Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016131

Physical Location & Seq

Genomic Coordinates Reverse (-)

1393835 .. 1395583

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTATCTATACATGGGGAGTGAAGGTATTGCACAAGGAGATTCTACAATGAAGGCCAACCCCGGAAAAGCTACGATTCTGGCTCTTGGGAAGGCCTTTCCTCACCAGCTTGTCATGCAGGATTTTCTGGTTGATGGATATTTCAAAGATACCAACTGTGATGATCCAGACCTCAAGGAGAAGCTGGCTCGACTCTGCAAGACAACAACAGTCAAAACTCGGTATGTGGTCATGTCAGACGAGATTCTAAAGAGATATCCAGAGCTTGCAATTGAAGGAATTCCCACCGTGAAGCAAAGACTAGACATTTGCAATGATGCTGTAACACAGATGGCCATTGAAGCTTCACATGCTTGCATCAAGAACTGGGGAAGGCCTGCTTCGGACATAACGCACTTAGTCTATGTCTCATCCAGTGAAGCTAGACTACCTGGTGGAGACCTTTACCTAGCAAGAGGACTTGAACTCTCCCCTCAGACTAAAAGAGTCATGCTTTACTTCTCGGGTTGCTCTGGTGGCGTGGCAGGTCTTCGTGTAGCTAAAGACATTGCCGAGAACAATCCAGGGAGCAGAGTTCTGCTTGCTACTTCTGAAACTACTATTATCGGCTACAAACCACCAAGTGCACATAGACCATATGATCTTGTTGGTGTAGCACTCTTTGGTGATGGGGCTGGAGCTATGATCATTGGCTCAGACCCAAAGCTAGTCTCCGAAAAGCCTCTATTTGAGCTTCACACAGCCCTTCAGGAATTCTTGCCCGGCACGGAGAAAACCATAGATGGAAGGCTCACAGAAGAAGGGATTAGTTTCAAGCTAGCTAGAGAGCTTCCTCAGATAATCGAAGATAATGTGGAGGGGTTCTGTGGAAGATTAATGGATGTAGTTGGGTTCGATAACAAGGAGTATAATAAGATGTTCTGGGCTGTTCATCCAGGGGGTCCTGCAATCTTGAATCGGATGGAAAAGCGTCTGGATTTGTTTCCGCAAAAGCTGAATGCTAGCAGAAGAGCTCTGATGGATTATGGGAATGCTAGCAGCAACACCATTGTGTATGTGCTTGAGTACATGATAGAAGAGAGCAAAAAGATCAAGAAGAAAGAGCACGCAGATGGTGAATGGGGTTTAATTCTGGCTTTTGGACCTGGTATAACTTTTGAGGGCATCCTTGCAAGGAACCTAACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0022607 GO:0030198 GO:0030638 GO:0030639 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0080110 GO:0085029 GO:0090439 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

396

Amino Acids

43.62

Weight (kDa)

6.05

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	17 - 234	2.5e-99	Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III	PF08545	169 - 233	5.3e-06	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C	PF02797	244 - 394	5.5e-60	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34850 AT4G34850
fragaria_vesca	FvH4_2g02110
malus_domestica	MD05G1115000.v1.1
prunus_persica	Prupe.8G159600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245621
rosa_laevigata	RLG00000015299
rosa_multiflora	Rmu_sc0001341.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215220
rosa_rugosa	Rorug05G0515100.1
rosa_samantha	Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana	Rw6G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	279, 752
AcuI	CTGAAG	1 cut(s)	731
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	1067
AgsI	TTSAA	6 cut(s)	145, 275, 341, 464, 814, 955
AjnI	CCWGG	4 cut(s)	430, 562, 934, 1144
AleI	CACNNNNGTG	1 cut(s)	1049
Alw21I	GWGCWC	3 cut(s)	628, 1015, 1107
Alw26I	GTCTC	3 cut(s)	412, 432, 715
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	4 cut(s)	54, 93, 333, 374
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	1038
ApoI	RAATTY	2 cut(s)	279, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AseI	ATTAAT	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	941, 1142
AsuC2I	CCSGG	2 cut(s)	63, 762
AsuHPI	GGTGA	3 cut(s)	95, 677, 1127
AsuNHI	GCTAGC	3 cut(s)	817, 1001, 1034
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	941, 1142
BaeGI	GKGCMC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	1015
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	3 cut(s)	628, 1015, 1107
BbvI	GCAGC	1 cut(s)	1050
BccI	CCATC	7 cut(s)	128, 325, 662, 776, 955, 1012, 1106
BciT130I	CCWGG	4 cut(s)	432, 564, 936, 1146
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	63, 762
BcoDI	GTCTC	3 cut(s)	412, 432, 715
BfaI	CTAG	8 cut(s)	302, 423, 449, 707, 818, 822, 1002, 1035
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	1039
BlsI	GCNGC	1 cut(s)	1040
Bme1390I	CCNGG	6 cut(s)	63, 432, 564, 762, 936, 1146
Bme18I	GGWCC	2 cut(s)	941, 1142
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	941, 1142
BmiI	GGNNCC	2 cut(s)	942, 1178
BmrFI	CCNGG	6 cut(s)	63, 432, 564, 762, 936, 1146
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	3 cut(s)	307, 366, 1173
BmtI	GCTAGC	3 cut(s)	821, 1005, 1038
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	158, 1082
BpuMI	CCSGG	2 cut(s)	63, 762
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	61, 563, 935
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	2 cut(s)	371, 414
Bse3DI	GCAATG	2 cut(s)	319, 546
BseBI	CCWGG	4 cut(s)	432, 564, 936, 1146
BseDI	CCNNGG	3 cut(s)	61, 563, 935
BseGI	GGATG	5 cut(s)	410, 886, 931, 966, 1164
BseMI	GCAATG	2 cut(s)	319, 546
BseMII	CTCAG	3 cut(s)	488, 708, 848
BseNI	ACTGG	2 cut(s)	371, 414
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	1050
BshFI	GGCC	4 cut(s)	56, 95, 335, 376
BsiHKAI	GWGCWC	3 cut(s)	628, 1015, 1107
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	63, 762
BsmAI	GTCTC	3 cut(s)	412, 432, 715
BsmI	GAATGC	2 cut(s)	1003, 1036
BsnI	GGCC	4 cut(s)	56, 95, 335, 376
Bso31I	GGTCTC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	628, 1015, 1107
Bsp143I	GATC	4 cut(s)	163, 640, 684, 1089
BspACI	CCGC	1 cut(s)	986
BspANI	GGCC	4 cut(s)	56, 95, 335, 376
BspCNI	CTCAG	3 cut(s)	487, 707, 847
BspLI	GGNNCC	2 cut(s)	942, 1178
BspMI	ACCTGC	1 cut(s)	515
BspOI	GCTAGC	3 cut(s)	821, 1005, 1038
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	1003
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	319, 546
BsrI	ACTGG	2 cut(s)	371, 414
BssECI	CCNNGG	3 cut(s)	61, 563, 935
BssMI	GATC	4 cut(s)	163, 640, 684, 1089
Bst2UI	CCWGG	4 cut(s)	432, 564, 936, 1146
Bst4CI	ACNGT	3 cut(s)	158, 211, 289
Bst6I	CTCTTC	2 cut(s)	1003, 1071
BstC8I	GCNNGC	9 cut(s)	186, 267, 355, 378, 582, 819, 1003, 1036, 1107
BstDEI	CTNAG	4 cut(s)	397, 474, 694, 834
BstF5I	GGATG	5 cut(s)	410, 886, 931, 966, 1164
BstKTI	GATC	4 cut(s)	166, 643, 687, 1092
BstMAI	GTCTC	3 cut(s)	412, 432, 715
BstMBI	GATC	4 cut(s)	163, 640, 684, 1089
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 341, 350, 516
BstNI	CCWGG	4 cut(s)	432, 564, 936, 1146
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	6 cut(s)	61, 430, 562, 760, 934, 1144
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	1050
BstV2I	GAAGAC	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	56, 95, 335, 376
BtsCI	GGATG	5 cut(s)	410, 886, 931, 966, 1164
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	9 cut(s)	186, 267, 355, 378, 582, 819, 1003, 1036, 1107
Cfr13I	GGNCC	2 cut(s)	941, 1142
CseI	GACGC	1 cut(s)	959
CsiI	ACCWGGT	2 cut(s)	430, 1144
Csp6I	GTAC	1 cut(s)	1066
CviAII	CATG	6 cut(s)	13, 115, 232, 350, 490, 1069
CviQI	GTAC	1 cut(s)	1066
DdeI	CTNAG	4 cut(s)	397, 474, 694, 834
DpnI	GATC	4 cut(s)	165, 642, 686, 1091
DpnII	GATC	4 cut(s)	163, 640, 684, 1089
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	1003, 1071
EarI	CTCTTC	2 cut(s)	1003, 1071
Ecl136II	GAGCTC	1 cut(s)	1013
Eco147I	AGGCCT	2 cut(s)	95, 376
Eco24I	GRGCYC	1 cut(s)	1015
Eco31I	GGTCTC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	941, 1142
Eco53kI	GAGCTC	1 cut(s)	1013
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	1013
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRI	GAATTC	2 cut(s)	279, 752
EcoRII	CCWGG	4 cut(s)	430, 562, 934, 1144
EcoRV	GATATC	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	1015
FaeI	CATG	6 cut(s)	16, 118, 235, 353, 493, 1072
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FatI	CATG	6 cut(s)	12, 114, 231, 349, 489, 1068
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	1039
FokI	GGATG	5 cut(s)	397, 893, 918, 973, 1151
FriOI	GRGCYC	1 cut(s)	1015
Fsp4HI	GCNGC	1 cut(s)	1039
FspBI	CTAG	8 cut(s)	302, 423, 449, 707, 818, 822, 1002, 1035
GluI	GCNGC	1 cut(s)	1039
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	56, 95, 335, 376
HapII	CCGG	2 cut(s)	63, 762
HgaI	GACGC	1 cut(s)	959
Hin1II	CATG	6 cut(s)	16, 118, 235, 353, 493, 1072
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	6 cut(s)	41, 76, 192, 244, 486, 955
HpaII	CCGG	2 cut(s)	63, 762
HphI	GGTGA	3 cut(s)	95, 677, 1127
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	9 cut(s)	238, 385, 477, 592, 697, 715, 837, 960, 1017
Hpy188III	TCNNGA	7 cut(s)	167, 260, 361, 749, 952, 974, 1093
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	8 cut(s)	17, 46, 85, 269, 366, 755, 780, 794
HpyCH4III	ACNGT	3 cut(s)	158, 211, 289
HpyCH4V	TGCA	9 cut(s)	32, 118, 198, 269, 312, 357, 626, 947, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 341, 350, 516
HpyF3I	CTNAG	4 cut(s)	397, 474, 694, 834
Hsp92II	CATG	6 cut(s)	16, 118, 235, 353, 493, 1072
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	163, 640, 684, 1089
LguI	GCTCTTC	1 cut(s)	1003
LmnI	GCTCC	2 cut(s)	567, 677
Lsp1109I	GCAGC	1 cut(s)	1050
LweI	GCATC	3 cut(s)	307, 366, 1173
MabI	ACCWGGT	2 cut(s)	430, 1144
MaeI	CTAG	8 cut(s)	302, 423, 449, 707, 818, 822, 1002, 1035
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	165, 642, 686, 1091
MboI	GATC	4 cut(s)	163, 640, 684, 1089
MboII	GAAGA	7 cut(s)	521, 809, 857, 882, 1020, 1088, 1108
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	628, 1015, 1107
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	4 cut(s)	270, 279, 752, 1128
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	186, 495
MnlI	CCTC	8 cut(s)	111, 182, 449, 483, 732, 843, 850, 1153
Mox20I	TGGCCA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	875, 1127
MslI	CAYNNNNRTG	2 cut(s)	1049, 1110
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	2 cut(s)	63, 762
MspR9I	CCNGG	6 cut(s)	63, 432, 564, 762, 936, 1146
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	1003, 1036
MvaI	CCWGG	4 cut(s)	432, 564, 936, 1146
MwoI	GCNNNNNNNGC	4 cut(s)	115, 341, 350, 516
NciI	CCSGG	2 cut(s)	63, 762
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	163, 640, 684, 1089
NheI	GCTAGC	3 cut(s)	817, 1001, 1034
NlaIII	CATG	6 cut(s)	16, 118, 235, 353, 493, 1072
NlaIV	GGNNCC	2 cut(s)	942, 1178
NmeAIII	GCCGAG	1 cut(s)	577
NspI	RCATGY	1 cut(s)	353
OliI	CACNNNNGTG	1 cut(s)	1049
PceI	AGGCCT	2 cut(s)	95, 376
PciSI	GCTCTTC	1 cut(s)	1003
PctI	GAATGC	2 cut(s)	1003, 1036
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	41, 76, 244, 955
PkrI	GCNGC	1 cut(s)	1040
PleI	GAGTC	2 cut(s)	186, 494
PpsI	GAGTC	2 cut(s)	186, 494
PpuMI	RGGWCCY	1 cut(s)	941
PshBI	ATTAAT	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	1015
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	4 cut(s)	430, 562, 934, 1144
PspGI	CCWGG	4 cut(s)	430, 562, 934, 1144
PspN4I	GGNNCC	2 cut(s)	942, 1178
PspPI	GGNCC	2 cut(s)	941, 1142
PspPPI	RGGWCCY	1 cut(s)	941
RsaI	GTAC	1 cut(s)	1067
RsaNI	GTAC	1 cut(s)	1066
RseI	CAYNNNNRTG	2 cut(s)	1049, 1110
SacI	GAGCTC	1 cut(s)	1015
SapI	GCTCTTC	1 cut(s)	1003
SaqAI	TTAA	2 cut(s)	875, 1127
SatI	GCNGC	1 cut(s)	1039
Sau3AI	GATC	4 cut(s)	163, 640, 684, 1089
Sau96I	GGNCC	2 cut(s)	941, 1142
SchI	GAGTC	2 cut(s)	186, 495
ScrFI	CCNGG	6 cut(s)	63, 432, 564, 762, 936, 1146
SduI	GDGCHC	3 cut(s)	628, 1015, 1107
SexAI	ACCWGGT	2 cut(s)	430, 1144
SfaNI	GCATC	3 cut(s)	307, 366, 1173
SinI	GGWCC	2 cut(s)	941, 1142
SmiMI	CAYNNNNRTG	2 cut(s)	1049, 1110
SmlI	CTYRAG	2 cut(s)	173, 1061
SmoI	CTYRAG	2 cut(s)	173, 1061
Sse9I	AATT	4 cut(s)	270, 279, 752, 1128
SseBI	AGGCCT	2 cut(s)	95, 376
SsiI	CCGC	1 cut(s)	986
SspMI	CTAG	8 cut(s)	302, 423, 449, 707, 818, 822, 1002, 1035
SstI	GAGCTC	1 cut(s)	1015
StuI	AGGCCT	2 cut(s)	95, 376
StyD4I	CCNGG	6 cut(s)	61, 430, 562, 760, 934, 1144
TaaI	ACNGT	3 cut(s)	158, 211, 289
TaqI	TCGA	3 cut(s)	190, 843, 894
TasI	AATT	4 cut(s)	270, 279, 752, 1128
TatI	WGTACW	1 cut(s)	1065
TfiI	GAWTC	4 cut(s)	41, 76, 244, 955
Tru1I	TTAA	2 cut(s)	875, 1127
Tru9I	TTAA	2 cut(s)	875, 1127
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	1038
TspDTI	ATGAA	2 cut(s)	65, 920
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	1 cut(s)	421
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	2 cut(s)	941, 1142
VspI	ATTAAT	1 cut(s)	875
XapI	RAATTY	2 cut(s)	279, 752
XceI	RCATGY	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	8 cut(s)	302, 423, 449, 707, 818, 822, 1002, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.