MD00G1117500.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011974
Physical Location & Seq
Forward (+)
24903889 .. 24904242
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1117500.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGCAGAGTTTCAACAGCAGCGCACGTAGCTCGTCGAGCAGCTCAGAAGGAGAAGGTTCAGATCCTCTACAGGAAAGCCCTCAGAGACACTCTCAACTGCGCCGTCCACCGCCACCTCTTCTACCCAGATGCTGATGCCCCCCGCGAGAGGTTTGAAACCAACAAGCATGTGGAAGATCCTGACACCATTGATAGACTCATAGCGAATGCCGAAGCCACTTACAATATGTGGCGCCATCCTGATCTTTACATTGTTCCTTGGGCCTCTGGTGGTTCTAAGTTTCACCGAAATCCTATTCCACCTGCTGGGATTGAGATAGTATACGACTATGGAAAAGAGGATAACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

118

Amino Acids

13.5

Weight (kDa)

7.02

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34700
fragaria_vesca FvH4_2g10430
malus_domestica MD00G1086200.v1.1 MD00G1117500.v1.1
prunus_persica Prupe.8G083900_v2.0.a1
pyrus_communis pycom05g04620 pycom10g04880
rosa_chinensis RchiOBHm_Chr6g0267931
rosa_laevigata RLG00000013967
rosa_multiflora Rmu_sc0000434.1_g000017
rosa_roxburghii Rroxscaffold_7G00200320
rosa_rugosa Rorug06G0035400
rosa_samantha Rh6AG157500 Rh6BG159500 Rh6CG157200 Rh6DG145100
rosa_wichuraiana Rw0G019610 Rw6G013680 Rw6G013700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 308
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 112, 145
AclWI GGATC 2 cut(s) 58, 173
AcyI GRCGYC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 150, 308
AgsI TTSAA 2 cut(s) 15, 158
AluBI AGCT 2 cut(s) 32, 44
AluI AGCT 2 cut(s) 32, 44
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 58, 173
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 20, 41
AspLEI GCGC 3 cut(s) 25, 104, 237
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 278
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 32, 53
BccI CCATC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 21, 42
BlsI GCNGC 2 cut(s) 22, 43
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 2 cut(s) 121, 127
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 308
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 150, 308
BseMII CTCAG 2 cut(s) 59, 97
BseXI GCAGC 2 cut(s) 32, 53
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 150, 308
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 63, 178, 244
BspACI CCGC 2 cut(s) 112, 145
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 2 cut(s) 58, 96
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 2 cut(s) 58, 173
BspT107I GGYRCC 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 3 cut(s) 63, 178, 244
BssNAI GTATAC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 260
Bst1107I GTATAC 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 45, 83, 279
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 25, 104, 237
BstKTI GATC 3 cut(s) 66, 181, 247
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 63, 178, 244
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 32, 53
BstX2I RGATCY 2 cut(s) 63, 178
BstYI RGATCY 2 cut(s) 63, 178
BstZ17I GTATAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 3 cut(s) 25, 104, 237
Cfr13I GGNCC 1 cut(s) 264
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 32, 44, 80, 218, 266
CviKI_1 RGCY 5 cut(s) 32, 44, 80, 218, 266
DdeI CTNAG 3 cut(s) 45, 83, 279
DinI GGCGCC 1 cut(s) 236
DpnI GATC 3 cut(s) 65, 180, 246
DpnII GATC 3 cut(s) 63, 178, 244
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 260
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 173
FaiI YATR 5 cut(s) 171, 203, 230, 325, 333
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 21, 42
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 21, 42
GlaI GCGC 3 cut(s) 24, 103, 236
GluI GCNGC 2 cut(s) 21, 42
GsaI CCCAGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 266
HhaI GCGC 3 cut(s) 25, 104, 237
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 3 cut(s) 23, 102, 235
HinP1I GCGC 3 cut(s) 23, 102, 235
HinfI GANTC 1 cut(s) 198
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 109, 325
Hpy188I TCNGA 3 cut(s) 48, 63, 86
Hpy188III TCNNGA 2 cut(s) 182, 242
Hpy8I GTNNAC 2 cut(s) 109, 325
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 43, 49
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 3 cut(s) 45, 83, 279
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 3 cut(s) 23, 102, 235
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 63, 178, 244
LpnPI CCDG 7 cut(s) 58, 141, 195, 255, 255, 294, 318
Lsp1109I GCAGC 2 cut(s) 32, 53
LweI GCATC 2 cut(s) 121, 127
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 65, 180, 246
MboI GATC 3 cut(s) 63, 178, 244
MboII GAAGA 2 cut(s) 112, 188
MflI RGATCY 2 cut(s) 63, 178
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 6 cut(s) 77, 92, 128, 144, 277, 334
Mva1269I GAATGC 1 cut(s) 214
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NarI GGCGCC 1 cut(s) 235
NdeII GATC 3 cut(s) 63, 178, 244
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 236
NspI RCATGY 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 313
PctI GAATGC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 2 cut(s) 22, 43
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 63, 178
SatI GCNGC 2 cut(s) 21, 42
Sau3AI GATC 3 cut(s) 63, 178, 244
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 192
SetI ASST 7 cut(s) 30, 34, 46, 60, 120, 155, 307
SfaNI GCATC 2 cut(s) 121, 127
SfcI CTRYAG 1 cut(s) 70
SfoI GGCGCC 1 cut(s) 236
SsiI CCGC 2 cut(s) 112, 145
SspDI GGCGCC 1 cut(s) 234
StyI CCWWGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 37
TseI GCWGC 2 cut(s) 20, 41
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.