pycom05g04620

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011974
Physical Location & Seq
Reverse (-)
5431707 .. 5433757
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04620.4

Sequence Viewer

Length: 354 bp
ATGAGCGGAGTGTCAACAGCAGCGTACGTAGCTCGTCGAGCAGCTCAGAAGGAGAAGGTTCGGATCCTCTACAGGCGAGCGCTCAGAGACACTCTCAACTGGGCCGTTCACCGCCACCTCTTCTACCCAGATGCTGATGCCCTCCGCGGGAGGTTCGAAACCAACAAGCATGTGGAAGATCCTGACACCGTTGATAGACTCATAGCGAATGCCGAAGCCACTTACAATAAGTGGCGCCACCCCGATCCTTACGTTGTTCCTTGGGCCCCCGGTGGTTCAAAGTTTCACCGGAATCCTACTCCACCGGCTGGGATTGAGATAGTATACGACTATGGAAAAGAGGATAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

8.92

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34700
fragaria_vesca FvH4_2g10430
malus_domestica MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica Prupe.8G083900_v2.0.a1
pyrus_communis pycom05g04620 pycom10g04880
rosa_chinensis RchiOBHm_Chr6g0267931
rosa_laevigata RLG00000013967
rosa_multiflora Rmu_sc0000434.1_g000017
rosa_roxburghii Rroxscaffold_7G00200320
rosa_rugosa Rorug06G0035400
rosa_samantha Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 147
AciI CCGC 4 cut(s) 6, 112, 145, 147
AclWI GGATC 4 cut(s) 58, 71, 173, 239
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 26
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 147, 308
AgsI TTSAA 1 cut(s) 279
AluBI AGCT 2 cut(s) 32, 44
AluI AGCT 2 cut(s) 32, 44
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 4 cut(s) 58, 71, 173, 239
AlwNI CAGNNNCTG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 2 cut(s) 102, 264
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 20, 41
AspLEI GCGC 2 cut(s) 82, 237
AspS9I GGNCC 3 cut(s) 102, 264, 265
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 101, 278
AsuII TTCGAA 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 268
BamHI GGATCC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 32, 53
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 2 cut(s) 83, 238
BisI GCNGC 2 cut(s) 21, 42
BlsI GCNGC 2 cut(s) 22, 43
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 102, 264, 265
BmiI GGNNCC 4 cut(s) 65, 236, 266, 267
BmrFI CCNGG 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 121, 127
BmuI ACTGGG 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 145, 260, 268
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 308
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 145, 260, 268
BseLI CCNNNNNNNGG 2 cut(s) 147, 308
BseMII CTCAG 2 cut(s) 59, 97
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 32, 53
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 104, 266
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 270, 289, 305
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 147, 308
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 104, 266
Bsp119I TTCGAA 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 63, 178, 244
BspACI CCGC 4 cut(s) 6, 112, 145, 147
BspANI GGCC 2 cut(s) 104, 266
BspCNI CTCAG 2 cut(s) 58, 96
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 4 cut(s) 65, 236, 266, 267
BspPI GGATC 4 cut(s) 58, 71, 173, 239
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 234
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 145, 260, 268
BssMI GATC 3 cut(s) 63, 178, 244
BssNAI GTATAC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 260
Bst1107I GTATAC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 45, 83
BstDSI CCRYGG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 2 cut(s) 83, 238
BstHHI GCGC 2 cut(s) 82, 237
BstKTI GATC 3 cut(s) 66, 181, 247
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 63, 178, 244
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 268
BstSNI TACGTA 1 cut(s) 28
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 32, 53
BstX2I RGATCY 2 cut(s) 63, 178
BstYI RGATCY 2 cut(s) 63, 178
BstZ17I GTATAC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 104, 266
BtgI CCRYGG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 2 cut(s) 82, 237
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 102, 264, 265
Cfr42I CCGCGG 1 cut(s) 148
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 170
CviJI RGCY 6 cut(s) 32, 44, 104, 218, 266, 308
CviKI_1 RGCY 6 cut(s) 32, 44, 104, 218, 266, 308
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 45, 83
DinI GGCGCC 1 cut(s) 236
DpnI GATC 3 cut(s) 65, 180, 246
DpnII GATC 3 cut(s) 63, 178, 244
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 173
FaiI YATR 4 cut(s) 171, 203, 325, 333
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 140
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 21, 42
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 21, 42
GlaI GCGC 2 cut(s) 81, 236
GluI GCNGC 2 cut(s) 21, 42
GsaI CCCAGC 1 cut(s) 312
HaeII RGCGCY 2 cut(s) 83, 238
HaeIII GGCC 2 cut(s) 104, 266
HapII CCGG 3 cut(s) 270, 289, 305
HhaI GCGC 2 cut(s) 82, 237
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 2 cut(s) 80, 235
HinP1I GCGC 2 cut(s) 80, 235
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 198, 292
HpaII CCGG 3 cut(s) 270, 289, 305
HphI GGTGA 2 cut(s) 101, 278
Hpy166II GTNNAC 3 cut(s) 15, 109, 325
Hpy188I TCNGA 3 cut(s) 48, 63, 86
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 3 cut(s) 15, 109, 325
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 43, 49
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 27, 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 2 cut(s) 45, 83
HpySE526I ACGT 2 cut(s) 27, 252
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 2 cut(s) 80, 235
KasI GGCGCC 1 cut(s) 234
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 3 cut(s) 63, 178, 244
LpnPI CCDG 8 cut(s) 58, 85, 141, 195, 283, 294, 302, 318
Lsp1109I GCAGC 2 cut(s) 32, 53
LweI GCATC 2 cut(s) 121, 127
MaeII ACGT 2 cut(s) 27, 252
MalI GATC 3 cut(s) 65, 180, 246
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 63, 178, 244
MboII GAAGA 2 cut(s) 112, 188
MflI RGATCY 2 cut(s) 63, 178
MhlI GDGCHC 1 cut(s) 268
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 5 cut(s) 77, 128, 144, 152, 334
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 3 cut(s) 270, 289, 305
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 214
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 63, 178, 244
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 4 cut(s) 65, 236, 266, 267
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 156
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 292
Pfl23II CGTACG 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 2 cut(s) 22, 43
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 308
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 65, 236, 266, 267
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 102, 264, 265
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 63, 178
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 148
SatI GCNGC 2 cut(s) 21, 42
Sau3AI GATC 3 cut(s) 63, 178, 244
Sau96I GGNCC 3 cut(s) 102, 264, 265
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 268
SetI ASST 7 cut(s) 30, 34, 46, 60, 120, 155, 255
SfaNI GCATC 2 cut(s) 121, 127
SfcI CTRYAG 1 cut(s) 70
SfoI GGCGCC 1 cut(s) 236
Sfr303I CCGCGG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 156
SgrBI CCGCGG 1 cut(s) 148
SnaBI TACGTA 1 cut(s) 28
SsiI CCGC 4 cut(s) 6, 112, 145, 147
SspDI GGCGCC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 30, 255
TaqI TCGA 2 cut(s) 37, 156
TfiI GAWTC 1 cut(s) 292
TseI GCWGC 2 cut(s) 20, 41
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.