Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016131

Physical Location & Seq

Genomic Coordinates Reverse (-)

4109532 .. 4110913

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAGTGAAGGTATTGCACAAGGAGATTCTACAATGAAGGCTAACCCTGGAAAAGCTACGATTTTGGCTCTTGGCAAGGCCTTTCCTCACCAGCTTGTCATGCAGGATTTTCTGGTTGATGGATATTTCAAAGATACCAACTGTGATGATCCAGACCTCAAGGAGAAGCTGGCTCGACTCTGCAAGACAACGACAGTCAAAACTCGGTATGTGGTCATGTCAGACGAGATTCTAAAGAGATATCCAGAGCTTGCAATTGAAGGAATTCCCACCGTGAAGCAAAGACTAGACATTTGCAATGATGCTGTAACACAGATGGCCATTGAAGCTTCACATGCTTGCATCAAGAACTGGGGAAGGCCTGCTTCGGACATAACGCACTTAGTCTATGTCTCATCCAGTGAAGCTAGACTACCTGGTGGAGACCTTTACCTAGCAAGAGGACTTGAACTCTCCCCTCGGACTAAAAGAGTCATGCTTTACTTCTCGGGTTGCTCTGGTGGCGTGGCAGGTCTTCGTGTAGCAAAAGACATCGCCGAGAACAATCCAGGGAGCAGAGTTCTGCTTGCTACTTCTGAAACTACTATTATCGGCTACAAACCACCAAGTGCACATAGACCATATGATCTTGTTGGTGTAGCACTCTTTGGTGATGGGGCTGGAGCTATGATCATTGGCTCAGACCCCAAGCTAGTCTCCGAAAAGCCTCTATTTGAGCTTCACACAGCGCTTCAGGAATTCTTGCCCGGCACGGAGAAAACCATAGATGGAAGGCTCACAGAAGAAGGGATTAGTTTCAAGCTAGCTAGAGAGCTTCCTCAGATAATCGAAGATAATGTGGAGGGGTTCTGTGGAAGATTAATGGATGTAGTTGGGTTCGATAACAAGGAGTACAATACGATGTTCTGGGCTGTTCATCCAGGGGGTCCTGCAATCTTGAATCGGATGGAAAAGCGTCTGGATTTGTTTCCGGAAAAGCTGAATGCTAGCAGAAGAGCTCTGATGGATTATGGGAATGCTAGCAGCAACACCATTGTGTATGTGCTTGAGTACATGATAGAAGAGAGCAAAAAGATCAAGAAGAAAGAGCAAGCAGATGGTGAATGGGGTTTAATTCTGGCCTTTGGACCTGGTATAACTTTTGAGGGCATCCTAGCAAGGAACCTAACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0022607 GO:0030198 GO:0030638 GO:0030639 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0080110 GO:0085029 GO:0090439 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

392

Amino Acids

43.04

Weight (kDa)

5.82

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	13 - 230	4.1e-99	Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III	PF08545	165 - 229	5.3e-06	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C	PF02797	240 - 390	2.7e-60	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34850 AT4G34850
fragaria_vesca	FvH4_2g02110
malus_domestica	MD05G1115000.v1.1
prunus_persica	Prupe.8G159600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245621
rosa_laevigata	RLG00000015299
rosa_multiflora	Rmu_sc0001341.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215220
rosa_rugosa	Rorug05G0515100.1
rosa_samantha	Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana	Rw6G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	973
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	267, 740
AcuI	CTGAAG	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	2 cut(s)	896, 1055
AfeI	AGCGCT	1 cut(s)	732
AgsI	TTSAA	6 cut(s)	133, 263, 329, 452, 802, 943
AjnI	CCWGG	5 cut(s)	49, 418, 550, 922, 1132
AleI	CACNNNNGTG	1 cut(s)	1037
Alw21I	GWGCWC	2 cut(s)	616, 1003
Alw26I	GTCTC	3 cut(s)	400, 420, 703
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	490
Aor13HI	TCCGGA	1 cut(s)	973
Aor51HI	AGCGCT	1 cut(s)	732
AoxI	GGCC	4 cut(s)	81, 321, 362, 1122
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	1026
ApoI	RAATTY	2 cut(s)	267, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AseI	ATTAAT	1 cut(s)	863
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	929, 1130
AsuC2I	CCSGG	1 cut(s)	750
AsuHPI	GGTGA	3 cut(s)	83, 665, 1115
AsuNHI	GCTAGC	3 cut(s)	805, 989, 1022
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	929, 1130
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	1003
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	2 cut(s)	616, 1003
BbvI	GCAGC	1 cut(s)	1038
BccI	CCATC	7 cut(s)	116, 313, 650, 764, 943, 1000, 1094
BciT130I	CCWGG	5 cut(s)	51, 420, 552, 924, 1134
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	750
BcoDI	GTCTC	3 cut(s)	400, 420, 703
BfaI	CTAG	9 cut(s)	290, 411, 437, 695, 806, 810, 990, 1023, 1157
BfoI	RGCGCY	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	1 cut(s)	1027
BlsI	GCNGC	1 cut(s)	1028
Bme1390I	CCNGG	6 cut(s)	51, 420, 552, 750, 924, 1134
Bme18I	GGWCC	2 cut(s)	929, 1130
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	929, 1130
BmiI	GGNNCC	2 cut(s)	930, 1166
BmrFI	CCNGG	6 cut(s)	51, 420, 552, 750, 924, 1134
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	295, 354, 1161
BmtI	GCTAGC	3 cut(s)	809, 993, 1026
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	146, 1070
BpuMI	CCSGG	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	49, 461, 551, 923
BsaWI	WCCGGW	1 cut(s)	973
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	359, 402
Bse3DI	GCAATG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	973
BseBI	CCWGG	5 cut(s)	51, 420, 552, 924, 1134
BseDI	CCNNGG	4 cut(s)	49, 461, 551, 923
BseGI	GGATG	5 cut(s)	398, 874, 919, 954, 1152
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	696, 836
BseNI	ACTGG	2 cut(s)	359, 402
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	1038
BshFI	GGCC	4 cut(s)	83, 323, 364, 1124
BsiHKAI	GWGCWC	2 cut(s)	616, 1003
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	750, 974
BsmAI	GTCTC	3 cut(s)	400, 420, 703
BsmI	GAATGC	2 cut(s)	991, 1024
BsnI	GGCC	4 cut(s)	83, 323, 364, 1124
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	616, 1003
Bsp13I	TCCGGA	1 cut(s)	973
Bsp143I	GATC	4 cut(s)	151, 628, 672, 1077
BspANI	GGCC	4 cut(s)	83, 323, 364, 1124
BspCNI	CTCAG	2 cut(s)	695, 835
BspEI	TCCGGA	1 cut(s)	973
BspLI	GGNNCC	2 cut(s)	930, 1166
BspMI	ACCTGC	1 cut(s)	503
BspOI	GCTAGC	3 cut(s)	809, 993, 1026
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	991
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	359, 402
BssECI	CCNNGG	4 cut(s)	49, 461, 551, 923
BssMI	GATC	4 cut(s)	151, 628, 672, 1077
Bst2UI	CCWGG	5 cut(s)	51, 420, 552, 924, 1134
Bst4CI	ACNGT	3 cut(s)	146, 199, 277
Bst6I	CTCTTC	2 cut(s)	991, 1059
BstC8I	GCNNGC	9 cut(s)	174, 255, 343, 366, 570, 807, 991, 1024, 1095
BstDEI	CTNAG	3 cut(s)	385, 682, 822
BstF5I	GGATG	5 cut(s)	398, 874, 919, 954, 1152
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	4 cut(s)	154, 631, 675, 1080
BstMAI	GTCTC	3 cut(s)	400, 420, 703
BstMBI	GATC	4 cut(s)	151, 628, 672, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 329, 338, 504
BstNI	CCWGG	5 cut(s)	51, 420, 552, 924, 1134
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	6 cut(s)	49, 418, 550, 748, 922, 1132
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	1038
BstV2I	GAAGAC	1 cut(s)	509
BsuRI	GGCC	4 cut(s)	83, 323, 364, 1124
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	5 cut(s)	398, 874, 919, 954, 1152
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	9 cut(s)	174, 255, 343, 366, 570, 807, 991, 1024, 1095
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	929, 1130
CseI	GACGC	1 cut(s)	947
CsiI	ACCWGGT	2 cut(s)	418, 1132
Csp6I	GTAC	2 cut(s)	895, 1054
CviAII	CATG	5 cut(s)	103, 220, 338, 478, 1057
CviQI	GTAC	2 cut(s)	895, 1054
DdeI	CTNAG	3 cut(s)	385, 682, 822
DpnI	GATC	4 cut(s)	153, 630, 674, 1079
DpnII	GATC	4 cut(s)	151, 628, 672, 1077
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	991, 1059
EarI	CTCTTC	2 cut(s)	991, 1059
Ecl136II	GAGCTC	1 cut(s)	1001
Eco147I	AGGCCT	2 cut(s)	83, 364
Eco24I	GRGCYC	1 cut(s)	1003
Eco31I	GGTCTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	929, 1130
Eco47III	AGCGCT	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	1001
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRI	GAATTC	2 cut(s)	267, 740
EcoRII	CCWGG	5 cut(s)	49, 418, 550, 922, 1132
EcoRV	GATATC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	1003
FaeI	CATG	5 cut(s)	106, 223, 341, 481, 1060
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	5 cut(s)	102, 219, 337, 477, 1056
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	1027
FokI	GGATG	5 cut(s)	385, 881, 906, 961, 1139
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	1 cut(s)	1027
FspBI	CTAG	9 cut(s)	290, 411, 437, 695, 806, 810, 990, 1023, 1157
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	1 cut(s)	1027
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	4 cut(s)	83, 323, 364, 1124
HapII	CCGG	2 cut(s)	750, 974
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	5 cut(s)	106, 223, 341, 481, 1060
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	5 cut(s)	29, 180, 232, 474, 943
HpaII	CCGG	2 cut(s)	750, 974
HphI	GGTGA	3 cut(s)	83, 665, 1115
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188III	TCNNGA	8 cut(s)	155, 248, 349, 737, 940, 962, 974, 1081
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	6 cut(s)	5, 34, 257, 354, 768, 782
HpyCH4III	ACNGT	3 cut(s)	146, 199, 277
HpyCH4V	TGCA	8 cut(s)	20, 106, 186, 257, 300, 345, 614, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 329, 338, 504
HpyF3I	CTNAG	3 cut(s)	385, 682, 822
Hsp92II	CATG	5 cut(s)	106, 223, 341, 481, 1060
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	151, 628, 672, 1077
LguI	GCTCTTC	1 cut(s)	991
LmnI	GCTCC	2 cut(s)	555, 665
Lsp1109I	GCAGC	1 cut(s)	1038
LweI	GCATC	3 cut(s)	295, 354, 1161
MabI	ACCWGGT	2 cut(s)	418, 1132
MaeI	CTAG	9 cut(s)	290, 411, 437, 695, 806, 810, 990, 1023, 1157
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	153, 630, 674, 1079
MboI	GATC	4 cut(s)	151, 628, 672, 1077
MboII	GAAGA	7 cut(s)	509, 797, 845, 870, 1008, 1076, 1096
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	616, 1003
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	4 cut(s)	258, 267, 740, 1116
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	174, 483
MnlI	CCTC	8 cut(s)	99, 170, 437, 471, 720, 831, 838, 1141
Mox20I	TGGCCA	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	2 cut(s)	863, 1115
MslI	CAYNNNNRTG	1 cut(s)	1037
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	2 cut(s)	750, 974
MspR9I	CCNGG	6 cut(s)	51, 420, 552, 750, 924, 1134
MunI	CAATTG	1 cut(s)	258
Mva1269I	GAATGC	2 cut(s)	991, 1024
MvaI	CCWGG	5 cut(s)	51, 420, 552, 924, 1134
MwoI	GCNNNNNNNGC	4 cut(s)	103, 329, 338, 504
NciI	CCSGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	4 cut(s)	151, 628, 672, 1077
NheI	GCTAGC	3 cut(s)	805, 989, 1022
NlaIII	CATG	5 cut(s)	106, 223, 341, 481, 1060
NlaIV	GGNNCC	2 cut(s)	930, 1166
NmeAIII	GCCGAG	1 cut(s)	565
NspI	RCATGY	1 cut(s)	341
OliI	CACNNNNGTG	1 cut(s)	1037
PceI	AGGCCT	2 cut(s)	83, 364
PciSI	GCTCTTC	1 cut(s)	991
PctI	GAATGC	2 cut(s)	991, 1024
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	29, 232, 943
PkrI	GCNGC	1 cut(s)	1028
PleI	GAGTC	2 cut(s)	174, 482
PpsI	GAGTC	2 cut(s)	174, 482
PpuMI	RGGWCCY	1 cut(s)	929
PshBI	ATTAAT	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	5 cut(s)	49, 418, 550, 922, 1132
PspGI	CCWGG	5 cut(s)	49, 418, 550, 922, 1132
PspN4I	GGNNCC	2 cut(s)	930, 1166
PspPI	GGNCC	2 cut(s)	929, 1130
PspPPI	RGGWCCY	1 cut(s)	929
RsaI	GTAC	2 cut(s)	896, 1055
RsaNI	GTAC	2 cut(s)	895, 1054
RseI	CAYNNNNRTG	1 cut(s)	1037
SacI	GAGCTC	1 cut(s)	1003
SapI	GCTCTTC	1 cut(s)	991
SaqAI	TTAA	2 cut(s)	863, 1115
SatI	GCNGC	1 cut(s)	1027
Sau3AI	GATC	4 cut(s)	151, 628, 672, 1077
Sau96I	GGNCC	2 cut(s)	929, 1130
SchI	GAGTC	2 cut(s)	174, 483
ScrFI	CCNGG	6 cut(s)	51, 420, 552, 750, 924, 1134
SduI	GDGCHC	2 cut(s)	616, 1003
SexAI	ACCWGGT	2 cut(s)	418, 1132
SfaNI	GCATC	3 cut(s)	295, 354, 1161
SinI	GGWCC	2 cut(s)	929, 1130
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	2 cut(s)	161, 1049
SmoI	CTYRAG	2 cut(s)	161, 1049
Sse9I	AATT	4 cut(s)	258, 267, 740, 1116
SseBI	AGGCCT	2 cut(s)	83, 364
SspMI	CTAG	9 cut(s)	290, 411, 437, 695, 806, 810, 990, 1023, 1157
SstI	GAGCTC	1 cut(s)	1003
StuI	AGGCCT	2 cut(s)	83, 364
StyD4I	CCNGG	6 cut(s)	49, 418, 550, 748, 922, 1132
TaaI	ACNGT	3 cut(s)	146, 199, 277
TaqI	TCGA	3 cut(s)	178, 831, 882
TasI	AATT	4 cut(s)	258, 267, 740, 1116
TatI	WGTACW	2 cut(s)	894, 1053
TfiI	GAWTC	3 cut(s)	29, 232, 943
Tru1I	TTAA	2 cut(s)	863, 1115
Tru9I	TTAA	2 cut(s)	863, 1115
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	1 cut(s)	1026
TspDTI	ATGAA	2 cut(s)	53, 908
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	929, 1130
VspI	ATTAAT	1 cut(s)	863
XapI	RAATTY	2 cut(s)	267, 740
XceI	RCATGY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	9 cut(s)	290, 411, 437, 695, 806, 810, 990, 1023, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.