Rorug06G0035400

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011974
Physical Location & Seq
Forward (+)
4408102 .. 4408614
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0035400.1

Sequence Viewer

Length: 513 bp
ATGGGGCTGATCACAAAACTTTTAGTAGCCACATGCTCCCTAGCTTTCATCCTAGCATCTCATGCTGCCCTAGCTCGTAAGGTCGGCAAGGGGATCGACGACCCTAGTGGTCACCAAGGCTTTGTTGACGAGCACAATGCTGCTAGAGCGGCGGTTGGTGTTGGTCCAATCACTTGGAACTACACCATAGCTGCCTACGCTCAACACTACGCCAACACTCGAATCCACGGCTGCGACATGGTGCATTCCGAGGGGCCTTACGGCGAGAACTTGGCCGAGGGCTACGGTGAGATGACTGGCGCTCAAGCAGTGAAGTTTTGGGTGACTGAGAAGCCCAACTACGACTACACCTCCAACAAGTGTGTTGGGGATGAATGCGGGCATTATACTCAGGTGGTTTGGCGCAATTCGGTTCATCTGGGATGTGCAAGAGCCAAGTGCACCAATGGGTGGGTGTTTGTGATCTGCAGCTATGATCCTCCTGGGAACTATGAGGATGAACGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

170

Amino Acids

18.58

Weight (kDa)

6.03

Isoelectric Point (pI)

20.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 158 2.2e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34700
fragaria_vesca FvH4_2g10430
malus_domestica MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica Prupe.8G083900_v2.0.a1
pyrus_communis pycom05g04620 pycom10g04880
rosa_chinensis RchiOBHm_Chr6g0267931
rosa_laevigata RLG00000013967
rosa_multiflora Rmu_sc0000434.1_g000017
rosa_roxburghii Rroxscaffold_7G00200320
rosa_rugosa Rorug06G0035400
rosa_samantha Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 450
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 3 cut(s) 149, 152, 378
AclWI GGATC 2 cut(s) 101, 470
AcoI YGGCCR 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 450
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 4 cut(s) 44, 74, 191, 471
AluI AGCT 4 cut(s) 44, 74, 191, 471
Alw21I GWGCWC 2 cut(s) 135, 443
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 2 cut(s) 101, 470
AoxI GGCC 2 cut(s) 254, 273
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 5 cut(s) 65, 140, 191, 231, 468
AspLEI GCGC 2 cut(s) 302, 405
AspS9I GGNCC 2 cut(s) 164, 254
AsuHPI GGTGA 3 cut(s) 104, 299, 334
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
Bbv12I GWGCWC 2 cut(s) 135, 443
BbvI GCAGC 5 cut(s) 52, 127, 178, 218, 480
BceAI ACGGC 2 cut(s) 244, 277
BcgI CGANNNNNNTGC 4 cut(s) 76, 110, 119, 153
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 9
BfaI CTAG 6 cut(s) 41, 53, 71, 105, 144, 511
BfmI CTRYAG 1 cut(s) 466
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 6 cut(s) 66, 141, 150, 192, 232, 469
BlsI GCNGC 6 cut(s) 67, 142, 151, 193, 233, 470
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 164, 254
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 288
BsaJI CCNNGG 5 cut(s) 115, 226, 249, 276, 482
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 5 cut(s) 115, 226, 249, 276, 482
BseGI GGATG 4 cut(s) 48, 376, 428, 502
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 318, 404
BseNI ACTGG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 5 cut(s) 52, 127, 178, 218, 480
BshFI GGCC 2 cut(s) 256, 275
BsiHKAI GWGCWC 2 cut(s) 135, 443
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 2 cut(s) 244, 380
BsnI GGCC 2 cut(s) 256, 275
Bsp1286I GDGCHC 2 cut(s) 135, 443
Bsp143I GATC 4 cut(s) 9, 93, 462, 475
BspACI CCGC 3 cut(s) 149, 152, 378
BspANI GGCC 2 cut(s) 256, 275
BspCNI CTCAG 2 cut(s) 319, 403
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 101, 470
BsrBI CCGCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 5 cut(s) 115, 226, 249, 276, 482
BssMI GATC 4 cut(s) 9, 93, 462, 475
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 327, 390
BstDSI CCRYGG 1 cut(s) 226
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 4 cut(s) 48, 376, 428, 502
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 302, 405
BstKTI GATC 4 cut(s) 12, 96, 465, 478
BstMBI GATC 4 cut(s) 9, 93, 462, 475
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 146, 149, 197
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 5 cut(s) 52, 127, 178, 218, 480
BstXI CCANNNNNNTGG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 256, 275
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 4 cut(s) 48, 376, 428, 502
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 380
CfoI GCGC 2 cut(s) 302, 405
Cfr13I GGNCC 2 cut(s) 164, 254
CviAII CATG 3 cut(s) 33, 62, 238
DdeI CTNAG 2 cut(s) 327, 390
DpnI GATC 4 cut(s) 11, 95, 464, 477
DpnII GATC 4 cut(s) 9, 93, 462, 475
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 36, 65, 241
FaiI YATR 7 cut(s) 34, 63, 188, 239, 387, 474, 492
FaqI GGGAC 1 cut(s) 489
FatI CATG 3 cut(s) 32, 61, 237
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 66, 141, 150, 192, 232, 469
FokI GGATG 4 cut(s) 35, 383, 435, 509
Fsp4HI GCNGC 6 cut(s) 66, 141, 150, 192, 232, 469
FspBI CTAG 6 cut(s) 41, 53, 71, 105, 144, 511
GlaI GCGC 2 cut(s) 301, 404
GluI GCNGC 6 cut(s) 66, 141, 150, 192, 232, 469
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 2 cut(s) 256, 275
HhaI GCGC 2 cut(s) 302, 405
Hin1II CATG 3 cut(s) 36, 65, 241
Hin6I GCGC 2 cut(s) 300, 403
HinP1I GCGC 2 cut(s) 300, 403
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 222
HphI GGTGA 3 cut(s) 104, 299, 334
Hpy166II GTNNAC 2 cut(s) 127, 441
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 2 cut(s) 127, 441
Hpy99I CGWCG 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 4 cut(s) 244, 428, 441, 468
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 146, 149, 197
HpyF3I CTNAG 2 cut(s) 327, 390
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 3 cut(s) 36, 65, 241
HspAI GCGC 2 cut(s) 300, 403
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 4 cut(s) 9, 93, 462, 475
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 282, 377, 404, 468, 495
Lsp1109I GCAGC 5 cut(s) 52, 127, 178, 218, 480
LweI GCATC 1 cut(s) 65
MaeI CTAG 6 cut(s) 41, 53, 71, 105, 144, 511
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 110, 322
MalI GATC 4 cut(s) 11, 95, 464, 477
MbiI CCGCTC 1 cut(s) 149
MboI GATC 4 cut(s) 9, 93, 462, 475
MhlI GDGCHC 2 cut(s) 135, 443
MluCI AATT 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 5 cut(s) 244, 271, 361, 487, 489
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 2 cut(s) 244, 380
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 146, 149, 197
NdeII GATC 4 cut(s) 9, 93, 462, 475
NlaIII CATG 3 cut(s) 36, 65, 241
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 110, 322
NspI RCATGY 1 cut(s) 36
PctI GAATGC 2 cut(s) 244, 380
PfeI GAWTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 6 cut(s) 67, 142, 151, 193, 233, 470
Psp6I CCWGG 1 cut(s) 481
PspEI GGTNACC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 164, 254
PstI CTGCAG 1 cut(s) 470
SatI GCNGC 6 cut(s) 66, 141, 150, 192, 232, 469
Sau3AI GATC 4 cut(s) 9, 93, 462, 475
Sau96I GGNCC 2 cut(s) 164, 254
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 135, 443
SetI ASST 8 cut(s) 46, 76, 84, 193, 353, 396, 473, 505
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 406
SsiI CCGC 3 cut(s) 149, 152, 378
SspMI CTAG 6 cut(s) 41, 53, 71, 105, 144, 511
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 96, 220
TasI AATT 1 cut(s) 406
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 110, 322
TseI GCWGC 5 cut(s) 65, 140, 191, 231, 468
Tsp45I GTSAC 2 cut(s) 110, 322
TspDTI ATGAA 4 cut(s) 37, 387, 404, 513
TspRI CASTG 1 cut(s) 315
Van91I CCANNNNNTGG 1 cut(s) 450
VneI GTGCAC 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 36
XspI CTAG 6 cut(s) 41, 53, 71, 105, 144, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.