(s)	75, 1196
NmuCI	GTSAC	2 cut(s)	446, 995
NspI	RCATGY	3 cut(s)	150, 966, 1338
PciI	ACATGT	2 cut(s)	146, 962
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	2 cut(s)	627, 1193
PfeI	GAWTC	8 cut(s)	283, 311, 468, 515, 527, 887, 1062, 1293
PfoI	TCCNGGA	1 cut(s)	154
PleI	GAGTC	2 cut(s)	694, 992
PpsI	GAGTC	2 cut(s)	694, 992
PscI	ACATGT	2 cut(s)	146, 962
Psp124BI	GAGCTC	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	75, 1196
PspPI	GGNCC	3 cut(s)	236, 485, 1177
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	2 cut(s)	575, 1205
PsuI	RGATCY	2 cut(s)	61, 73
RsaI	GTAC	5 cut(s)	13, 481, 677, 835, 1012
RsaNI	GTAC	5 cut(s)	12, 480, 676, 834, 1011
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	5 cut(s)	171, 356, 423, 509, 842
Sau96I	GGNCC	3 cut(s)	236, 485, 1177
ScaI	AGTACT	1 cut(s)	835
SchI	GAGTC	2 cut(s)	694, 992
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	3 cut(s)	461, 673, 694
SfaNI	GCATC	3 cut(s)	532, 670, 1345
SfcI	CTRYAG	2 cut(s)	567, 1149
SinI	GGWCC	3 cut(s)	236, 485, 1177
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	212, 327, 475, 761, 849
SsiI	CCGC	4 cut(s)	554, 930, 1175, 1344
SspMI	CTAG	3 cut(s)	393, 1079, 1172
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	3 cut(s)	118, 1143, 1369
TaaI	ACNGT	2 cut(s)	221, 597
TasI	AATT	5 cut(s)	212, 327, 475, 761, 849
TatI	WGTACW	2 cut(s)	479, 833
TauI	GCSGC	1 cut(s)	1346
TfiI	GAWTC	8 cut(s)	283, 311, 468, 515, 527, 887, 1062, 1293
Tru1I	TTAA	5 cut(s)	171, 356, 423, 509, 842
Tru9I	TTAA	5 cut(s)	171, 356, 423, 509, 842
TscAI	CASTG	3 cut(s)	226, 790, 1365
TseFI	GTSAC	2 cut(s)	446, 995
TseI	GCWGC	9 cut(s)	303, 323, 563, 566, 569, 953, 1139, 1205, 1346
Tsp45I	GTSAC	2 cut(s)	446, 995
TspDTI	ATGAA	5 cut(s)	592, 597, 636, 879, 1202
TspGWI	ACGGA	4 cut(s)	249, 434, 704, 1255
TspRI	CASTG	3 cut(s)	226, 790, 1365
VpaK11BI	GGWCC	3 cut(s)	236, 485, 1177
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	3 cut(s)	150, 966, 1338
XmnI	GAANNNNTTC	2 cut(s)	627, 1193
XspI	CTAG	3 cut(s)	393, 1079, 1172
ZrmI	AGTACT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.