AT4G34850

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16608204 .. 16609829
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34850.1

Sequence Viewer

Length: 1179 bp
ATGGGAAGCATCGATGCTGCAGTGTTGGGTTCAGAGAAGAAATCAAACCCGGGAAAAGCCACAATTCTTGCTCTGGGAAAAGCCTTTCCTCACCAGCTAGTAATGCAAGAGTACTTAGTCGATGGCTACTTCAAAACCACCAAGTGTGATGACCCTGAACTCAAACAGAAACTTACTCGTCTCTGCAAGACAACAACGGTGAAGACAAGGTATGTTGTGATGTCAGAGGAGATTCTCAAGAAGTACCCAGAACTTGCCATTGAAGGAGGATCCACAGTGACGCAGCGTCTAGACATCTGCAACGATGCAGTGACCGAGATGGCAGTAGAAGCCTCCAGAGCCTGCATCAAGAACTGGGGACGTTCTATTTCCGACATAACTCACGTTGTCTATGTCTCCTCAAGCGAAGCTCGTCTTCCTGGTGGGGACTTGTACCTGGCCAAGGGGCTTGGACTCAGTCCTGACACACACCGTGTTCTGCTCTACTTTGTTGGCTGTTCTGGTGGCGTTGCAGGTCTCCGTGTAGCCAAAGACATCGCCGAGAATAATCCGGGCAGTAGAGTTTTGCTTGCCACGTCTGAGACAACCATCATTGGGTTCAAGCCCCCAAGTGTGGATAGACCGTATGATCTTGTTGGGGTCGCGTTGTTTGGTGATGGAGCCGGAGCTATGATCATTGGATCCGATCCAGACCCGATCTGCGAGAAGCCTCTCTTTGAGCTTCATACTGCAATACAGAACTTTTTACCTGAAACAGAGAAGACGATAGATGGAAGGCTAACAGAACAAGGGATAAACTTCAAGCTATCGAGAGAGCTTCCACAGATAATAGAAGACAATGTGGAGAATTTCTGCAAGAAGCTAATAGGAAAAGCGGGACTGGCTCATAAGAACTATAACCAGATGTTCTGGGCGGTTCATCCAGGTGGACCAGCCATCTTGAACCGGATTGAAAAGCGGCTTAACCTGTCGCCTGAGAAGCTGAGTCCAAGCAGAAGAGCTCTCATGGACTATGGCAATGCGAGCAGCAATTCAATTGTTTATGTGCTGGAGTATATGTTGGAGGAGAGCAAGAAAGTGAGGAACATGAATGAAGAAGAAAACGAGTGGGGTCTGATTCTTGCTTTTGGACCTGGTGTTACATTTGAAGGCATTATCGCTCGAAACCTTGATGTCTGA

Protein Analysis

392

Amino Acids

42.98

Weight (kDa)

5.98

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 12 - 230 8e-100 Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III PF08545 165 - 229 2.6e-06 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C PF02797 240 - 389 8.2e-61 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34850 AT4G34850
fragaria_vesca FvH4_2g02110
malus_domestica MD05G1115000.v1.1
prunus_persica Prupe.8G159600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245621
rosa_laevigata RLG00000015299
rosa_multiflora Rmu_sc0001341.1_g000003
rosa_roxburghii Rroxscaffold_7G00215220
rosa_rugosa Rorug05G0515100.1
rosa_samantha Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana Rw6G002550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccII CGCG 1 cut(s) 644
AciI CCGC 3 cut(s) 875, 914, 958
AclWI GGATC 5 cut(s) 264, 277, 675, 680, 688
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 1 cut(s) 847
AdeI CACNNNGTG 2 cut(s) 144, 473
AfaI GTAC 3 cut(s) 113, 245, 434
AfiI CCNNNNNNNGG 3 cut(s) 442, 594, 613
AgsI TTSAA 8 cut(s) 133, 263, 601, 802, 943, 953, 1035, 1148
AhdI GACNNNNNGTC 1 cut(s) 285
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 4 cut(s) 418, 435, 922, 1132
AluBI AGCT 9 cut(s) 97, 410, 668, 721, 805, 817, 862, 982, 1001
AluI AGCT 9 cut(s) 97, 410, 668, 721, 805, 817, 862, 982, 1001
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 4 cut(s) 185, 400, 521, 575
AlwI GGATC 5 cut(s) 264, 277, 675, 680, 688
AlwNI CAGNNNCTG 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 3 cut(s) 17, 283, 1026
ApoI RAATTY 1 cut(s) 847
AspS9I GGNCC 2 cut(s) 929, 1130
AsuC2I CCSGG 3 cut(s) 50, 51, 552
AsuHPI GGTGA 3 cut(s) 83, 211, 665
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 2 cut(s) 929, 1130
BalI TGGCCA 1 cut(s) 440
BamHI GGATCC 2 cut(s) 269, 680
BanII GRGCYC 1 cut(s) 1003
BbsI GAAGAC 4 cut(s) 209, 407, 767, 840
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 3 cut(s) 4, 295, 1038
BccI CCATC 6 cut(s) 116, 313, 596, 650, 764, 944
BciT130I CCWGG 4 cut(s) 420, 437, 924, 1134
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 3 cut(s) 50, 51, 552
BcoDI GTCTC 4 cut(s) 185, 400, 521, 575
BfaI CTAG 2 cut(s) 98, 290
BfmI CTRYAG 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 4 cut(s) 18, 284, 959, 1027
BlsI GCNGC 4 cut(s) 19, 285, 960, 1028
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 7 cut(s) 50, 51, 420, 437, 552, 924, 1134
Bme18I GGWCC 2 cut(s) 929, 1130
BmeRI GACNNNNNGTC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 2 cut(s) 929, 1130
BmiI GGNNCC 3 cut(s) 271, 661, 682
BmrFI CCNGG 7 cut(s) 50, 51, 420, 437, 552, 924, 1134
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 4 cut(s) 4, 18, 295, 354
BmuI ACTGGG 1 cut(s) 364
BpiI GAAGAC 4 cut(s) 209, 407, 767, 840
BpmI CTGGAG 2 cut(s) 319, 1070
BpuEI CTTGAG 2 cut(s) 221, 385
BpuMI CCSGG 3 cut(s) 50, 51, 552
Bsa29I ATCGAT 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 49, 441
BsaWI WCCGGW 1 cut(s) 945
BsaXI ACNNNNNCTCC 2 cut(s) 1043, 1073
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 594, 613
Bse1I ACTGG 2 cut(s) 359, 885
Bse3DI GCAATG 1 cut(s) 1024
BseBI CCWGG 4 cut(s) 420, 437, 924, 1134
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 49, 441
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 3 cut(s) 442, 594, 613
BseMI GCAATG 1 cut(s) 1024
BseMII CTCAG 4 cut(s) 469, 570, 966, 974
BseNI ACTGG 2 cut(s) 359, 885
BseRI GAGGAG 3 cut(s) 242, 388, 1079
BseXI GCAGC 3 cut(s) 4, 295, 1038
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 1003
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 4 cut(s) 50, 551, 663, 946
BslFI GGGAC 3 cut(s) 372, 440, 891
BslI CCNNNNNNNGG 3 cut(s) 442, 594, 613
BsmAI GTCTC 4 cut(s) 185, 400, 521, 575
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 3 cut(s) 372, 440, 891
BsnI GGCC 1 cut(s) 440
Bso31I GGTCTC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp143I GATC 6 cut(s) 269, 628, 672, 680, 685, 696
BspACI CCGC 3 cut(s) 875, 914, 958
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 4 cut(s) 468, 571, 967, 975
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 271, 661, 682
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 5 cut(s) 264, 277, 675, 680, 688
BspQI GCTCTTC 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 1024
BsrI ACTGG 2 cut(s) 359, 885
BssECI CCNNGG 2 cut(s) 49, 441
BssMI GATC 6 cut(s) 269, 628, 672, 680, 685, 696
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 420, 437, 924, 1134
Bst4CI ACNGT 4 cut(s) 199, 277, 473, 624
Bst6I CTCTTC 1 cut(s) 991
BstC8I GCNNGC 3 cut(s) 343, 570, 1024
BstDEI CTNAG 5 cut(s) 115, 455, 579, 975, 983
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 6 cut(s) 272, 631, 675, 683, 688, 699
BstMAI GTCTC 4 cut(s) 185, 400, 521, 575
BstMBI GATC 6 cut(s) 269, 628, 672, 680, 685, 696
BstMWI GCNNNNNNNGC 6 cut(s) 103, 329, 338, 881, 979, 1023
BstNI CCWGG 4 cut(s) 420, 437, 924, 1134
BstSCI CCNGG 7 cut(s) 48, 49, 418, 435, 550, 922, 1132
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 3 cut(s) 4, 295, 1038
BstV2I GAAGAC 4 cut(s) 209, 407, 767, 840
BstX2I RGATCY 2 cut(s) 269, 680
BstYI RGATCY 2 cut(s) 269, 680
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 2 cut(s) 27, 315
BtsIMutI CAGTG 3 cut(s) 27, 282, 315
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 3 cut(s) 343, 570, 1024
CaiI CAGNNNCTG 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 929, 1130
Cfr9I CCCGGG 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 2 cut(s) 275, 289
CsiI ACCWGGT 1 cut(s) 1132
Csp6I GTAC 3 cut(s) 112, 244, 433
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 2 cut(s) 1006, 1087
CviQI GTAC 3 cut(s) 112, 244, 433
DdeI CTNAG 5 cut(s) 115, 455, 579, 975, 983
DpnI GATC 6 cut(s) 271, 630, 674, 682, 687, 698
DpnII GATC 6 cut(s) 269, 628, 672, 680, 685, 696
DraIII CACNNNGTG 2 cut(s) 144, 473
DriI GACNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 991
Eam1105I GACNNNNNGTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 991
Ecl136II GAGCTC 1 cut(s) 1001
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 1003
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 2 cut(s) 929, 1130
Eco53kI GAGCTC 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 1001
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoRII CCWGG 4 cut(s) 418, 435, 922, 1132
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 2 cut(s) 1009, 1090
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 698, 730
FaqI GGGAC 3 cut(s) 372, 440, 891
FatI CATG 2 cut(s) 1005, 1086
FauI CCCGC 1 cut(s) 868
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 18, 284, 959, 1027
FokI GGATG 1 cut(s) 906
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 4 cut(s) 18, 284, 959, 1027
FspBI CTAG 2 cut(s) 98, 290
GluI GCNGC 4 cut(s) 18, 284, 959, 1027
GsuI CTGGAG 2 cut(s) 319, 1070
HaeIII GGCC 1 cut(s) 440
HapII CCGG 4 cut(s) 50, 551, 663, 946
HgaI GACGC 2 cut(s) 275, 289
Hin1II CATG 2 cut(s) 1009, 1090
HinfI GANTC 4 cut(s) 232, 453, 985, 1117
HpaII CCGG 4 cut(s) 50, 551, 663, 946
HphI GGTGA 3 cut(s) 83, 211, 665
Hpy166II GTNNAC 1 cut(s) 929
Hpy188I TCNGA 7 cut(s) 34, 226, 373, 580, 685, 1116, 1178
Hpy188III TCNNGA 8 cut(s) 238, 290, 336, 349, 461, 689, 810, 940
Hpy8I GTNNAC 1 cut(s) 929
HpyAV CCTTC 3 cut(s) 257, 768, 1142
HpyCH4III ACNGT 4 cut(s) 199, 277, 473, 624
HpyCH4IV ACGT 3 cut(s) 361, 384, 575
HpyCH4V TGCA 9 cut(s) 20, 106, 186, 300, 308, 345, 512, 731, 855
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 329, 338, 881, 979, 1023
HpyF3I CTNAG 5 cut(s) 115, 455, 579, 975, 983
HpySE526I ACGT 3 cut(s) 361, 384, 575
Hsp92II CATG 2 cut(s) 1009, 1090
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 6 cut(s) 269, 628, 672, 680, 685, 696
LguI GCTCTTC 1 cut(s) 991
LmnI GCTCC 2 cut(s) 659, 665
Lsp1109I GCAGC 3 cut(s) 4, 295, 1038
LweI GCATC 4 cut(s) 4, 18, 295, 354
MabI ACCWGGT 1 cut(s) 1132
MaeI CTAG 2 cut(s) 98, 290
MaeII ACGT 3 cut(s) 361, 384, 575
MaeIII GTNAC 3 cut(s) 277, 310, 1138
MalI GATC 6 cut(s) 271, 630, 674, 682, 687, 698
MboI GATC 6 cut(s) 269, 628, 672, 680, 685, 696
MboII GAAGA 8 cut(s) 49, 214, 407, 772, 845, 1008, 1106, 1109
MfeI CAATTG 1 cut(s) 1035
MflI RGATCY 2 cut(s) 269, 680
MhlI GDGCHC 1 cut(s) 1003
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 4 cut(s) 63, 847, 1030, 1035
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 2 cut(s) 447, 994
MmeI TCCRAC 2 cut(s) 396, 1041
MnlI CCTC 8 cut(s) 99, 220, 260, 343, 409, 720, 1057, 1074
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 1 cut(s) 963
MslI CAYNNNNRTG 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 4 cut(s) 50, 551, 663, 946
MspR9I CCNGG 7 cut(s) 50, 51, 420, 437, 552, 924, 1134
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 4 cut(s) 420, 437, 924, 1134
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 6 cut(s) 103, 329, 338, 881, 979, 1023
NciI CCSGG 3 cut(s) 50, 51, 552
NdeII GATC 6 cut(s) 269, 628, 672, 680, 685, 696
NlaIII CATG 2 cut(s) 1009, 1090
NlaIV GGNNCC 3 cut(s) 271, 661, 682
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 2 cut(s) 277, 310
PciSI GCTCTTC 1 cut(s) 991
PfeI GAWTC 2 cut(s) 232, 1117
PflFI GACNNNGTC 1 cut(s) 456
PkrI GCNGC 4 cut(s) 19, 285, 960, 1028
PleI GAGTC 2 cut(s) 447, 993
PpsI GAGTC 2 cut(s) 447, 993
Psp124BI GAGCTC 1 cut(s) 1003
Psp6I CCWGG 4 cut(s) 418, 435, 922, 1132
PspGI CCWGG 4 cut(s) 418, 435, 922, 1132
PspN4I GGNNCC 3 cut(s) 271, 661, 682
PspPI GGNCC 2 cut(s) 929, 1130
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 342
PsuI RGATCY 2 cut(s) 269, 680
PsyI GACNNNGTC 1 cut(s) 456
RsaI GTAC 3 cut(s) 113, 245, 434
RsaNI GTAC 3 cut(s) 112, 244, 433
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 1003
SapI GCTCTTC 1 cut(s) 991
SaqAI TTAA 1 cut(s) 963
SatI GCNGC 4 cut(s) 18, 284, 959, 1027
Sau3AI GATC 6 cut(s) 269, 628, 672, 680, 685, 696
Sau96I GGNCC 2 cut(s) 929, 1130
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 2 cut(s) 447, 994
ScrFI CCNGG 7 cut(s) 50, 51, 420, 437, 552, 924, 1134
SduI GDGCHC 1 cut(s) 1003
SexAI ACCWGGT 1 cut(s) 1132
SfaNI GCATC 4 cut(s) 4, 18, 295, 354
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 2 cut(s) 929, 1130
SmaI CCCGGG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 236, 400
SmoI CTYRAG 2 cut(s) 236, 400
Sse9I AATT 4 cut(s) 63, 847, 1030, 1035
SsiI CCGC 3 cut(s) 875, 914, 958
SspMI CTAG 2 cut(s) 98, 290
SstI GAGCTC 1 cut(s) 1003
StyD4I CCNGG 7 cut(s) 48, 49, 418, 435, 550, 922, 1132
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 4 cut(s) 199, 277, 473, 624
TaiI ACGT 3 cut(s) 364, 387, 578
TaqI TCGA 4 cut(s) 12, 120, 809, 1162
TaqII GACCGA 1 cut(s) 329
TasI AATT 4 cut(s) 63, 847, 1030, 1035
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 961
TfiI GAWTC 2 cut(s) 232, 1117
Tru1I TTAA 1 cut(s) 963
Tru9I TTAA 1 cut(s) 963
TscAI CASTG 3 cut(s) 27, 282, 315
TseFI GTSAC 2 cut(s) 277, 310
TseI GCWGC 3 cut(s) 17, 283, 1026
Tsp45I GTSAC 2 cut(s) 277, 310
TspDTI ATGAA 4 cut(s) 713, 908, 1103, 1107
TspGWI ACGGA 1 cut(s) 509
TspMI CCCGGG 1 cut(s) 49
TspRI CASTG 3 cut(s) 27, 282, 315
Tth111I GACNNNGTC 1 cut(s) 456
VpaK11BI GGWCC 2 cut(s) 929, 1130
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 1 cut(s) 847
XbaI TCTAGA 1 cut(s) 289
XmaI CCCGGG 1 cut(s) 49
XspI CTAG 2 cut(s) 98, 290
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.