Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016131

Physical Location & Seq

Genomic Coordinates Forward (+)

16866325 .. 16868559

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G159600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGGAGTGAGCATGTTGGGCAGGGAGGTTCCATAATGAAGGCCAACGGCGGCAGAGCGACGATTTTGGCTCTTGGCAAGGCCTTCCCTCATCAGCTTGTCATGCAGGATTTTCTGGTTGATGGGTATTTCAGAGATACCAACTGTGATGATCCTGAACTTAAGCAGAAGCTGGCTCGACTCTGCAAGACAACAACAGTCAAAACTAGGTATGTTGTCATGTCAGATGAGATTCTAGAGAAGTACCCAGAGCTTACAACTGAAGGCACACCCACTATAAAGCAAAGACTGCATATTTGTAACGAAGCTGTAACACAGATGGCAATTGAAGCTTCAGGAGCTTGCATCAAGAACTGGGGGAGACCTATTTCAGATATAACACACTTGGTCTATGTCTCATCCAGTGAAGCTCGACTACCCGGTGGTGACATTTACCTAGCAAAAGGACTTGGCCTCCGTCCCGAGACTCAAAGGGTCTTGCTTTACTTCTCAGGCTGCTCGGGTGGTGTGGCTGGCCTTCGTGTTGCCAAGGACATTGCTGAGAACAATCCAGGAAGCAGAGTACTACTTGCTACTTCTGAAACCACTATTATTGGCTACAAACCACCAAGTGCACATAGACCGTATGATCTGGTTGGTGTTGCACTATTTGGGGATGGTGCTGGAGCCATGTTGATTGGCTCAGACCCTGACTTAATCTCTGAAAAGCCTCTGTTTGAGCTTCACACTGCCATACAAGAGTTCCTGCCAGACACCGAGAAGACCATTGATGGAAGGGTCACAGAAGAGGGGATTAGTTTCAAGCTAGGAAGAGAGCTTCCTCAGATAATTGAAGATCACATTGAAGGGTTCTGTGGGAGGTTGATGGGAGTTCTTGGATATGATAACAAGGAGTACAATAAGATGTTTTGGGCTGTTCATCCAGGAGGTCCTGCAATCTTGAACCGGTTGGAGAAGCGTCTTGATTTGTTCCCAGAGAAGTTAAATGCCAGCCGACGAGCTCTGACAGATTATGGCAATGCTAGCAGTAATACCATAGTGTATGTGCTGGAGTACATGATAGAAGAGAGCAAGAAGATCAAGAAGGAACAGCAAGAAGGAGATGGTGAATGGGGATTGATACTGGCTTTTGGACCTGGAATTACTTTTGAGGGAATTCTAGCAAGGAACCTTGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0022607 GO:0030198 GO:0030638 GO:0030639 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0080110 GO:0085029 GO:0090439 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

394

Amino Acids

43.08

Weight (kDa)

5.62

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34850 AT4G34850
fragaria_vesca	FvH4_2g02110
malus_domestica	MD05G1115000.v1.1
prunus_persica	Prupe.8G159600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245621
rosa_laevigata	RLG00000015299
rosa_multiflora	Rmu_sc0001341.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215220
rosa_rugosa	Rorug05G0515100.1
rosa_samantha	Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana	Rw6G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	1155
AcuI	CTGAAG	2 cut(s)	282, 318
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	4 cut(s)	245, 564, 896, 1055
AflII	CTTAAG	1 cut(s)	161
AgeI	ACCGGT	1 cut(s)	945
AgsI	TTSAA	5 cut(s)	329, 802, 833, 845, 943
AjnI	CCWGG	3 cut(s)	550, 922, 1135
Alw21I	GWGCWC	2 cut(s)	616, 1003
Alw26I	GTCTC	3 cut(s)	355, 400, 458
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	2 cut(s)	172, 689
Ama87I	CYCGRG	2 cut(s)	461, 499
AoxI	GGCC	4 cut(s)	42, 81, 451, 514
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	1 cut(s)	1155
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AsiGI	ACCGGT	1 cut(s)	945
AspS9I	GGNCC	2 cut(s)	929, 1133
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	2 cut(s)	437, 1118
AsuNHI	GCTAGC	1 cut(s)	1022
AvaI	CYCGRG	2 cut(s)	461, 499
AvaII	GGWCC	2 cut(s)	929, 1133
BaeGI	GKGCMC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	1003
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	616, 1003
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	6 cut(s)	116, 313, 650, 764, 859, 1097
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	3 cut(s)	552, 924, 1137
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	355, 400, 458
BfaI	CTAG	6 cut(s)	207, 236, 437, 806, 1023, 1160
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	52, 496
BlsI	GCNGC	2 cut(s)	53, 497
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	4 cut(s)	420, 552, 924, 1137
Bme18I	GGWCC	2 cut(s)	929, 1133
BmeT110I	CYCGRG	2 cut(s)	461, 499
BmgT120I	GGNCC	2 cut(s)	929, 1133
BmiI	GGNNCC	3 cut(s)	31, 667, 1169
BmrFI	CCNGG	4 cut(s)	420, 552, 924, 1137
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	354
BmtI	GCTAGC	1 cut(s)	1026
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	2 cut(s)	684, 1070
BpuMI	CCSGG	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	945
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bse118I	RCCGGY	1 cut(s)	945
Bse1I	ACTGG	3 cut(s)	359, 402, 1128
Bse3DI	GCAATG	2 cut(s)	534, 1024
BseBI	CCWGG	3 cut(s)	552, 924, 1137
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	3 cut(s)	398, 661, 919
BseMI	GCAATG	2 cut(s)	534, 1024
BseMII	CTCAG	4 cut(s)	504, 531, 696, 836
BseNI	ACTGG	3 cut(s)	359, 402, 1128
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	4 cut(s)	44, 83, 453, 516
BshTI	ACCGGT	1 cut(s)	945
BsiHKAI	GWGCWC	2 cut(s)	616, 1003
BsiHKCI	CYCGRG	2 cut(s)	461, 499
BsiSI	CCGG	2 cut(s)	420, 946
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	3 cut(s)	355, 400, 458
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	4 cut(s)	44, 83, 453, 516
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	2 cut(s)	461, 499
Bsp1286I	GDGCHC	2 cut(s)	616, 1003
Bsp143I	GATC	4 cut(s)	151, 628, 835, 1077
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	4 cut(s)	44, 83, 453, 516
BspCNI	CTCAG	4 cut(s)	503, 532, 695, 835
BspLI	GGNNCC	3 cut(s)	31, 667, 1169
BspOI	GCTAGC	1 cut(s)	1026
BspPI	GGATC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	2 cut(s)	534, 1024
BsrFI	RCCGGY	1 cut(s)	945
BsrI	ACTGG	3 cut(s)	359, 402, 1128
BssAI	RCCGGY	1 cut(s)	945
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	4 cut(s)	151, 628, 835, 1077
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	552, 924, 1137
Bst4CI	ACNGT	3 cut(s)	146, 199, 624
Bst6I	CTCTTC	3 cut(s)	780, 805, 1059
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstC8I	GCNNGC	5 cut(s)	174, 343, 514, 991, 1024
BstDEI	CTNAG	4 cut(s)	490, 540, 682, 822
BstF5I	GGATG	3 cut(s)	398, 661, 919
BstKTI	GATC	4 cut(s)	154, 631, 838, 1080
BstMAI	GTCTC	3 cut(s)	355, 400, 458
BstMBI	GATC	4 cut(s)	151, 628, 835, 1077
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 103, 289, 329, 338, 1023
BstNI	CCWGG	3 cut(s)	552, 924, 1137
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	4 cut(s)	418, 550, 922, 1135
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	767
BsuRI	GGCC	4 cut(s)	44, 83, 453, 516
BtsCI	GGATG	3 cut(s)	398, 661, 919
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	409, 726
Cac8I	GCNNGC	5 cut(s)	174, 343, 514, 991, 1024
CaiI	CAGNNNCTG	2 cut(s)	172, 689
Cfr10I	RCCGGY	1 cut(s)	945
Cfr13I	GGNCC	2 cut(s)	929, 1133
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	4 cut(s)	244, 563, 895, 1054
CspAI	ACCGGT	1 cut(s)	945
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	5 cut(s)	14, 103, 220, 670, 1057
CviQI	GTAC	4 cut(s)	244, 563, 895, 1054
DdeI	CTNAG	4 cut(s)	490, 540, 682, 822
DpnI	GATC	4 cut(s)	153, 630, 837, 1079
DpnII	GATC	4 cut(s)	151, 628, 835, 1077
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	3 cut(s)	780, 805, 1059
EarI	CTCTTC	3 cut(s)	780, 805, 1059
Ecl136II	GAGCTC	1 cut(s)	1001
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	1003
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	929, 1133
Eco53kI	GAGCTC	1 cut(s)	1001
Eco57I	CTGAAG	2 cut(s)	282, 318
Eco88I	CYCGRG	2 cut(s)	461, 499
EcoICRI	GAGCTC	1 cut(s)	1001
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	3 cut(s)	550, 922, 1135
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	1003
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	5 cut(s)	17, 106, 223, 673, 1060
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	13, 102, 219, 669, 1056
Fnu4HI	GCNGC	2 cut(s)	52, 496
FokI	GGATG	3 cut(s)	385, 668, 906
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	2 cut(s)	52, 496
FspBI	CTAG	6 cut(s)	207, 236, 437, 806, 1023, 1160
GluI	GCNGC	2 cut(s)	52, 496
GsuI	CTGGAG	2 cut(s)	684, 1070
HaeIII	GGCC	4 cut(s)	44, 83, 453, 516
HapII	CCGG	2 cut(s)	420, 946
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	5 cut(s)	17, 106, 223, 673, 1060
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	3 cut(s)	180, 232, 466
HpaII	CCGG	2 cut(s)	420, 946
HphI	GGTGA	2 cut(s)	437, 1118
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	8 cut(s)	134, 226, 373, 580, 685, 703, 825, 1005
Hpy188III	TCNNGA	8 cut(s)	155, 236, 336, 349, 461, 940, 962, 1081
Hpy8I	GTNNAC	1 cut(s)	614
Hpy99I	CGWCG	2 cut(s)	64, 999
HpyAV	CCTTC	8 cut(s)	34, 94, 257, 527, 768, 839, 1078, 1091
HpyCH4III	ACNGT	3 cut(s)	146, 199, 624
HpyCH4V	TGCA	7 cut(s)	106, 186, 292, 345, 614, 644, 935
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 103, 289, 329, 338, 1023
HpyF3I	CTNAG	4 cut(s)	490, 540, 682, 822
Hsp92II	CATG	5 cut(s)	17, 106, 223, 673, 1060
Kzo9I	GATC	4 cut(s)	151, 628, 835, 1077
LmnI	GCTCC	2 cut(s)	338, 665
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	6 cut(s)	207, 236, 437, 806, 1023, 1160
MaeIII	GTNAC	4 cut(s)	299, 310, 425, 778
MalI	GATC	4 cut(s)	153, 630, 837, 1079
MboI	GATC	4 cut(s)	151, 628, 835, 1077
MboII	GAAGA	6 cut(s)	772, 797, 822, 845, 1076, 1087
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	616, 1003
MluCI	AATT	4 cut(s)	324, 828, 1140, 1155
MlyI	GAGTC	2 cut(s)	174, 460
MmeI	TCCRAC	1 cut(s)	930
MnlI	CCTC	9 cut(s)	20, 99, 464, 720, 781, 831, 852, 920, 1144
MseI	TTAA	3 cut(s)	162, 695, 983
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	420, 946
MspR9I	CCNGG	4 cut(s)	420, 552, 924, 1137
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	3 cut(s)	552, 924, 1137
MwoI	GCNNNNNNNGC	6 cut(s)	19, 103, 289, 329, 338, 1023
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	4 cut(s)	151, 628, 835, 1077
NheI	GCTAGC	1 cut(s)	1022
NlaIII	CATG	5 cut(s)	17, 106, 223, 673, 1060
NlaIV	GGNNCC	3 cut(s)	31, 667, 1169
NmuCI	GTSAC	2 cut(s)	425, 778
NspI	RCATGY	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	232
PfoI	TCCNGGA	2 cut(s)	550, 922
PinAI	ACCGGT	1 cut(s)	945
PkrI	GCNGC	2 cut(s)	53, 497
PleI	GAGTC	2 cut(s)	174, 460
PpsI	GAGTC	2 cut(s)	174, 460
PpuMI	RGGWCCY	1 cut(s)	929
Psp124BI	GAGCTC	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	550, 922, 1135
PspGI	CCWGG	3 cut(s)	550, 922, 1135
PspN4I	GGNNCC	3 cut(s)	31, 667, 1169
PspPI	GGNCC	2 cut(s)	929, 1133
PspPPI	RGGWCCY	1 cut(s)	929
PstNI	CAGNNNCTG	2 cut(s)	172, 689
RsaI	GTAC	4 cut(s)	245, 564, 896, 1055
RsaNI	GTAC	4 cut(s)	244, 563, 895, 1054
SacI	GAGCTC	1 cut(s)	1003
SaqAI	TTAA	3 cut(s)	162, 695, 983
SatI	GCNGC	2 cut(s)	52, 496
Sau3AI	GATC	4 cut(s)	151, 628, 835, 1077
Sau96I	GGNCC	2 cut(s)	929, 1133
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	174, 460
ScrFI	CCNGG	4 cut(s)	420, 552, 924, 1137
SduI	GDGCHC	2 cut(s)	616, 1003
SfaNI	GCATC	1 cut(s)	354
SinI	GGWCC	2 cut(s)	929, 1133
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	324, 828, 1140, 1155
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	6 cut(s)	207, 236, 437, 806, 1023, 1160
SstI	GAGCTC	1 cut(s)	1003
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	418, 550, 922, 1135
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	146, 199, 624
TaqI	TCGA	2 cut(s)	178, 412
TasI	AATT	4 cut(s)	324, 828, 1140, 1155
TatI	WGTACW	3 cut(s)	562, 894, 1053
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	162, 695, 983
Tru9I	TTAA	3 cut(s)	162, 695, 983
TscAI	CASTG	2 cut(s)	409, 733
TseFI	GTSAC	2 cut(s)	425, 778
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	2 cut(s)	425, 778
TspDTI	ATGAA	2 cut(s)	53, 908
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	409, 733
Vha464I	CTTAAG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	929, 1133
XapI	RAATTY	1 cut(s)	1155
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	6 cut(s)	207, 236, 437, 806, 1023, 1160
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.