MD00G1086200.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011974
Physical Location & Seq
Forward (+)
17522803 .. 17526665
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1086200.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGCGGAGTGTCAACAGCAGCGTACGTGGCTCGTCGAGCAGCTCAGAAGGAGAAGGTTCGGATCCTCTACAGGCGAGCCCTCAGAGACACTCTCAACTGGGCCGTTCACCGCCACCTCTTCTACCCAGATGCTGATGCCCTCCGTGAGAGGTTCGAAACCAACAAACATGTGGAAGATCCTGACACCGTTGATAGACTCATAGCGAATGCCGAAGCCACTTACAATAAGTGGCGCCATCCTGATCCTTACATTGTTCCTTGGGCCCCCGGTGGTTCAAAGTTTCACCGGAATCCTACTCCACCGGCTGGGATTGAGATAGTATACGACTATGGAAAAGAGGATAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

118

Amino Acids

13.55

Weight (kDa)

8.02

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 20 - 72 1.7e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34700
fragaria_vesca FvH4_2g10430
malus_domestica MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica Prupe.8G083900_v2.0.a1
pyrus_communis pycom05g04620 pycom10g04880
rosa_chinensis RchiOBHm_Chr6g0267931
rosa_laevigata RLG00000013967
rosa_multiflora Rmu_sc0000434.1_g000017
rosa_roxburghii Rroxscaffold_7G00200320
rosa_rugosa Rorug06G0035400
rosa_samantha Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 324
AciI CCGC 2 cut(s) 6, 112
AclWI GGATC 4 cut(s) 58, 71, 173, 239
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 279
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 4 cut(s) 58, 71, 173, 239
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 102, 264
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 20, 41
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 102, 264, 265
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 101, 278
AsuII TTCGAA 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 268
BamHI GGATCC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 82, 268
BbvI GCAGC 2 cut(s) 32, 53
BccI CCATC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 2 cut(s) 21, 42
BlsI GCNGC 2 cut(s) 22, 43
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 102, 264, 265
BmiI GGNNCC 4 cut(s) 65, 236, 266, 267
BmrFI CCNGG 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 121, 127
BmuI ACTGGG 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 260, 268
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 260, 268
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 59, 97
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 32, 53
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 2 cut(s) 104, 266
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 270, 289, 305
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 104, 266
Bsp119I TTCGAA 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 82, 268
Bsp143I GATC 3 cut(s) 63, 178, 244
BspACI CCGC 2 cut(s) 6, 112
BspANI GGCC 2 cut(s) 104, 266
BspCNI CTCAG 2 cut(s) 58, 96
BspLI GGNNCC 4 cut(s) 65, 236, 266, 267
BspPI GGATC 4 cut(s) 58, 71, 173, 239
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 234
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 260, 268
BssMI GATC 3 cut(s) 63, 178, 244
BssNAI GTATAC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 260
Bst1107I GTATAC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 45, 83
BstF5I GGATG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 3 cut(s) 66, 181, 247
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 63, 178, 244
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 32, 53
BstX2I RGATCY 2 cut(s) 63, 178
BstYI RGATCY 2 cut(s) 63, 178
BstZ17I GTATAC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 104, 266
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 102, 264, 265
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 170
CviJI RGCY 7 cut(s) 32, 44, 80, 104, 218, 266, 308
CviKI_1 RGCY 7 cut(s) 32, 44, 80, 104, 218, 266, 308
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 45, 83
DinI GGCGCC 1 cut(s) 236
DpnI GATC 3 cut(s) 65, 180, 246
DpnII GATC 3 cut(s) 63, 178, 244
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 2 cut(s) 82, 268
EcoO109I RGGNCCY 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 2 cut(s) 82, 268
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 173
FaiI YATR 4 cut(s) 171, 203, 325, 333
FatI CATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 21, 42
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 2 cut(s) 82, 268
Fsp4HI GCNGC 2 cut(s) 21, 42
GlaI GCGC 1 cut(s) 236
GluI GCNGC 2 cut(s) 21, 42
GsaI CCCAGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 104, 266
HapII CCGG 3 cut(s) 270, 289, 305
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 198, 292
HpaII CCGG 3 cut(s) 270, 289, 305
HphI GGTGA 2 cut(s) 101, 278
Hpy166II GTNNAC 3 cut(s) 15, 109, 325
Hpy188I TCNGA 3 cut(s) 48, 63, 86
Hpy188III TCNNGA 2 cut(s) 182, 242
Hpy8I GTNNAC 3 cut(s) 15, 109, 325
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 43, 49
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 2 cut(s) 45, 83
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 1 cut(s) 235
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 63, 178, 244
LpnPI CCDG 9 cut(s) 58, 85, 141, 195, 255, 283, 294, 302, 318
Lsp1109I GCAGC 2 cut(s) 32, 53
LweI GCATC 2 cut(s) 121, 127
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 65, 180, 246
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 63, 178, 244
MboII GAAGA 2 cut(s) 112, 188
MflI RGATCY 2 cut(s) 63, 178
MhlI GDGCHC 2 cut(s) 82, 268
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 6 cut(s) 77, 92, 128, 144, 152, 334
MspI CCGG 3 cut(s) 270, 289, 305
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 63, 178, 244
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 4 cut(s) 65, 236, 266, 267
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 156
PciI ACATGT 1 cut(s) 169
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 292
Pfl23II CGTACG 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 2 cut(s) 22, 43
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 28
PscI ACATGT 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 308
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 65, 236, 266, 267
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 102, 264, 265
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 63, 178
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 2 cut(s) 21, 42
Sau3AI GATC 3 cut(s) 63, 178, 244
Sau96I GGNCC 3 cut(s) 102, 264, 265
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 2 cut(s) 82, 268
SetI ASST 5 cut(s) 30, 46, 60, 120, 155
SfaNI GCATC 2 cut(s) 121, 127
SfcI CTRYAG 1 cut(s) 70
SfoI GGCGCC 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 156
SsiI CCGC 2 cut(s) 6, 112
SspDI GGCGCC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 37, 156
TfiI GAWTC 1 cut(s) 292
TseI GCWGC 2 cut(s) 20, 41
TspGWI ACGGA 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.