FvH4_2g10430

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011974
Physical Location & Seq
Forward (+)
9277045 .. 9281267
4223 bp
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UTR
Exon/CDS
Intron
FvH4_2g10430.t3

Sequence Viewer

Length: 354 bp
ATGAGCGGAGTTTCAACGGCGGCGTACATAGCTCGTCGGGCTGCCCAGAAGGAGCGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTCCACCGCCACCTCTTCTACCGAGATGCTGATGCTCTGCGCGAGAGGTTCGAGACCAACAAGCACGTGGAAGATCTTGACACAATCGACAGGCTCATAACTAATGCTGAAGCTACCTACAATAAGTGGCGCCACCCTGACCCTTATGTTGTTCCCTGGGCTCCTGGTGGTTCAAAGTTTCATCGGAATCCGACTCCACCTTCTGGGATTGAGATAGTATATGACTATGGCCGAGAAGATAATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

118

Amino Acids

13.67

Weight (kDa)

9.3

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34700
fragaria_vesca FvH4_2g10430
malus_domestica MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica Prupe.8G083900_v2.0.a1
pyrus_communis pycom05g04620 pycom10g04880
rosa_chinensis RchiOBHm_Chr6g0267931
rosa_laevigata RLG00000013967
rosa_multiflora Rmu_sc0000434.1_g000017
rosa_roxburghii Rroxscaffold_7G00200320
rosa_rugosa Rorug06G0035400
rosa_samantha Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 308
AccBSI CCGCTC 2 cut(s) 6, 55
AccII CGCG 1 cut(s) 147
AciI CCGC 5 cut(s) 6, 20, 55, 73, 112
AclWI GGATC 2 cut(s) 58, 71
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 234
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 15, 279
AjnI CCWGG 2 cut(s) 260, 268
AluBI AGCT 2 cut(s) 32, 218
AluI AGCT 2 cut(s) 32, 218
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 58, 71
AoxI GGCC 2 cut(s) 102, 334
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 147, 237
AspS9I GGNCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 82
BamHI GGATCC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 172
BbvI GCAGC 1 cut(s) 28
BceAI ACGGC 3 cut(s) 33, 60, 89
BciT130I CCWGG 2 cut(s) 262, 270
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 238
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 21, 42
BlsI GCNGC 2 cut(s) 22, 43
Bme1390I CCNGG 2 cut(s) 262, 270
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 65, 236, 267
BmrFI CCNGG 2 cut(s) 262, 270
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 121, 127
BmuI ACTGGG 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 260, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 262, 270
BseDI CCNNGG 2 cut(s) 260, 261
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 104, 336
BshNI GGYRCC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 2 cut(s) 104, 336
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 82, 268
Bsp143I GATC 2 cut(s) 63, 178
BspACI CCGC 5 cut(s) 6, 20, 55, 73, 112
BspANI GGCC 2 cut(s) 104, 336
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 65, 236, 267
BspPI GGATC 2 cut(s) 58, 71
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 2 cut(s) 6, 55
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 260, 261
BssMI GATC 2 cut(s) 63, 178
BssNI GRCGYC 1 cut(s) 235
Bst2UI CCWGG 2 cut(s) 262, 270
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 172
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 147, 237
BstKTI GATC 2 cut(s) 66, 181
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 63, 178
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNI CCWGG 2 cut(s) 262, 270
BstSCI CCNGG 2 cut(s) 260, 268
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 63, 178
BstYI RGATCY 2 cut(s) 63, 178
BsuRI GGCC 2 cut(s) 104, 336
CfoI GCGC 2 cut(s) 147, 237
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 7 cut(s) 32, 41, 104, 199, 218, 266, 336
CviKI_1 RGCY 7 cut(s) 32, 41, 104, 199, 218, 266, 336
CviQI GTAC 1 cut(s) 25
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 65, 180
DpnII GATC 2 cut(s) 63, 178
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 260, 268
EcoT38I GRGCYC 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaiI YATR 6 cut(s) 29, 203, 252, 325, 327, 333
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 21, 42
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 21, 42
FspBI CTAG 1 cut(s) 352
GlaI GCGC 2 cut(s) 146, 236
GluI GCNGC 2 cut(s) 21, 42
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 104, 336
HhaI GCGC 2 cut(s) 147, 237
Hin1I GRCGYC 1 cut(s) 235
Hin6I GCGC 2 cut(s) 145, 235
HinP1I GCGC 2 cut(s) 145, 235
HinfI GANTC 2 cut(s) 292, 298
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 63, 291, 297
Hpy188III TCNNGA 2 cut(s) 157, 182
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 43, 315
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 235
HspAI GCGC 2 cut(s) 145, 235
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 63, 178
LmnI GCTCC 2 cut(s) 52, 271
LpnPI CCDG 9 cut(s) 59, 85, 181, 247, 255, 255, 274, 282, 294
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 2 cut(s) 121, 127
MaeI CTAG 1 cut(s) 352
MaeII ACGT 1 cut(s) 171
MalI GATC 2 cut(s) 65, 180
MbiI CCGCTC 2 cut(s) 6, 55
MboI GATC 2 cut(s) 63, 178
MboII GAAGA 3 cut(s) 112, 188, 353
MflI RGATCY 2 cut(s) 63, 178
MhlI GDGCHC 2 cut(s) 82, 268
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 4 cut(s) 77, 92, 128, 144
MspR9I CCNGG 2 cut(s) 262, 270
MvaI CCWGG 2 cut(s) 262, 270
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NarI GGCGCC 1 cut(s) 235
NdeII GATC 2 cut(s) 63, 178
NlaIV GGNNCC 3 cut(s) 65, 236, 267
PasI CCCWGGG 1 cut(s) 261
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 2 cut(s) 22, 43
PleI GAGTC 1 cut(s) 292
PluTI GGCGCC 1 cut(s) 238
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 260, 268
PspCI CACGTG 1 cut(s) 172
PspGI CCWGG 2 cut(s) 260, 268
PspN4I GGNNCC 3 cut(s) 65, 236, 267
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 2 cut(s) 63, 178
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 2 cut(s) 21, 42
Sau3AI GATC 2 cut(s) 63, 178
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 2 cut(s) 262, 270
SduI GDGCHC 2 cut(s) 82, 268
SetI ASST 7 cut(s) 34, 120, 155, 174, 220, 224, 307
SfaNI GCATC 2 cut(s) 121, 127
SfoI GGCGCC 1 cut(s) 236
SsiI CCGC 5 cut(s) 6, 20, 55, 73, 112
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 260, 268
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 156, 192
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 292
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.