MD10G1089700.v1.1

Armadillo repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015287
Physical Location & Seq
Reverse (-)
13387923 .. 13391373
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1089700.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGGGCCCACCGAAGAACGCCGCCCGTACGATCTCTCAGGAGGCCTTCGACGAGGTGGTGAAGGAGAACATGGAAGATCTCGGCATGGACCCCACCGAGGCCCTCGAAGACGCCATCCAAACCCTAACTCTCCAGGGCGTCGATCTCTCCGGGATCGTGACCTGCGTCCCCGGAGAGGGTAGTGTTAAAGACAATCCTGTGTTACAGTGCTTGGATAGATTGAGCCAGTTGAATTCTAGTCCAAACAGTCAAATTGGCGATGAAATTGTGGATTTACTTGATAAACTTACCGAGCTCTGTAAAGCCGAAGGTTCTGGGAATGCAGCAATAGCTTCTAGAAATGGAGGGGTTGAAATAGTTTGTTCTATATGTTCTAAGATTGAGATCGGGTGCTTACGCGCTGTCTTTTTGGCGTTGAGGGCATTGGCTTCATTGCTACATGATTTGCAAAGTCGAGAAGCATTTAGGGCAAGTGGTGGACCAAAGATTTTGGTGGGTATTCTAACTGATGGATTTGAGAATATTGACATAGTGAGTAGTGGTTTTTCTGTCGTTGCTGCGGCTGCAACGAGTAATGAGGTCATAAAGGAGTTATTCATGGAGTTGAAGATTGATGAGCTTATTCTGCAAGTATTGAGTGTAAAAAGGGAAGTCAGCATTGAGAGTTTGTATGATGCTATACGGGTTCTCTTAACACCTGATGATAATCGTGTTTTGGCTTCACAAGTTTATGGTTATGCGCGGAACTTTGCCAAAATTGGAATTGCTGGAGCTCTGGTTGAATCAGTACGTGGGGGGCTTAGCTCATCTAGTCTTGTTTCAGCAAGCATTGCTTTAAAGGCTGTCGCTGTCAATGATGAAATATGTACATCCATTGCCGAAAATGGTGGAATTGATGCAGTTCTCTTATGTATTGATGACAGTAGTGAACAAGGCAACAAAACTGTTGCTAAAGTTTGCTGTTCTTTGCTCTGCAAGTTGGCAGGAAGTGACGCAAATAAGAATGCCATTGTTGAGAAGAAGGGTATGGATAGGCTAATGAAACTGTCATCTAGATTTTTTGATGACCCTTCTGTCCTTCAAGAGATTATGGCTGTTATTTCTGTACTCTCCTTAAGGTCCCCAGACAATGCAGCCATTGCCATTGAAGCTGGGGCTGGAGAACTTGCCCTCCAAGCTATGCAGAAGTTCCCTGCGGCACAGCAAATGCAGAGGAATTCCTGTCTCATGATTCGGAATCTTGTCTCAAGAAACGCAGCCAACAGAACTATTCTGCTCAATAGCGGTATGGAGAAACACATAAGGATGGCCAAGCAAAACCATGTAAGTTGTAATGAAGCCGCTACCGATGCATTGAGGGATCTGGGACTTGACGACTACAACATGTAA

Protein Analysis

463

Amino Acids

49.19

Weight (kDa)

4.79

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LRRK2 PF23744 278 - 451 1.9e-06 LRRK2 ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33945
fragaria_vesca FvH4_2g06790
malus_domestica MD10G1089700.v1.1
prunus_persica Prupe.8G116700_v2.0.a1
pyrus_communis pycom10g07310
rosa_chinensis RchiOBHm_Chr6g0259011
rosa_laevigata RLG00000014564
rosa_multiflora Rmu_ssc0000050.1_g000116
rosa_roxburghii Rroxscaffold_7G00206250 Rroxscaffold_7G00206420
rosa_rugosa Rorug05G0584800
rosa_samantha Rh6AG101200 Rh6BG093300 Rh6CG090700 Rh6DG084600
rosa_wichuraiana Rw6G008800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1073
Acc36I ACCTGC 1 cut(s) 170
AccII CGCG 2 cut(s) 399, 742
AciI CCGC 6 cut(s) 21, 560, 742, 1196, 1284, 1341
AclWI GGATC 2 cut(s) 161, 1368
AcoI YGGCCR 1 cut(s) 1308
AcsI RAATTY 2 cut(s) 232, 1216
AcyI GRCGYC 2 cut(s) 111, 138
AfaI GTAC 4 cut(s) 28, 789, 868, 1107
AfiI CCNNNNNNNGG 3 cut(s) 97, 175, 176
AflII CTTAAG 1 cut(s) 1114
AflIII ACRYGT 1 cut(s) 1383
AgsI TTSAA 6 cut(s) 232, 353, 607, 782, 1082, 1148
AjnI CCWGG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 1155, 1187
AluBI AGCT 7 cut(s) 295, 332, 619, 773, 804, 1151, 1178
AluI AGCT 7 cut(s) 295, 332, 619, 773, 804, 1151, 1178
Alw21I GWGCWC 2 cut(s) 297, 775
Alw26I GTCTC 2 cut(s) 1229, 1249
AlwI GGATC 2 cut(s) 161, 1368
AoxI GGCC 4 cut(s) 4, 42, 99, 1308
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 5 cut(s) 323, 557, 563, 1133, 1256
ApoI RAATTY 2 cut(s) 232, 1216
AspLEI GCGC 2 cut(s) 401, 742
AspS9I GGNCC 6 cut(s) 4, 5, 88, 100, 479, 1119
AsuC2I CCSGG 2 cut(s) 151, 171
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 3 cut(s) 88, 479, 1119
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 1310
BanII GRGCYC 3 cut(s) 8, 297, 775
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 297, 775
BbvI GCAGC 5 cut(s) 335, 544, 550, 1145, 1268
BccI CCATC 3 cut(s) 122, 503, 1300
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 2 cut(s) 151, 171
BcoDI GTCTC 2 cut(s) 1229, 1249
BfaI CTAG 4 cut(s) 237, 336, 810, 1053
BfrI CTTAAG 1 cut(s) 1114
BfuAI ACCTGC 1 cut(s) 170
BglII AGATCT 1 cut(s) 76
BisI GCNGC 9 cut(s) 21, 324, 558, 561, 564, 1134, 1197, 1257, 1341
BlpI GCTNAGC 1 cut(s) 800
BlsI GCNGC 9 cut(s) 22, 325, 559, 562, 565, 1135, 1198, 1258, 1342
Bme1390I CCNGG 3 cut(s) 134, 151, 171
Bme18I GGWCC 3 cut(s) 88, 479, 1119
BmgT120I GGNCC 6 cut(s) 4, 5, 88, 100, 479, 1119
BmiI GGNNCC 3 cut(s) 6, 90, 1121
BmrFI CCNGG 3 cut(s) 134, 151, 171
BmsI GCATC 3 cut(s) 664, 886, 1339
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 3 cut(s) 116, 789, 1179
Bpu1102I GCTNAGC 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 1231
BpuMI CCSGG 2 cut(s) 151, 171
BsaAI YACGTR 1 cut(s) 791
BsaBI GATNNNNATC 2 cut(s) 383, 705
BsaHI GRCGYC 2 cut(s) 111, 138
BsaJI CCNNGG 3 cut(s) 96, 133, 169
BsaXI ACNNNNNCTCC 4 cut(s) 762, 792, 1155, 1185
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 175, 176
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 4 cut(s) 431, 828, 873, 1137
Bse8I GATNNNNATC 2 cut(s) 383, 705
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 96, 133, 169
BseGI GGATG 3 cut(s) 114, 869, 1311
BseJI GATNNNNATC 2 cut(s) 383, 705
BseLI CCNNNNNNNGG 3 cut(s) 97, 175, 176
BseMI GCAATG 4 cut(s) 431, 828, 873, 1137
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 5 cut(s) 335, 544, 550, 1145, 1268
BseYI CCCAGC 1 cut(s) 1151
Bsh1236I CGCG 2 cut(s) 399, 742
BshFI GGCC 4 cut(s) 6, 44, 101, 1310
BsiHKAI GWGCWC 2 cut(s) 297, 775
BsiSI CCGG 2 cut(s) 150, 171
BsiWI CGTACG 1 cut(s) 26
BslFI GGGAC 3 cut(s) 152, 1105, 1380
BslI CCNNNNNNNGG 3 cut(s) 97, 175, 176
BsmAI GTCTC 2 cut(s) 1229, 1249
BsmFI GGGAC 3 cut(s) 152, 1105, 1380
BsmI GAATGC 2 cut(s) 325, 1009
BsnI GGCC 4 cut(s) 6, 44, 101, 1310
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 297, 775
Bsp1407I TGTACA 1 cut(s) 866
Bsp143I GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
Bsp1720I GCTNAGC 1 cut(s) 800
BspACI CCGC 6 cut(s) 21, 560, 742, 1196, 1284, 1341
BspANI GGCC 4 cut(s) 6, 44, 101, 1310
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 2 cut(s) 399, 742
BspHI TCATGA 1 cut(s) 1227
BspLI GGNNCC 3 cut(s) 6, 90, 1121
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 161, 1368
BspTI CTTAAG 1 cut(s) 1114
BsrDI GCAATG 4 cut(s) 431, 828, 873, 1137
BsrGI TGTACA 1 cut(s) 866
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 96, 133, 169
BssMI GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
BssNI GRCGYC 2 cut(s) 111, 138
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 5 cut(s) 207, 248, 923, 946, 1047
BstACI GRCGYC 2 cut(s) 111, 138
BstAFI CTTAAG 1 cut(s) 1114
BstAPI GCANNNNNTGC 2 cut(s) 830, 1139
BstAUI TGTACA 1 cut(s) 866
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 3 cut(s) 36, 375, 800
BstF5I GGATG 3 cut(s) 114, 869, 1311
BstFNI CGCG 2 cut(s) 399, 742
BstHHI GCGC 2 cut(s) 401, 742
BstKTI GATC 6 cut(s) 33, 79, 145, 156, 387, 1363
BstMAI GTCTC 2 cut(s) 1229, 1249
BstMBI GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 1387
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 132, 149, 169
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 2 cut(s) 399, 742
BstV1I GCAGC 5 cut(s) 335, 544, 550, 1145, 1268
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 76, 1360
BstYI RGATCY 2 cut(s) 76, 1360
BsuRI GGCC 4 cut(s) 6, 44, 101, 1310
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 114, 869, 1311
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 826
CciI TCATGA 1 cut(s) 1227
CfoI GCGC 2 cut(s) 401, 742
Cfr13I GGNCC 6 cut(s) 4, 5, 88, 100, 479, 1119
CseI GACGC 4 cut(s) 119, 127, 154, 1001
Csp6I GTAC 4 cut(s) 27, 788, 867, 1106
CviAII CATG 7 cut(s) 70, 85, 440, 598, 1228, 1322, 1384
CviQI GTAC 4 cut(s) 27, 788, 867, 1106
DdeI CTNAG 3 cut(s) 36, 375, 800
DpnI GATC 6 cut(s) 32, 78, 144, 155, 386, 1362
DpnII GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
DraI TTTAAA 1 cut(s) 837
DrdI GACNNNNNNGTC 1 cut(s) 1073
DseDI GACNNNNNNGTC 1 cut(s) 1073
EaeI YGGCCR 1 cut(s) 1308
Ecl136II GAGCTC 2 cut(s) 295, 773
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 3 cut(s) 8, 297, 775
Eco47I GGWCC 3 cut(s) 88, 479, 1119
Eco53kI GAGCTC 2 cut(s) 295, 773
EcoICRI GAGCTC 2 cut(s) 295, 773
EcoO109I RGGNCCY 2 cut(s) 100, 1119
EcoRI GAATTC 2 cut(s) 232, 1216
EcoRII CCWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 1354
EcoT38I GRGCYC 3 cut(s) 8, 297, 775
FaeI CATG 7 cut(s) 73, 88, 443, 601, 1231, 1325, 1387
FalI AAGNNNNNCTT 2 cut(s) 817, 849
FaqI GGGAC 3 cut(s) 152, 1105, 1380
FatI CATG 7 cut(s) 69, 84, 439, 597, 1227, 1321, 1383
Fnu4HI GCNGC 9 cut(s) 21, 324, 558, 561, 564, 1134, 1197, 1257, 1341
FokI GGATG 3 cut(s) 101, 856, 1318
FriOI GRGCYC 3 cut(s) 8, 297, 775
Fsp4HI GCNGC 9 cut(s) 21, 324, 558, 561, 564, 1134, 1197, 1257, 1341
FspBI CTAG 4 cut(s) 237, 336, 810, 1053
GlaI GCGC 2 cut(s) 400, 741
GluI GCNGC 9 cut(s) 21, 324, 558, 561, 564, 1134, 1197, 1257, 1341
GsaI CCCAGC 1 cut(s) 1155
GsuI CTGGAG 3 cut(s) 116, 789, 1179
HaeIII GGCC 4 cut(s) 6, 44, 101, 1310
HapII CCGG 2 cut(s) 150, 171
HgaI GACGC 4 cut(s) 119, 127, 154, 1001
HhaI GCGC 2 cut(s) 401, 742
Hin1I GRCGYC 2 cut(s) 111, 138
Hin1II CATG 7 cut(s) 73, 88, 443, 601, 1231, 1325, 1387
Hin6I GCGC 2 cut(s) 399, 740
HinP1I GCGC 2 cut(s) 399, 740
HinfI GANTC 3 cut(s) 782, 1231, 1237
HpaII CCGG 2 cut(s) 150, 171
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 479, 929
Hpy188I TCNGA 1 cut(s) 1236
Hpy188III TCNNGA 8 cut(s) 38, 157, 336, 455, 1053, 1082, 1228, 1248
Hpy8I GTNNAC 2 cut(s) 479, 929
Hpy99I CGWCG 2 cut(s) 53, 143
HpyAV CCTTC 6 cut(s) 55, 55, 302, 1015, 1080, 1088
HpyCH4III ACNGT 5 cut(s) 207, 248, 923, 946, 1047
HpyCH4IV ACGT 1 cut(s) 790
HpyF3I CTNAG 3 cut(s) 36, 375, 800
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 2 cut(s) 111, 138
Hsp92II CATG 7 cut(s) 73, 88, 443, 601, 1231, 1325, 1387
HspAI GCGC 2 cut(s) 399, 740
Kzo9I GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 5 cut(s) 335, 544, 550, 1145, 1268
LweI GCATC 3 cut(s) 664, 886, 1339
MaeI CTAG 4 cut(s) 237, 336, 810, 1053
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 157, 201, 989
MalI GATC 6 cut(s) 32, 78, 144, 155, 386, 1362
MboI GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
MboII GAAGA 5 cut(s) 25, 86, 119, 619, 1030
MflI RGATCY 2 cut(s) 76, 1360
MhlI GDGCHC 3 cut(s) 8, 297, 775
MlsI TGGCCA 1 cut(s) 1310
MluCI AATT 7 cut(s) 232, 252, 264, 756, 762, 891, 1216
MluNI TGGCCA 1 cut(s) 1310
Mox20I TGGCCA 1 cut(s) 1310
Mph1103I ATGCAT 1 cut(s) 1354
MscI TGGCCA 1 cut(s) 1310
MseI TTAA 4 cut(s) 186, 692, 836, 1115
MslI CAYNNNNRTG 1 cut(s) 1304
Msp20I TGGCCA 1 cut(s) 1310
MspCI CTTAAG 1 cut(s) 1114
MspI CCGG 2 cut(s) 150, 171
MspR9I CCNGG 3 cut(s) 134, 151, 171
Mva1269I GAATGC 2 cut(s) 325, 1009
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 399, 742
NciI CCSGG 2 cut(s) 151, 171
NdeII GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
NlaIII CATG 7 cut(s) 73, 88, 443, 601, 1231, 1325, 1387
NlaIV GGNNCC 3 cut(s) 6, 90, 1121
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 157, 989
NsiI ATGCAT 1 cut(s) 1354
NspI RCATGY 1 cut(s) 1387
PagI TCATGA 1 cut(s) 1227
PceI AGGCCT 1 cut(s) 44
PciI ACATGT 1 cut(s) 1383
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 2 cut(s) 325, 1009
PfeI GAWTC 3 cut(s) 782, 1231, 1237
Pfl23II CGTACG 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 9 cut(s) 22, 325, 559, 562, 565, 1135, 1198, 1258, 1342
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 1119
PscI ACATGT 1 cut(s) 1383
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 297, 775
Psp5II RGGWCCY 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 1151
PspGI CCWGG 1 cut(s) 132
PspLI CGTACG 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 6, 90, 1121
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 6 cut(s) 4, 5, 88, 100, 479, 1119
PspPPI RGGWCCY 1 cut(s) 1119
PsuI RGATCY 2 cut(s) 76, 1360
RsaI GTAC 4 cut(s) 28, 789, 868, 1107
RsaNI GTAC 4 cut(s) 27, 788, 867, 1106
RseI CAYNNNNRTG 1 cut(s) 1304
SacI GAGCTC 2 cut(s) 297, 775
SaqAI TTAA 4 cut(s) 186, 692, 836, 1115
SatI GCNGC 9 cut(s) 21, 324, 558, 561, 564, 1134, 1197, 1257, 1341
Sau3AI GATC 6 cut(s) 30, 76, 142, 153, 384, 1360
Sau96I GGNCC 6 cut(s) 4, 5, 88, 100, 479, 1119
ScrFI CCNGG 3 cut(s) 134, 151, 171
SduI GDGCHC 3 cut(s) 8, 297, 775
SfaNI GCATC 3 cut(s) 664, 886, 1339
SinI GGWCC 3 cut(s) 88, 479, 1119
SmiMI CAYNNNNRTG 1 cut(s) 1304
SmlI CTYRAG 2 cut(s) 1114, 1246
SmoI CTYRAG 2 cut(s) 1114, 1246
Sse9I AATT 7 cut(s) 232, 252, 264, 756, 762, 891, 1216
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 6 cut(s) 21, 560, 742, 1196, 1284, 1341
SspI AATATT 1 cut(s) 523
SspMI CTAG 4 cut(s) 237, 336, 810, 1053
SstI GAGCTC 2 cut(s) 297, 775
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 132, 149, 169
TaaI ACNGT 5 cut(s) 207, 248, 923, 946, 1047
TaiI ACGT 1 cut(s) 793
TaqI TCGA 4 cut(s) 48, 105, 141, 454
TasI AATT 7 cut(s) 232, 252, 264, 756, 762, 891, 1216
TatI WGTACW 2 cut(s) 866, 1105
TauI GCSGC 4 cut(s) 23, 563, 1199, 1343
TfiI GAWTC 3 cut(s) 782, 1231, 1237
Tru1I TTAA 4 cut(s) 186, 692, 836, 1115
Tru9I TTAA 4 cut(s) 186, 692, 836, 1115
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 2 cut(s) 157, 989
TseI GCWGC 5 cut(s) 323, 557, 563, 1133, 1256
Tsp45I GTSAC 2 cut(s) 157, 989
TspDTI ATGAA 6 cut(s) 276, 420, 586, 873, 1055, 1350
TspRI CASTG 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 1114
VpaK11BI GGWCC 3 cut(s) 88, 479, 1119
XapI RAATTY 2 cut(s) 232, 1216
XbaI TCTAGA 2 cut(s) 335, 1052
XceI RCATGY 1 cut(s) 1387
XspI CTAG 4 cut(s) 237, 336, 810, 1053
Zsp2I ATGCAT 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.