Rroxscaffold_7G00206250

Armadillo repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
55929471 .. 55934865
5395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206250.1

Sequence Viewer

Length: 1305 bp
ATGGACCCCACCGAGGCCCTCCAGGACGCCATCGAAACCCTAACTCTTCAGGGCGTCGATCTCTCTGGGATTGTCACCTGTGTGCCAGGAGAGGGTGGCGTGAAGGACAACCCTGTGATTCAGTGTCTGGATAGATTGAAGCAGTTGAATTCTGGCGAAAACAGTCAAGTAGGCGATGAGGAGATAGCTAAGTTACTTGATGAACTTACAGAGCTGTGTAATTCTGAAGCTTCTGGAAACTCTGCAATAGCCGCTAGAAACAGTGCGGTAGAATTGATTTGTTCTATATGTTCTAAGGTTTCGACTGGGTGCCATGGTGCACTTGTTTCCGCTTTGAAGGCAATGGCTTCGTTACTTCATGATTTGCAAAGTAGAGAGGCATTTAGAGCAAGTGGTGGACCAAAGCTTGTGGTGGGCATTCTAACTGATGGATTTGAGAATATAGAAATATTGAGCAGTGGCTTTGCTGTCATTGCTGCTGCTGCAACGGGTAATGAGGTTACAAAAGAGTCTTTCATGGAGTTGAAGACTGATGAGCTTATTCTGCGAGCACTTAGTATAAAAAGTGAAGGCAGCGTTGATAGTTTATATGATGCCATACGGATTCTCTTAACACCTGATGATACTCGTGTTTTGGCTTCCCAAGTTTATGGTTATGCGCGGAAATTTGCCAAAATTGGAATTCCAGGAGCTCTGGTTGACTCCATACGTGCGGGGCTAAGCTCACCTAGTCTTGTTTCAGCAAGCATCGCTTTGAAAGCTGTTGCTGCCAATGATGAAATATGTACAACCATTTCTGAACATGGTGGTATTGATGCAGTTCTCATATGCATTGATGACAGTAGTGAACAAGGCAATAAAACTGTTGCTCAAGCTTGTTGTTCTTTGCTGTCCAGGTTGGCAGGAAATGACACAAATAAGAATGCCATTGTTGAGAAGGGAATGGATAGGCTAATGAAACTCTCCGGTAGATTTTCTGATGACCCTTCAGTCCTGCAAGAGATTATGTCTCTTATTTCAGTACTTGCCTTAAGATCCCCTGAAAATGCGGCCCGTGCAATTGAAGCTGGGGCTGGAGAACTTGCAATCCAAGCTATGCAGAACTTCCCTGCAGCACAGCTACTGCAAAGGAATTGTTGTCTCATGATCCGGAATCTTGTTGTAAGAAACTCAGAAAACAGAACAATTATGCTCAATAGTGGTGTTGAAAATTGCATAAGGAAGGCCAAGCAAACTCATGCAATCTGCAAGGAAGCCGCTACAGACGCCCTGAGGGATTTGGGATTAGATGATTACTACTTGTAA

Protein Analysis

434

Amino Acids

45.92

Weight (kDa)

4.79

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33945
fragaria_vesca FvH4_2g06790
malus_domestica MD10G1089700.v1.1
prunus_persica Prupe.8G116700_v2.0.a1
pyrus_communis pycom10g07310
rosa_chinensis RchiOBHm_Chr6g0259011
rosa_laevigata RLG00000014564
rosa_multiflora Rmu_ssc0000050.1_g000116
rosa_roxburghii Rroxscaffold_7G00206250 Rroxscaffold_7G00206420
rosa_rugosa Rorug05G0584800
rosa_samantha Rh6AG101200 Rh6BG093300 Rh6CG090700 Rh6DG084600
rosa_wichuraiana Rw6G008800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 309
AccII CGCG 1 cut(s) 661
AccIII TCCGGA 1 cut(s) 1149
AciI CCGC 7 cut(s) 252, 266, 330, 661, 713, 1049, 1257
AclWI GGATC 2 cut(s) 1029, 1141
AcsI RAATTY 3 cut(s) 148, 665, 681
AcuI CTGAAG 3 cut(s) 32, 246, 972
AcyI GRCGYC 3 cut(s) 27, 54, 1266
AfaI GTAC 2 cut(s) 787, 1023
AfiI CCNNNNNNNGG 2 cut(s) 13, 92
AflII CTTAAG 1 cut(s) 1030
AgsI TTSAA 7 cut(s) 139, 148, 337, 526, 757, 1064, 1208
AjnI CCWGG 4 cut(s) 21, 85, 685, 893
AleI CACNNNNGTG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
Alw21I GWGCWC 3 cut(s) 322, 553, 694
Alw26I GTCTC 2 cut(s) 1014, 1145
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 2 cut(s) 1029, 1141
AlwNI CAGNNNCTG 2 cut(s) 127, 1123
Aor13HI TCCGGA 1 cut(s) 1149
AoxI GGCC 3 cut(s) 15, 1050, 1224
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 6 cut(s) 476, 479, 482, 573, 767, 1112
ApoI RAATTY 3 cut(s) 148, 665, 681
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 4 cut(s) 4, 16, 398, 1051
AsuHPI GGTGA 2 cut(s) 67, 717
AvaII GGWCC 2 cut(s) 4, 398
AxyI CCTNAGG 1 cut(s) 1271
BaeGI GKGCMC 1 cut(s) 322
BaeI ACNNNNGTAYC 2 cut(s) 615, 648
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 694
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 3 cut(s) 322, 553, 694
BbvI GCAGC 6 cut(s) 463, 466, 469, 585, 754, 1124
BccI CCATC 2 cut(s) 38, 422
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 4 cut(s) 23, 87, 687, 895
BcoDI GTCTC 2 cut(s) 1014, 1145
BfaI CTAG 2 cut(s) 255, 729
BfmI CTRYAG 2 cut(s) 1110, 1260
BfrI CTTAAG 1 cut(s) 1030
BisI GCNGC 9 cut(s) 252, 477, 480, 483, 574, 768, 1050, 1113, 1257
BlpI GCTNAGC 1 cut(s) 719
BlsI GCNGC 9 cut(s) 253, 478, 481, 484, 575, 769, 1051, 1114, 1258
BmcAI AGTACT 1 cut(s) 1023
Bme1390I CCNGG 4 cut(s) 23, 87, 687, 895
Bme18I GGWCC 2 cut(s) 4, 398
BmgT120I GGNCC 4 cut(s) 4, 16, 398, 1051
BmiI GGNNCC 2 cut(s) 6, 311
BmrFI CCNGG 4 cut(s) 23, 87, 687, 895
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 583, 756, 805
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 2 cut(s) 5, 1095
Bpu1102I GCTNAGC 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 855
BsaAI YACGTR 1 cut(s) 710
BsaHI GRCGYC 3 cut(s) 27, 54, 1266
BsaJI CCNNGG 2 cut(s) 12, 313
BsaWI WCCGGW 2 cut(s) 965, 1149
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 92
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 1271
Bse3DI GCAATG 2 cut(s) 348, 471
BseAI TCCGGA 1 cut(s) 1149
BseBI CCWGG 4 cut(s) 23, 87, 687, 895
BseDI CCNNGG 2 cut(s) 12, 313
BseLI CCNNNNNNNGG 2 cut(s) 13, 92
BseMI GCAATG 2 cut(s) 348, 471
BseMII CTCAG 2 cut(s) 1185, 1262
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 6 cut(s) 463, 466, 469, 585, 754, 1124
BseYI CCCAGC 1 cut(s) 1067
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 3 cut(s) 17, 1052, 1226
BshNI GGYRCC 1 cut(s) 309
BsiHKAI GWGCWC 3 cut(s) 322, 553, 694
BsiSI CCGG 2 cut(s) 966, 1150
BslI CCNNNNNNNGG 2 cut(s) 13, 92
BsmAI GTCTC 2 cut(s) 1014, 1145
BsmI GAATGC 2 cut(s) 417, 928
BsnI GGCC 3 cut(s) 17, 1052, 1226
Bsp1286I GDGCHC 3 cut(s) 322, 553, 694
Bsp13I TCCGGA 1 cut(s) 1149
Bsp1407I TGTACA 1 cut(s) 785
Bsp143I GATC 3 cut(s) 58, 1034, 1146
Bsp1720I GCTNAGC 1 cut(s) 719
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 7 cut(s) 252, 266, 330, 661, 713, 1049, 1257
BspANI GGCC 3 cut(s) 17, 1052, 1226
BspCNI CTCAG 2 cut(s) 1184, 1263
BspEI TCCGGA 1 cut(s) 1149
BspFNI CGCG 1 cut(s) 661
BspHI TCATGA 2 cut(s) 358, 1143
BspLI GGNNCC 2 cut(s) 6, 311
BspMAI CTGCAG 1 cut(s) 1114
BspPI GGATC 2 cut(s) 1029, 1141
BspT107I GGYRCC 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 1030
BsrDI GCAATG 2 cut(s) 348, 471
BsrGI TGTACA 1 cut(s) 785
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 12, 313
BssMI GATC 3 cut(s) 58, 1034, 1146
BssNI GRCGYC 3 cut(s) 27, 54, 1266
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 23, 87, 687, 895
Bst4CI ACNGT 4 cut(s) 164, 263, 842, 865
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 3 cut(s) 27, 54, 1266
BstAFI CTTAAG 1 cut(s) 1030
BstAUI TGTACA 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 710
BstC8I GCNNGC 2 cut(s) 549, 745
BstDEI CTNAG 6 cut(s) 189, 294, 554, 719, 1171, 1271
BstDSI CCRYGG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 661
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 3 cut(s) 61, 1037, 1149
BstMAI GTCTC 2 cut(s) 1014, 1145
BstMBI GATC 3 cut(s) 58, 1034, 1146
BstNI CCWGG 4 cut(s) 23, 87, 687, 895
BstSCI CCNGG 4 cut(s) 21, 85, 685, 893
BstSFI CTRYAG 2 cut(s) 1110, 1260
BstSLI GKGCMC 1 cut(s) 322
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 6 cut(s) 463, 466, 469, 585, 754, 1124
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 1034
BstXI CCANNNNNNTGG 1 cut(s) 650
BstYI RGATCY 1 cut(s) 1034
Bsu36I CCTNAGG 1 cut(s) 1271
BsuRI GGCC 3 cut(s) 17, 1052, 1226
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 2 cut(s) 189, 733
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 128, 268, 463
Cac8I GCNNGC 2 cut(s) 549, 745
CaiI CAGNNNCTG 2 cut(s) 127, 1123
CciI TCATGA 2 cut(s) 358, 1143
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 4 cut(s) 4, 16, 398, 1051
CseI GACGC 3 cut(s) 35, 43, 1274
Csp6I GTAC 2 cut(s) 786, 1022
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 6 cut(s) 314, 359, 517, 803, 1144, 1238
CviQI GTAC 2 cut(s) 786, 1022
DdeI CTNAG 6 cut(s) 189, 294, 554, 719, 1171, 1271
DpnI GATC 3 cut(s) 60, 1036, 1148
DpnII GATC 3 cut(s) 58, 1034, 1146
DrdI GACNNNNNNGTC 1 cut(s) 989
DseDI GACNNNNNNGTC 1 cut(s) 989
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 4, 398
Eco53kI GAGCTC 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 32, 246, 972
Eco81I CCTNAGG 1 cut(s) 1271
EcoICRI GAGCTC 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 16
EcoRI GAATTC 2 cut(s) 148, 681
EcoRII CCWGG 4 cut(s) 21, 85, 685, 893
EcoT14I CCWWGG 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 833
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 6 cut(s) 317, 362, 520, 806, 1147, 1241
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FatI CATG 6 cut(s) 313, 358, 516, 802, 1143, 1237
FauI CCCGC 1 cut(s) 706
FauNDI CATATG 1 cut(s) 827
Fnu4HI GCNGC 9 cut(s) 252, 477, 480, 483, 574, 768, 1050, 1113, 1257
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 9 cut(s) 252, 477, 480, 483, 574, 768, 1050, 1113, 1257
FspBI CTAG 2 cut(s) 255, 729
GlaI GCGC 1 cut(s) 660
GluI GCNGC 9 cut(s) 252, 477, 480, 483, 574, 768, 1050, 1113, 1257
GsaI CCCAGC 1 cut(s) 1071
GsuI CTGGAG 2 cut(s) 5, 1095
HaeIII GGCC 3 cut(s) 17, 1052, 1226
HapII CCGG 2 cut(s) 966, 1150
HgaI GACGC 3 cut(s) 35, 43, 1274
HhaI GCGC 1 cut(s) 661
Hin1I GRCGYC 3 cut(s) 27, 54, 1266
Hin1II CATG 6 cut(s) 317, 362, 520, 806, 1147, 1241
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 3 cut(s) 228, 404, 873
HinfI GANTC 5 cut(s) 118, 509, 604, 701, 1153
HpaII CCGG 2 cut(s) 966, 1150
HphI GGTGA 2 cut(s) 67, 717
Hpy166II GTNNAC 4 cut(s) 320, 398, 700, 848
Hpy188I TCNGA 4 cut(s) 226, 799, 979, 1174
Hpy188III TCNNGA 5 cut(s) 128, 234, 359, 1144, 1150
Hpy8I GTNNAC 4 cut(s) 320, 398, 700, 848
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 6 cut(s) 97, 331, 563, 931, 996, 1216
HpyCH4III ACNGT 4 cut(s) 164, 263, 842, 865
HpyCH4IV ACGT 1 cut(s) 709
HpyF3I CTNAG 6 cut(s) 189, 294, 554, 719, 1171, 1271
HpySE526I ACGT 1 cut(s) 709
Hsp92I GRCGYC 3 cut(s) 27, 54, 1266
Hsp92II CATG 6 cut(s) 317, 362, 520, 806, 1147, 1241
HspAI GCGC 1 cut(s) 659
Kpn2I TCCGGA 1 cut(s) 1149
Kzo9I GATC 3 cut(s) 58, 1034, 1146
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 6 cut(s) 463, 466, 469, 585, 754, 1124
LweI GCATC 3 cut(s) 583, 756, 805
MaeI CTAG 2 cut(s) 255, 729
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 4 cut(s) 73, 192, 351, 499
MalI GATC 3 cut(s) 60, 1036, 1148
MboI GATC 3 cut(s) 58, 1034, 1146
MboII GAAGA 2 cut(s) 38, 538
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 1 cut(s) 1034
MhlI GDGCHC 3 cut(s) 322, 553, 694
MlyI GAGTC 2 cut(s) 518, 695
MnlI CCTC 7 cut(s) 7, 29, 85, 172, 370, 490, 1266
Mph1103I ATGCAT 1 cut(s) 833
MroI TCCGGA 1 cut(s) 1149
MseI TTAA 2 cut(s) 611, 1031
MslI CAYNNNNRTG 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 1030
MspI CCGG 2 cut(s) 966, 1150
MspR9I CCNGG 4 cut(s) 23, 87, 687, 895
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 2 cut(s) 417, 928
MvaI CCWGG 4 cut(s) 23, 87, 687, 895
MvnI CGCG 1 cut(s) 661
NcoI CCATGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 827
NdeII GATC 3 cut(s) 58, 1034, 1146
NlaIII CATG 6 cut(s) 317, 362, 520, 806, 1147, 1241
NlaIV GGNNCC 2 cut(s) 6, 311
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 833
OliI CACNNNNGTG 1 cut(s) 80
PagI TCATGA 2 cut(s) 358, 1143
PctI GAATGC 2 cut(s) 417, 928
PfeI GAWTC 3 cut(s) 118, 604, 1153
PfoI TCCNGGA 2 cut(s) 21, 685
PkrI GCNGC 9 cut(s) 253, 478, 481, 484, 575, 769, 1051, 1114, 1258
PleI GAGTC 2 cut(s) 517, 695
PpsI GAGTC 2 cut(s) 517, 695
Ppu21I YACGTR 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 694
Psp6I CCWGG 4 cut(s) 21, 85, 685, 893
PspFI CCCAGC 1 cut(s) 1067
PspGI CCWGG 4 cut(s) 21, 85, 685, 893
PspN4I GGNNCC 2 cut(s) 6, 311
PspPI GGNCC 4 cut(s) 4, 16, 398, 1051
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 2 cut(s) 127, 1123
PsuI RGATCY 1 cut(s) 1034
RsaI GTAC 2 cut(s) 787, 1023
RsaNI GTAC 2 cut(s) 786, 1022
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 2 cut(s) 611, 1031
SatI GCNGC 9 cut(s) 252, 477, 480, 483, 574, 768, 1050, 1113, 1257
Sau3AI GATC 3 cut(s) 58, 1034, 1146
Sau96I GGNCC 4 cut(s) 4, 16, 398, 1051
ScaI AGTACT 1 cut(s) 1023
SchI GAGTC 2 cut(s) 518, 695
ScrFI CCNGG 4 cut(s) 23, 87, 687, 895
SduI GDGCHC 3 cut(s) 322, 553, 694
SfaNI GCATC 3 cut(s) 583, 756, 805
SfcI CTRYAG 2 cut(s) 1110, 1260
SinI GGWCC 2 cut(s) 4, 398
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 870, 1030
SmoI CTYRAG 2 cut(s) 870, 1030
SsiI CCGC 7 cut(s) 252, 266, 330, 661, 713, 1049, 1257
SspI AATATT 1 cut(s) 450
SspMI CTAG 2 cut(s) 255, 729
SstI GAGCTC 1 cut(s) 694
StyD4I CCNGG 4 cut(s) 21, 85, 685, 893
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 164, 263, 842, 865
TaiI ACGT 1 cut(s) 712
TaqI TCGA 3 cut(s) 33, 57, 302
TatI WGTACW 2 cut(s) 785, 1021
TauI GCSGC 3 cut(s) 254, 1052, 1259
TfiI GAWTC 3 cut(s) 118, 604, 1153
Tru1I TTAA 2 cut(s) 611, 1031
Tru9I TTAA 2 cut(s) 611, 1031
TscAI CASTG 3 cut(s) 128, 268, 463
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 6 cut(s) 476, 479, 482, 573, 767, 1112
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 5 cut(s) 216, 347, 505, 792, 971
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 3 cut(s) 128, 268, 463
Vha464I CTTAAG 1 cut(s) 1030
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 2 cut(s) 4, 398
XapI RAATTY 3 cut(s) 148, 665, 681
XspI CTAG 2 cut(s) 255, 729
ZrmI AGTACT 1 cut(s) 1023
Zsp2I ATGCAT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.