Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016131

Physical Location & Seq

Genomic Coordinates Reverse (-)

1765833 .. 1767707

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGGAGTGAAGGTATTGCTCCAGGAGATTCTACAATGAAGGCCAACGCCGGAAGAGCTACGATTCTGGCTCTTGGCAAGGCCTTCCCTCACCAGCTTGTCATGCAGGATTATCTGGTTGAGGGATATTTCAGAGATAACAACTGTGATGATCCAGACCTCAAGGAGAAGCTGGCTCGACTCTGCAAGACAACAACAGTTAAAACTCGGTACGTGGTCATGTCAGACGAGGTTCTAAAGAGATATCCAGAGCTTACACTTGAAGGTATCCCCACGGTGAAGCAAAGACTAGACATCTGCCATGATGCTGTAACACAGATGGCCATTGAAGCTTCACATGCTTGCATCAAGAACTGGGGAAGGCCTGCTTCGGACATAACACACTTGGTTTATGTGTCATCCAGTGAAGCTAGACTACCTGGTGGAGACCTTTACCTAGCAAGAGGACTTGAACTCTCCCCTCGGACTAAAAGAGTCATGCTTTACTTCTCAGGTTGCTCTGGTGGCGTGGCAGGTCTTCGTGTAGCAAAAGACATTGCCGAGAACAATCCATTGAGCAGAGTTCTACTTGCTACTTCTGAAACTACTATTATCGGCTACAAACCACCAAGTGCACATAGACCATATGATCTTGTTGGTGTAGCACTGTTTGGTGATGGGGCTGGAGCTATGATCATTGGCTCAGACCCTGAGCTAGTCTCCGAAAATCCTCTATTTGAGCTTCACACAGCGCTTCAGGAATTCTTGCCAGGCACGGAGAAGACCATAGACGGAAGACTCACAGAAGAAGGGATTAGTTTCAAGCTAGCAAGAGAGCTTCCTCAGATAATCGAAGATAATGTGGAGGGGTTCTGTGAAAGGTTGATGGATGTAGTTGGGTTTGATAAAAAGGAGTACAATAAGATGTTCTGGGCTGTTCATCCAGGGGGTCCTGCAATTTTGAACCGGATGGAGAAGCGTCTGGATTTGTTCCCAGAGAAGCTTGATGCTAGCAGAAGAGCTCTAATGGATTATGGGAATGCCAGCAGTAACACCATTGTGTATGTGCTTGAGTACATGATAGAAGAGAGCAAAAAGAAGAAGAAGAAGAAAGAGCAATCAAATGGTGAATGGGGTTTGATCCTGGCTTTTGGACCAGGTATAACTTTTGAGGGCATCCTAGCAAGGAACCTCACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0022607 GO:0030198 GO:0030638 GO:0030639 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0080110 GO:0085029 GO:0090439 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

394

Amino Acids

43.43

Weight (kDa)

5.92

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	13 - 230	2e-96	Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III	PF08545	165 - 229	2.2e-06	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C	PF02797	240 - 391	1.2e-61	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34850 AT4G34850
fragaria_vesca	FvH4_2g02110
malus_domestica	MD05G1115000.v1.1
prunus_persica	Prupe.8G159600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245621
rosa_laevigata	RLG00000015299
rosa_multiflora	Rmu_sc0001341.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215220
rosa_rugosa	Rorug05G0515100.1
rosa_samantha	Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana	Rw6G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AclWI	GGATC	2 cut(s)	146, 1114
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	212, 896, 1055
AfeI	AGCGCT	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	263, 329, 452, 802, 943
AjnI	CCWGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
AleI	CACNNNNGTG	1 cut(s)	1037
Alw21I	GWGCWC	2 cut(s)	616, 1003
Alw26I	GTCTC	2 cut(s)	420, 703
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	146, 1114
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor51HI	AGCGCT	1 cut(s)	732
AoxI	GGCC	4 cut(s)	42, 81, 321, 362
ApaLI	GTGCAC	1 cut(s)	612
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	929, 1133
AsuHPI	GGTGA	4 cut(s)	83, 289, 665, 1118
AsuNHI	GCTAGC	2 cut(s)	805, 989
AvaII	GGWCC	2 cut(s)	929, 1133
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	1003
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BbsI	GAAGAC	3 cut(s)	509, 767, 781
Bbv12I	GWGCWC	2 cut(s)	616, 1003
BccI	CCATC	4 cut(s)	313, 650, 859, 943
BciT130I	CCWGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	420, 703
BfaI	CTAG	7 cut(s)	290, 411, 437, 695, 806, 990, 1160
BfoI	RGCGCY	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	278
Bme1390I	CCNGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
Bme18I	GGWCC	2 cut(s)	929, 1133
BmgT120I	GGNCC	2 cut(s)	929, 1133
BmiI	GGNNCC	2 cut(s)	930, 1169
BmrFI	CCNGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	4 cut(s)	295, 354, 976, 1164
BmtI	GCTAGC	2 cut(s)	809, 993
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	3 cut(s)	509, 767, 781
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	2 cut(s)	6, 684
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	146, 1070
BsaAI	YACGTR	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	273, 461, 923
BsaWI	WCCGGW	1 cut(s)	945
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	359, 402
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
BseDI	CCNNGG	3 cut(s)	273, 461, 923
BseGI	GGATG	5 cut(s)	398, 874, 919, 954, 1155
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	504, 681, 696, 836
BseNI	ACTGG	2 cut(s)	359, 402
BseSI	GKGCMC	1 cut(s)	616
BshFI	GGCC	4 cut(s)	44, 83, 323, 364
BsiHKAI	GWGCWC	2 cut(s)	616, 1003
BsiSI	CCGG	2 cut(s)	51, 946
BsmAI	GTCTC	2 cut(s)	420, 703
BsmI	GAATGC	1 cut(s)	1024
BsnI	GGCC	4 cut(s)	44, 83, 323, 364
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	616, 1003
Bsp143I	GATC	4 cut(s)	151, 628, 672, 1119
BspANI	GGCC	4 cut(s)	44, 83, 323, 364
BspCNI	CTCAG	4 cut(s)	503, 682, 695, 835
BspLI	GGNNCC	2 cut(s)	930, 1169
BspMI	ACCTGC	1 cut(s)	503
BspOI	GCTAGC	2 cut(s)	809, 993
BspPI	GGATC	2 cut(s)	146, 1114
BspQI	GCTCTTC	2 cut(s)	49, 991
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	359, 402
BssECI	CCNNGG	3 cut(s)	273, 461, 923
BssMI	GATC	4 cut(s)	151, 628, 672, 1119
Bst2UI	CCWGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
Bst4CI	ACNGT	4 cut(s)	146, 199, 277, 648
Bst6I	CTCTTC	3 cut(s)	49, 991, 1059
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	6 cut(s)	174, 343, 366, 807, 991, 1024
BstDEI	CTNAG	4 cut(s)	490, 682, 690, 822
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	5 cut(s)	398, 874, 919, 954, 1155
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	4 cut(s)	154, 631, 675, 1122
BstMAI	GTCTC	2 cut(s)	420, 703
BstMBI	GATC	4 cut(s)	151, 628, 672, 1119
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 103, 329, 338, 504
BstNI	CCWGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
BstSLI	GKGCMC	1 cut(s)	616
BstV2I	GAAGAC	3 cut(s)	509, 767, 781
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	44, 83, 323, 364
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	5 cut(s)	398, 874, 919, 954, 1155
BtsIMutI	CAGTG	2 cut(s)	409, 644
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	6 cut(s)	174, 343, 366, 807, 991, 1024
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	929, 1133
CseI	GACGC	1 cut(s)	947
CsiI	ACCWGGT	2 cut(s)	418, 1135
Csp6I	GTAC	3 cut(s)	211, 895, 1054
CviAII	CATG	6 cut(s)	103, 220, 302, 338, 478, 1057
CviQI	GTAC	3 cut(s)	211, 895, 1054
DdeI	CTNAG	4 cut(s)	490, 682, 690, 822
DpnI	GATC	4 cut(s)	153, 630, 674, 1121
DpnII	GATC	4 cut(s)	151, 628, 672, 1119
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	3 cut(s)	49, 991, 1059
EarI	CTCTTC	3 cut(s)	49, 991, 1059
Ecl136II	GAGCTC	1 cut(s)	1001
Eco147I	AGGCCT	2 cut(s)	83, 364
Eco24I	GRGCYC	1 cut(s)	1003
Eco31I	GGTCTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	929, 1133
Eco47III	AGCGCT	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	1001
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
EcoRV	GATATC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	1003
FaeI	CATG	6 cut(s)	106, 223, 305, 341, 481, 1060
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	6 cut(s)	102, 219, 301, 337, 477, 1056
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	672
FokI	GGATG	5 cut(s)	385, 881, 906, 961, 1142
FriOI	GRGCYC	1 cut(s)	1003
FspBI	CTAG	7 cut(s)	290, 411, 437, 695, 806, 990, 1160
GlaI	GCGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	6, 684
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	4 cut(s)	44, 83, 323, 364
HapII	CCGG	2 cut(s)	51, 946
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	106, 223, 305, 341, 481, 1060
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HindIII	AAGCTT	2 cut(s)	330, 980
HinfI	GANTC	5 cut(s)	29, 64, 180, 474, 777
HpaII	CCGG	2 cut(s)	51, 946
HphI	GGTGA	4 cut(s)	83, 289, 665, 1118
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	8 cut(s)	134, 226, 373, 465, 580, 685, 703, 825
Hpy188III	TCNNGA	5 cut(s)	155, 248, 349, 737, 962
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	6 cut(s)	5, 34, 94, 257, 354, 782
HpyCH4III	ACNGT	4 cut(s)	146, 199, 277, 648
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	106, 186, 345, 614, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 103, 329, 338, 504
HpyF3I	CTNAG	4 cut(s)	490, 682, 690, 822
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	106, 223, 305, 341, 481, 1060
HspAI	GCGC	1 cut(s)	731
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	151, 628, 672, 1119
LguI	GCTCTTC	2 cut(s)	49, 991
LmnI	GCTCC	2 cut(s)	25, 665
LweI	GCATC	4 cut(s)	295, 354, 976, 1164
MabI	ACCWGGT	2 cut(s)	418, 1135
MaeI	CTAG	7 cut(s)	290, 411, 437, 695, 806, 990, 1160
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	310, 1028
MalI	GATC	4 cut(s)	153, 630, 674, 1121
MboI	GATC	4 cut(s)	151, 628, 672, 1119
MhlI	GDGCHC	2 cut(s)	616, 1003
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	740, 936
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	3 cut(s)	174, 483, 771
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	1037
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	2 cut(s)	51, 946
MspR9I	CCNGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
Mva1269I	GAATGC	1 cut(s)	1024
MvaI	CCWGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
MwoI	GCNNNNNNNGC	5 cut(s)	56, 103, 329, 338, 504
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	4 cut(s)	151, 628, 672, 1119
NheI	GCTAGC	2 cut(s)	805, 989
NlaIII	CATG	6 cut(s)	106, 223, 305, 341, 481, 1060
NlaIV	GGNNCC	2 cut(s)	930, 1169
NmeAIII	GCCGAG	1 cut(s)	565
NspI	RCATGY	1 cut(s)	341
OliI	CACNNNNGTG	1 cut(s)	1037
PceI	AGGCCT	2 cut(s)	83, 364
PciSI	GCTCTTC	2 cut(s)	49, 991
PctI	GAATGC	1 cut(s)	1024
PfeI	GAWTC	2 cut(s)	29, 64
PfoI	TCCNGGA	1 cut(s)	22
PleI	GAGTC	3 cut(s)	174, 482, 771
PpsI	GAGTC	3 cut(s)	174, 482, 771
Ppu21I	YACGTR	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	929
Psp124BI	GAGCTC	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
PspGI	CCWGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
PspN4I	GGNNCC	2 cut(s)	930, 1169
PspPI	GGNCC	2 cut(s)	929, 1133
PspPPI	RGGWCCY	1 cut(s)	929
PstNI	CAGNNNCTG	1 cut(s)	689
RsaI	GTAC	3 cut(s)	212, 896, 1055
RsaNI	GTAC	3 cut(s)	211, 895, 1054
RseI	CAYNNNNRTG	1 cut(s)	1037
SacI	GAGCTC	1 cut(s)	1003
SapI	GCTCTTC	2 cut(s)	49, 991
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	151, 628, 672, 1119
Sau96I	GGNCC	2 cut(s)	929, 1133
SchI	GAGTC	3 cut(s)	174, 483, 771
ScrFI	CCNGG	6 cut(s)	24, 420, 750, 924, 1124, 1137
SduI	GDGCHC	2 cut(s)	616, 1003
SexAI	ACCWGGT	2 cut(s)	418, 1135
SfaNI	GCATC	4 cut(s)	295, 354, 976, 1164
SinI	GGWCC	2 cut(s)	929, 1133
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	2 cut(s)	161, 1049
SmoI	CTYRAG	2 cut(s)	161, 1049
Sse9I	AATT	2 cut(s)	740, 936
SseBI	AGGCCT	2 cut(s)	83, 364
SspMI	CTAG	7 cut(s)	290, 411, 437, 695, 806, 990, 1160
SstI	GAGCTC	1 cut(s)	1003
StuI	AGGCCT	2 cut(s)	83, 364
StyD4I	CCNGG	6 cut(s)	22, 418, 748, 922, 1122, 1135
TaaI	ACNGT	4 cut(s)	146, 199, 277, 648
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	178, 831
TasI	AATT	2 cut(s)	740, 936
TatI	WGTACW	2 cut(s)	894, 1053
TfiI	GAWTC	2 cut(s)	29, 64
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	409, 651
TspDTI	ATGAA	2 cut(s)	53, 908
TspGWI	ACGGA	2 cut(s)	770, 786
TspRI	CASTG	2 cut(s)	409, 651
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	929, 1133
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	7 cut(s)	290, 411, 437, 695, 806, 990, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.