Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015287

Physical Location & Seq

Genomic Coordinates Forward (+)

5624181 .. 5629792

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGCCCACCGCCGAAGACCGCCGGCCGAACGATTTCGCAGCAGGCCTTCGACGAGGTCGTCAAGGAGAACATCGACGATCTCGGAATGGACCCCGCCGAGGCCCTCCAAGACGCCATCGAAACCCTAACTCTTCAGGCCGTCGATCTCTCTGGGATTGTCACTTGTGTGCCAGGAGAGGGTGGTGTGAACCCTGTGATTCAGTGTTTGGATAGACTGAAGGAGTTGAATTCTGTTGATAACAGTCAAAATGGTGACGAGATAGTTAAGTTACTTGATGAACTTACAGAGCTCTGTAACTCTGAAGGTTCTGGAAACTCTGCAATAGCCTCTAGAAACGGAGCGGTAGAATTGGTTTGTTTGATATGTTCTAAGCTTTCGACCGGGTGCCAGGGCGCTCTTGTTTCAGCTTTGAAGGCCATGGCTTTATTACTTGATGATTTGCAAAGTAGAGAGGCATTTAGAGCAAGTGGCGGACCAAAGCTTGTGGTGGGTATTATAACCGATGGATTTGAGAATATAGACTTATTGAGCAGTGGCTTTTCTGTCATTGCTGCTGCTGCAACGGGTAATGAGGTTATAAAAGAGTCTTTTATGGAGTTGAAGACTGATGAGCTTATTCTGCGAGTACTTAGTGTAAAAAGTGAAGGCAGCGTTGATAGTTTATATGATGCCATACGGATTCTTTTAACACCTGATGACACTCGTGTTTTGGCTTCCCAAGTTTATGGTTATGCACGGAAATTTGCCAAAATAGGAATTGCAGGAGCTCTGGTTGACTCCATACGTATGGGGCTAAGCTCACCTAGTCTTGTTTCAGGCAGCATTGCTTTGAAAGCTGTTGCTGTTAATGATGAAATATGTACAACCATTTCTGAAAATGGTGGTATTGATGCAGTTCTTGTTTGTATTGATGATAGTAGTGAACAAGGCAATAAAACTGTTGCTAAAGTTTGTTGTTCATTGCTTTCCAAGTTGGCAGGAAGTGACATCAATAAGAAAGCCATTGTTGAGAAGGGTGTGGATAGGCTGATCAAACTCTCTGGTAGATTTTCGGATGATCCTTCAGTCCTGCAAGAGTACTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009987 GO:0030097 GO:0030154 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

364

Amino Acids

38.13

Weight (kDa)

4.47

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33945
fragaria_vesca	FvH4_2g06790
malus_domestica	MD10G1089700.v1.1
prunus_persica	Prupe.8G116700_v2.0.a1
pyrus_communis	pycom10g07310
rosa_chinensis	RchiOBHm_Chr6g0259011
rosa_laevigata	RLG00000014564
rosa_multiflora	Rmu_ssc0000050.1_g000116
rosa_roxburghii	Rroxscaffold_7G00206250 Rroxscaffold_7G00206420
rosa_rugosa	Rorug05G0584800
rosa_samantha	Rh6AG101200 Rh6BG093300 Rh6CG090700 Rh6DG084600
rosa_wichuraiana	Rw6G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	500, 581
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	344
AciI	CCGC	5 cut(s)	11, 21, 96, 344, 474
AclWI	GGATC	1 cut(s)	1055
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	229, 743
AcuI	CTGAAG	4 cut(s)	119, 239, 324, 1050
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	630, 865, 1082
AfiI	CCNNNNNNNGG	2 cut(s)	100, 179
AgsI	TTSAA	4 cut(s)	229, 415, 604, 835
AjnI	CCWGG	2 cut(s)	172, 390
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	8 cut(s)	292, 376, 410, 484, 616, 770, 801, 839
AluI	AGCT	8 cut(s)	292, 376, 410, 484, 616, 770, 801, 839
Alw21I	GWGCWC	2 cut(s)	294, 772
AlwI	GGATC	1 cut(s)	1055
AoxI	GGCC	6 cut(s)	4, 25, 45, 102, 138, 417
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	6 cut(s)	40, 554, 557, 560, 651, 822
ApoI	RAATTY	2 cut(s)	229, 743
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	5 cut(s)	4, 5, 91, 103, 476
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	266, 795
AvaII	GGWCC	2 cut(s)	91, 476
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	3 cut(s)	8, 294, 772
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	23, 611
Bbv12I	GWGCWC	2 cut(s)	294, 772
BbvI	GCAGC	6 cut(s)	52, 541, 544, 547, 663, 834
BccI	CCATC	2 cut(s)	125, 500
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	174, 392
BclI	TGATCA	1 cut(s)	1032
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	2 cut(s)	333, 807
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	6 cut(s)	41, 555, 558, 561, 652, 823
BlpI	GCTNAGC	1 cut(s)	797
BlsI	GCNGC	6 cut(s)	42, 556, 559, 562, 653, 824
BmcAI	AGTACT	2 cut(s)	630, 1082
Bme1390I	CCNGG	3 cut(s)	174, 385, 392
Bme18I	GGWCC	2 cut(s)	91, 476
BmgT120I	GGNCC	5 cut(s)	4, 5, 91, 103, 476
BmiI	GGNNCC	3 cut(s)	6, 93, 389
BmrFI	CCNGG	3 cut(s)	174, 385, 392
BmsI	GCATC	2 cut(s)	661, 883
BpiI	GAAGAC	2 cut(s)	23, 611
Bpu1102I	GCTNAGC	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	788
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	99, 391, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 179
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	3 cut(s)	549, 825, 962
BseBI	CCWGG	2 cut(s)	174, 392
BseDI	CCNNGG	3 cut(s)	99, 391, 420
BseGI	GGATG	1 cut(s)	1063
BseLI	CCNNNNNNNGG	2 cut(s)	100, 179
BseMI	GCAATG	3 cut(s)	549, 825, 962
BseSI	GKGCMC	1 cut(s)	8
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	6 cut(s)	52, 541, 544, 547, 663, 834
Bsh1285I	CGRYCG	2 cut(s)	28, 384
BshFI	GGCC	6 cut(s)	6, 27, 47, 104, 140, 419
BshNI	GGYRCC	1 cut(s)	387
BsiEI	CGRYCG	2 cut(s)	28, 384
BsiHKAI	GWGCWC	2 cut(s)	294, 772
BsiSI	CCGG	2 cut(s)	24, 384
BslI	CCNNNNNNNGG	2 cut(s)	100, 179
BsnI	GGCC	6 cut(s)	6, 27, 47, 104, 140, 419
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 294, 772
Bsp1407I	TGTACA	1 cut(s)	863
Bsp143I	GATC	4 cut(s)	79, 145, 1032, 1060
Bsp1720I	GCTNAGC	1 cut(s)	797
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	5 cut(s)	11, 21, 96, 344, 474
BspANI	GGCC	6 cut(s)	6, 27, 47, 104, 140, 419
BspLI	GGNNCC	3 cut(s)	6, 93, 389
BspPI	GGATC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	344
BsrDI	GCAATG	3 cut(s)	549, 825, 962
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	863
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	99, 391, 420
BssMI	GATC	4 cut(s)	79, 145, 1032, 1060
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	174, 392
Bst4CI	ACNGT	2 cut(s)	245, 943
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	25, 45
BstDEI	CTNAG	3 cut(s)	372, 632, 797
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	1063
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	4 cut(s)	82, 148, 1035, 1063
BstMBI	GATC	4 cut(s)	79, 145, 1032, 1060
BstMCI	CGRYCG	2 cut(s)	28, 384
BstMWI	GCNNNNNNNGC	5 cut(s)	416, 464, 560, 622, 836
BstNI	CCWGG	2 cut(s)	174, 392
BstSCI	CCNGG	3 cut(s)	172, 383, 390
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	788
BstV1I	GCAGC	6 cut(s)	52, 541, 544, 547, 663, 834
BstV2I	GAAGAC	2 cut(s)	23, 611
BstXI	CCANNNNNNTGG	2 cut(s)	728, 790
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	6 cut(s)	6, 27, 47, 104, 140, 419
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	1063
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	209, 541
Cac8I	GCNNGC	2 cut(s)	25, 45
CfoI	GCGC	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	4, 5, 91, 103, 476
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	629, 864, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	3 cut(s)	629, 864, 1081
DdeI	CTNAG	3 cut(s)	372, 632, 797
DpnI	GATC	4 cut(s)	81, 147, 1034, 1062
DpnII	GATC	4 cut(s)	79, 145, 1032, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	489
Ecl136II	GAGCTC	2 cut(s)	292, 770
EclXI	CGGCCG	1 cut(s)	25
Eco105I	TACGTA	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	3 cut(s)	8, 294, 772
Eco47I	GGWCC	2 cut(s)	91, 476
Eco52I	CGGCCG	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	292, 770
Eco57I	CTGAAG	4 cut(s)	119, 239, 324, 1050
EcoICRI	GAGCTC	2 cut(s)	292, 770
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	172, 390
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	3 cut(s)	8, 294, 772
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	424
FatI	CATG	1 cut(s)	420
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	1032
Fnu4HI	GCNGC	6 cut(s)	41, 555, 558, 561, 652, 823
FokI	GGATG	1 cut(s)	1070
FriOI	GRGCYC	3 cut(s)	8, 294, 772
Fsp4HI	GCNGC	6 cut(s)	41, 555, 558, 561, 652, 823
FspBI	CTAG	2 cut(s)	333, 807
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	6 cut(s)	41, 555, 558, 561, 652, 823
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	6 cut(s)	6, 27, 47, 104, 140, 419
HapII	CCGG	2 cut(s)	24, 384
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	2 cut(s)	374, 482
HinfI	GANTC	4 cut(s)	199, 587, 682, 779
HpaII	CCGG	2 cut(s)	24, 384
HphI	GGTGA	2 cut(s)	266, 795
Hpy166II	GTNNAC	3 cut(s)	190, 778, 926
Hpy188I	TCNGA	4 cut(s)	86, 304, 877, 1057
Hpy188III	TCNNGA	2 cut(s)	312, 333
Hpy8I	GTNNAC	3 cut(s)	190, 778, 926
Hpy99I	CGWCG	3 cut(s)	56, 80, 146
HpyAV	CCTTC	7 cut(s)	58, 214, 299, 409, 641, 1009, 1074
HpyCH4III	ACNGT	2 cut(s)	245, 943
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	7 cut(s)	323, 445, 563, 737, 764, 896, 1075
HpyF10VI	GCNNNNNNNGC	5 cut(s)	416, 464, 560, 622, 836
HpyF3I	CTNAG	3 cut(s)	372, 632, 797
HpySE526I	ACGT	1 cut(s)	787
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	424
HspAI	GCGC	1 cut(s)	396
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	1032
Kzo9I	GATC	4 cut(s)	79, 145, 1032, 1060
LmnI	GCTCC	2 cut(s)	341, 767
Lsp1109I	GCAGC	6 cut(s)	52, 541, 544, 547, 663, 834
LweI	GCATC	2 cut(s)	661, 883
MaeI	CTAG	2 cut(s)	333, 807
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	5 cut(s)	160, 254, 270, 296, 986
MalI	GATC	4 cut(s)	81, 147, 1034, 1062
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	4 cut(s)	79, 145, 1032, 1060
MboII	GAAGA	3 cut(s)	28, 125, 616
MhlI	GDGCHC	3 cut(s)	8, 294, 772
MluCI	AATT	4 cut(s)	229, 350, 743, 759
MlyI	GAGTC	2 cut(s)	596, 773
MnlI	CCTC	7 cut(s)	49, 94, 116, 172, 340, 448, 568
MroNI	GCCGGC	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	4 cut(s)	267, 689, 849, 1090
MslI	CAYNNNNRTG	2 cut(s)	167, 788
MspI	CCGG	2 cut(s)	24, 384
MspR9I	CCNGG	3 cut(s)	174, 385, 392
MvaI	CCWGG	2 cut(s)	174, 392
MwoI	GCNNNNNNNGC	5 cut(s)	416, 464, 560, 622, 836
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	4 cut(s)	79, 145, 1032, 1060
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	3 cut(s)	6, 93, 389
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	160, 254, 986
OliI	CACNNNNGTG	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	199, 682
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	6 cut(s)	42, 556, 559, 562, 653, 824
PleI	GAGTC	2 cut(s)	595, 773
PpsI	GAGTC	2 cut(s)	595, 773
Ppu21I	YACGTR	1 cut(s)	788
PsiI	TTATAA	2 cut(s)	500, 581
Psp124BI	GAGCTC	2 cut(s)	294, 772
Psp6I	CCWGG	2 cut(s)	172, 390
PspGI	CCWGG	2 cut(s)	172, 390
PspN4I	GGNNCC	3 cut(s)	6, 93, 389
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	5 cut(s)	4, 5, 91, 103, 476
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	3 cut(s)	630, 865, 1082
RsaNI	GTAC	3 cut(s)	629, 864, 1081
RseI	CAYNNNNRTG	2 cut(s)	167, 788
SacI	GAGCTC	2 cut(s)	294, 772
SaqAI	TTAA	4 cut(s)	267, 689, 849, 1090
SatI	GCNGC	6 cut(s)	41, 555, 558, 561, 652, 823
Sau3AI	GATC	4 cut(s)	79, 145, 1032, 1060
Sau96I	GGNCC	5 cut(s)	4, 5, 91, 103, 476
ScaI	AGTACT	2 cut(s)	630, 1082
SchI	GAGTC	2 cut(s)	596, 773
ScrFI	CCNGG	3 cut(s)	174, 385, 392
SduI	GDGCHC	3 cut(s)	8, 294, 772
SfaNI	GCATC	2 cut(s)	661, 883
SinI	GGWCC	2 cut(s)	91, 476
SmiMI	CAYNNNNRTG	2 cut(s)	167, 788
SnaBI	TACGTA	1 cut(s)	788
Sse9I	AATT	4 cut(s)	229, 350, 743, 759
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	5 cut(s)	11, 21, 96, 344, 474
SspMI	CTAG	2 cut(s)	333, 807
SstI	GAGCTC	2 cut(s)	294, 772
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	172, 383, 390
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	245, 943
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	5 cut(s)	51, 75, 120, 144, 380
TasI	AATT	4 cut(s)	229, 350, 743, 759
TatI	WGTACW	3 cut(s)	628, 863, 1080
TfiI	GAWTC	2 cut(s)	199, 682
Tru1I	TTAA	4 cut(s)	267, 689, 849, 1090
Tru9I	TTAA	4 cut(s)	267, 689, 849, 1090
TscAI	CASTG	2 cut(s)	209, 541
TseFI	GTSAC	3 cut(s)	160, 254, 986
TseI	GCWGC	6 cut(s)	40, 554, 557, 560, 651, 822
Tsp45I	GTSAC	3 cut(s)	160, 254, 986
TspDTI	ATGAA	3 cut(s)	294, 870, 951
TspGWI	ACGGA	3 cut(s)	354, 694, 754
TspRI	CASTG	2 cut(s)	209, 541
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	91, 476
XapI	RAATTY	2 cut(s)	229, 743
XbaI	TCTAGA	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	333, 807
ZrmI	AGTACT	2 cut(s)	630, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.