Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011974

Physical Location & Seq

Genomic Coordinates Forward (+)

16556738 .. 16559034

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGCGGAGTTTCGACGGCGGCGTACTTTGCGCGGCGAGCGGCTCAGAAGGAGAGAGTTCGAATCCTTTACCGTCGTGCCCTTAAGGATACTCTCAATTGGGCTGTTCATCGCCATATCTTCTACCGTGACGCTTCTGATCTGCGTGAGAAGTTCAATGTCAACCAAGATGTGGAGGATGTCGACAGAATCGACAAACTGATTGCTCATGGTGAAGCAGAATACAACAAATGGCGGCACCCTGATCCTTATATCGTTCCATGGGCTCCTGGTGGCTCAAAGTTCTGTAGAAACCCGACTCCGCCTGCTGGGATTGAGATTGTGTACAACTATGGTCTAGAAGACAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005975 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0071704 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

117

Amino Acids

13.62

Weight (kDa)

8.73

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34700
fragaria_vesca	FvH4_2g10430
malus_domestica	MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica	Prupe.8G083900_v2.0.a1
pyrus_communis	pycom05g04620 pycom10g04880
rosa_chinensis	RchiOBHm_Chr6g0267931
rosa_laevigata	RLG00000013967
rosa_multiflora	Rmu_sc0000434.1_g000017
rosa_roxburghii	Rroxscaffold_7G00200320
rosa_rugosa	Rorug06G0035400
rosa_samantha	Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana	Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccBSI	CCGCTC	2 cut(s)	6, 41
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	34
AciI	CCGC	6 cut(s)	6, 20, 34, 41, 235, 302
AclWI	GGATC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	26, 326
AfiI	CCNNNNNNNGG	2 cut(s)	172, 308
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	268
AlwI	GGATC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	4 cut(s)	21, 35, 42, 236
BlsI	GCNGC	4 cut(s)	22, 36, 43, 237
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	239, 267
BmrFI	CCNGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 308
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	172, 308
BseMII	CTCAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	172, 308
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	82, 268
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	139, 244
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	6 cut(s)	6, 20, 34, 41, 235, 302
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	239, 267
BspPI	GGATC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	83
BsrBI	CCGCTC	2 cut(s)	6, 41
BsrGI	TGTACA	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	139, 244
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	74, 128
BstAFI	CTTAAG	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	39, 306
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	142, 247
BstMBI	GATC	2 cut(s)	139, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 38
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	39, 306
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	25, 325
CviAII	CATG	2 cut(s)	209, 261
CviJI	RGCY	4 cut(s)	44, 104, 266, 276
CviKI_1	RGCY	4 cut(s)	44, 104, 266, 276
CviQI	GTAC	2 cut(s)	25, 325
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	141, 246
DpnII	GATC	2 cut(s)	139, 244
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	212, 264
FaiI	YATR	6 cut(s)	117, 210, 252, 262, 333, 352
FatI	CATG	2 cut(s)	208, 260
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	21, 35, 42, 236
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	4 cut(s)	21, 35, 42, 236
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	21, 35, 42, 236
GsaI	CCCAGC	1 cut(s)	312
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	212, 264
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	2 cut(s)	163, 184
HindII	GTYRAC	2 cut(s)	163, 184
HinfI	GANTC	3 cut(s)	63, 189, 298
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	163, 184, 325
Hpy188I	TCNGA	2 cut(s)	48, 139
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	3 cut(s)	163, 184, 325
Hpy99I	CGWCG	2 cut(s)	19, 78
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	74, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 38
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	212, 264
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	139, 244
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	255, 255, 282, 294, 318
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	141, 246
MbiI	CCGCTC	2 cut(s)	6, 41
MboI	GATC	2 cut(s)	139, 244
MboII	GAAGA	2 cut(s)	112, 353
MfeI	CAATTG	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	82, 268
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	29, 38
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	139, 244
NlaIII	CATG	2 cut(s)	212, 264
NlaIV	GGNNCC	2 cut(s)	239, 267
NmuCI	GTSAC	1 cut(s)	128
NspV	TTCGAA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 189
PfeI	GAWTC	2 cut(s)	63, 189
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	22, 36, 43, 237
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	239, 267
RsaI	GTAC	2 cut(s)	26, 326
RsaNI	GTAC	2 cut(s)	25, 325
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	21, 35, 42, 236
Sau3AI	GATC	2 cut(s)	139, 244
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	82, 268
SfcI	CTRYAG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	6 cut(s)	6, 20, 34, 41, 235, 302
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	74, 128
TaqI	TCGA	4 cut(s)	14, 61, 183, 192
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	4 cut(s)	23, 37, 44, 238
TfiI	GAWTC	2 cut(s)	63, 189
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	172
Vha464I	CTTAAG	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.