Rh6CG090700

Armadillo repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015287
Physical Location & Seq
Forward (+)
9977218 .. 9983081
5864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG090700.1

Sequence Viewer

Length: 1029 bp
ATGGGCCCACCACCGAAGACCGGCGGCCGAACGATTTCGCAGGAGGCCTTCGACGAGGTCGTGAAGGAGAACATCGACGATCTCGGCATGGACCCCACCGAGGCCCTCCAGGACGCCATCGAAACCCTAACTCTTCAGGGCGTCGATCTCACTGGGATTGTAACCTGTGTGTCAGGAGAGGGTGGTGTGAAGGACAACCCTGTGATTCAGTGTCTGGATAGATTGAAGCAGTTGAATTCTGGCGAAAACAGTCAAGTAGGCGATGAGGAGATAGTTAAGTTACTTGATGAACTTACAGAGCTGTGTAATTCTGAAGGTTCTGGAAACTCTGCAATAGCCTCTAGAAACGGTGCGATTGAATTGATTTGTTCTCTATGTTCTAAGGTTTCGACTAGGTGCCAGGGTGCACTTGTTTCAGCTTTGAAGGCAATGGCTTCGTTACTTCATGATTTGCAAAGCAGAGAGGCATTTAGAGCAAGTGGTGGACCAAAGCTTGTGGTGGGCATTCTAACTGATGGATTTGAGAATATAGAAATATTGAGCAGTGGCTTTGCTGTCATTGCTGCTGCTGCAACGGGTAATGAGGTTACAAAAGAGTCTTTCATGGAGTTGAAGACTGATGAGCTTATTCTGCGAGCACTTAGTATAAAAAGTGAAGGCAGCATTGATAGTTTATATGATGCCATACGGATTCTCTTAACACCTGATGATACTCGTGTTTTGGCTTCCCAAGTTTATGGTTATGTGCGGAAATTTGCCAAAATTGGAATTCCAGGAGCTCTGGTTGACTCCATACGTGCGGGGCTAAGCTCACCTAGTCTTATTTCAGCAAGCATCGCTTTGAAAGCTGTTGCTGCCAATGATGAAATATGTACAACCATTTCTGAACATGGTGGTATTGATGCAGTTCTCATATGCATTGATGACAGTAGTGAACAAGGCAATAAAACTGTTGCTCAAGCTTGTTGTTCTTTGCTCTCCAGGGTAAAGTCATTTTATTCTTATACCGTTACAGATTCTTTCCTATAA

Protein Analysis

342

Amino Acids

36.0

Weight (kDa)

4.52

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33945
fragaria_vesca FvH4_2g06790
malus_domestica MD10G1089700.v1.1
prunus_persica Prupe.8G116700_v2.0.a1
pyrus_communis pycom10g07310
rosa_chinensis RchiOBHm_Chr6g0259011
rosa_laevigata RLG00000014564
rosa_multiflora Rmu_ssc0000050.1_g000116
rosa_roxburghii Rroxscaffold_7G00206250 Rroxscaffold_7G00206420
rosa_rugosa Rorug05G0584800
rosa_samantha Rh6AG101200 Rh6BG093300 Rh6CG090700 Rh6DG084600
rosa_wichuraiana Rw6G008800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 396
AciI CCGC 3 cut(s) 24, 748, 800
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 3 cut(s) 235, 752, 768
AcuI CTGAAG 2 cut(s) 119, 333
AcyI GRCGYC 2 cut(s) 114, 141
AfaI GTAC 1 cut(s) 874
AfiI CCNNNNNNNGG 2 cut(s) 20, 100
AgsI TTSAA 6 cut(s) 226, 235, 359, 424, 613, 844
AjnI CCWGG 4 cut(s) 108, 399, 772, 980
AluBI AGCT 8 cut(s) 301, 419, 493, 625, 779, 810, 848, 962
AluI AGCT 8 cut(s) 301, 419, 493, 625, 779, 810, 848, 962
Alw21I GWGCWC 3 cut(s) 409, 640, 781
Alw44I GTGCAC 1 cut(s) 405
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 4 cut(s) 4, 25, 45, 102
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 5 cut(s) 563, 566, 569, 660, 854
ApoI RAATTY 3 cut(s) 235, 752, 768
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 5 cut(s) 4, 5, 91, 103, 485
AsuHPI GGTGA 1 cut(s) 804
AvaII GGWCC 2 cut(s) 91, 485
BaeGI GKGCMC 2 cut(s) 8, 409
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 2 cut(s) 8, 781
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 23, 620
Bbv12I GWGCWC 3 cut(s) 409, 640, 781
BbvI GCAGC 5 cut(s) 550, 553, 556, 672, 841
BccI CCATC 2 cut(s) 125, 509
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 4 cut(s) 110, 401, 774, 982
BfaI CTAG 3 cut(s) 342, 393, 816
BisI GCNGC 6 cut(s) 25, 564, 567, 570, 661, 855
BlpI GCTNAGC 1 cut(s) 806
BlsI GCNGC 6 cut(s) 26, 565, 568, 571, 662, 856
Bme1390I CCNGG 4 cut(s) 110, 401, 774, 982
Bme18I GGWCC 2 cut(s) 91, 485
BmgT120I GGNCC 5 cut(s) 4, 5, 91, 103, 485
BmiI GGNNCC 3 cut(s) 6, 93, 398
BmrFI CCNGG 4 cut(s) 110, 401, 774, 982
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 670, 843, 892
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 2 cut(s) 23, 620
BpmI CTGGAG 2 cut(s) 92, 964
Bpu1102I GCTNAGC 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 797
BsaHI GRCGYC 2 cut(s) 114, 141
BsaJI CCNNGG 3 cut(s) 99, 400, 981
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 100
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 435, 558
BseBI CCWGG 4 cut(s) 110, 401, 774, 982
BseDI CCNNGG 3 cut(s) 99, 400, 981
BseLI CCNNNNNNNGG 2 cut(s) 20, 100
BseMI GCAATG 2 cut(s) 435, 558
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 2 cut(s) 8, 409
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 5 cut(s) 550, 553, 556, 672, 841
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 4 cut(s) 6, 27, 47, 104
BshNI GGYRCC 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 409, 640, 781
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 20, 100
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 4 cut(s) 6, 27, 47, 104
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 4 cut(s) 8, 409, 640, 781
Bsp1407I TGTACA 1 cut(s) 872
Bsp143I GATC 2 cut(s) 79, 145
Bsp1720I GCTNAGC 1 cut(s) 806
BspACI CCGC 3 cut(s) 24, 748, 800
BspANI GGCC 4 cut(s) 6, 27, 47, 104
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 6, 93, 398
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 435, 558
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 872
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 99, 400, 981
BssMI GATC 2 cut(s) 79, 145
BssNI GRCGYC 2 cut(s) 114, 141
BssSI CACGAG 1 cut(s) 714
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 4 cut(s) 110, 401, 774, 982
Bst4CI ACNGT 5 cut(s) 251, 350, 929, 952, 1009
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 2 cut(s) 114, 141
BstAUI TGTACA 1 cut(s) 872
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 2 cut(s) 636, 832
BstDEI CTNAG 3 cut(s) 381, 641, 806
BstKTI GATC 2 cut(s) 82, 148
BstMBI GATC 2 cut(s) 79, 145
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 8 cut(s) 425, 473, 560, 569, 631, 836, 845, 854
BstNI CCWGG 4 cut(s) 110, 401, 774, 982
BstSCI CCNGG 4 cut(s) 108, 399, 772, 980
BstSLI GKGCMC 2 cut(s) 8, 409
BstV1I GCAGC 5 cut(s) 550, 553, 556, 672, 841
BstV2I GAAGAC 2 cut(s) 23, 620
BstXI CCANNNNNNTGG 1 cut(s) 737
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 4 cut(s) 6, 27, 47, 104
BtgZI GCGATG 2 cut(s) 276, 820
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 3 cut(s) 150, 215, 550
Cac8I GCNNGC 2 cut(s) 636, 832
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 4, 5, 91, 103, 485
CseI GACGC 2 cut(s) 122, 130
Csp6I GTAC 1 cut(s) 873
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 4 cut(s) 88, 446, 604, 890
CviQI GTAC 1 cut(s) 873
DdeI CTNAG 3 cut(s) 381, 641, 806
DpnI GATC 2 cut(s) 81, 147
DpnII GATC 2 cut(s) 79, 145
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 779
EclXI CGGCCG 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 8, 781
Eco47I GGWCC 2 cut(s) 91, 485
Eco52I CGGCCG 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 779
Eco57I CTGAAG 2 cut(s) 119, 333
EcoICRI GAGCTC 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 2 cut(s) 235, 768
EcoRII CCWGG 4 cut(s) 108, 399, 772, 980
EcoT22I ATGCAT 1 cut(s) 920
EcoT38I GRGCYC 2 cut(s) 8, 781
FaeI CATG 4 cut(s) 91, 449, 607, 893
FalI AAGNNNNNCTT 2 cut(s) 823, 855
FatI CATG 4 cut(s) 87, 445, 603, 889
FauI CCCGC 1 cut(s) 793
FauNDI CATATG 1 cut(s) 914
Fnu4HI GCNGC 6 cut(s) 25, 564, 567, 570, 661, 855
FriOI GRGCYC 2 cut(s) 8, 781
Fsp4HI GCNGC 6 cut(s) 25, 564, 567, 570, 661, 855
FspBI CTAG 3 cut(s) 342, 393, 816
GluI GCNGC 6 cut(s) 25, 564, 567, 570, 661, 855
GsuI CTGGAG 2 cut(s) 92, 964
HaeIII GGCC 4 cut(s) 6, 27, 47, 104
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 122, 130
Hin1I GRCGYC 2 cut(s) 114, 141
Hin1II CATG 4 cut(s) 91, 449, 607, 893
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 2 cut(s) 491, 960
HinfI GANTC 5 cut(s) 205, 596, 691, 788, 1016
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 804
Hpy166II GTNNAC 4 cut(s) 407, 485, 787, 935
Hpy188I TCNGA 2 cut(s) 313, 886
Hpy188III TCNNGA 6 cut(s) 61, 174, 215, 321, 342, 446
Hpy8I GTNNAC 4 cut(s) 407, 485, 787, 935
Hpy99I CGWCG 3 cut(s) 56, 80, 146
HpyAV CCTTC 6 cut(s) 58, 58, 184, 308, 418, 650
HpyCH4III ACNGT 5 cut(s) 251, 350, 929, 952, 1009
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 6 cut(s) 332, 407, 454, 572, 905, 918
HpyF10VI GCNNNNNNNGC 8 cut(s) 425, 473, 560, 569, 631, 836, 845, 854
HpyF3I CTNAG 3 cut(s) 381, 641, 806
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 2 cut(s) 114, 141
Hsp92II CATG 4 cut(s) 91, 449, 607, 893
Kzo9I GATC 2 cut(s) 79, 145
LmnI GCTCC 1 cut(s) 776
Lsp1109I GCAGC 5 cut(s) 550, 553, 556, 672, 841
LweI GCATC 3 cut(s) 670, 843, 892
MaeI CTAG 3 cut(s) 342, 393, 816
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 5 cut(s) 160, 279, 438, 586, 1009
MalI GATC 2 cut(s) 81, 147
MboI GATC 2 cut(s) 79, 145
MboII GAAGA 3 cut(s) 28, 125, 625
MhlI GDGCHC 4 cut(s) 8, 409, 640, 781
MluCI AATT 6 cut(s) 235, 307, 359, 752, 762, 768
MlyI GAGTC 2 cut(s) 605, 782
MnlI CCTC 9 cut(s) 37, 49, 94, 116, 172, 259, 349, 457, 577
Mph1103I ATGCAT 1 cut(s) 920
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 2 cut(s) 276, 698
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 4 cut(s) 110, 401, 774, 982
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 4 cut(s) 110, 401, 774, 982
MwoI GCNNNNNNNGC 8 cut(s) 425, 473, 560, 569, 631, 836, 845, 854
NdeI CATATG 1 cut(s) 914
NdeII GATC 2 cut(s) 79, 145
NlaIII CATG 4 cut(s) 91, 449, 607, 893
NlaIV GGNNCC 3 cut(s) 6, 93, 398
NmeAIII GCCGAG 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 920
PagI TCATGA 1 cut(s) 445
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 3 cut(s) 205, 691, 1016
PflFI GACNNNGTC 1 cut(s) 56
PfoI TCCNGGA 2 cut(s) 108, 772
PkrI GCNGC 6 cut(s) 26, 565, 568, 571, 662, 856
PleI GAGTC 2 cut(s) 604, 782
PpsI GAGTC 2 cut(s) 604, 782
Ppu21I YACGTR 1 cut(s) 797
Psp124BI GAGCTC 1 cut(s) 781
Psp6I CCWGG 4 cut(s) 108, 399, 772, 980
PspGI CCWGG 4 cut(s) 108, 399, 772, 980
PspN4I GGNNCC 3 cut(s) 6, 93, 398
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 5 cut(s) 4, 5, 91, 103, 485
PstNI CAGNNNCTG 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 874
RsaNI GTAC 1 cut(s) 873
SacI GAGCTC 1 cut(s) 781
SaqAI TTAA 2 cut(s) 276, 698
SatI GCNGC 6 cut(s) 25, 564, 567, 570, 661, 855
Sau3AI GATC 2 cut(s) 79, 145
Sau96I GGNCC 5 cut(s) 4, 5, 91, 103, 485
SchI GAGTC 2 cut(s) 605, 782
ScrFI CCNGG 4 cut(s) 110, 401, 774, 982
SduI GDGCHC 4 cut(s) 8, 409, 640, 781
SfaNI GCATC 3 cut(s) 670, 843, 892
SinI GGWCC 2 cut(s) 91, 485
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
Sse9I AATT 6 cut(s) 235, 307, 359, 752, 762, 768
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 3 cut(s) 24, 748, 800
SspI AATATT 1 cut(s) 537
SspMI CTAG 3 cut(s) 342, 393, 816
SstI GAGCTC 1 cut(s) 781
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 108, 399, 772, 980
TaaI ACNGT 5 cut(s) 251, 350, 929, 952, 1009
TaiI ACGT 1 cut(s) 799
TaqI TCGA 5 cut(s) 51, 75, 120, 144, 389
TasI AATT 6 cut(s) 235, 307, 359, 752, 762, 768
TatI WGTACW 1 cut(s) 872
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 3 cut(s) 205, 691, 1016
Tru1I TTAA 2 cut(s) 276, 698
Tru9I TTAA 2 cut(s) 276, 698
TscAI CASTG 3 cut(s) 157, 215, 550
TseI GCWGC 5 cut(s) 563, 566, 569, 660, 854
TspDTI ATGAA 4 cut(s) 303, 434, 592, 879
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 3 cut(s) 157, 215, 550
Tth111I GACNNNGTC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 91, 485
XapI RAATTY 3 cut(s) 235, 752, 768
XbaI TCTAGA 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 3 cut(s) 342, 393, 816
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.