Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016131

Physical Location & Seq

Genomic Coordinates Forward (+)

23620487 .. 23622136

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAGTGAACATGTTGTTCAAGGAGGTTTCCCAATGAAGGCGAACGCCGGAAATGCCACGATTCTCGCACTCGGCAAGGCTTTCCCTCACCAGCTTGTCATGCAGGATTTTCTGGTTGATGGGTATTTCAAAGATACCAACAGTGATGATCCACAGCTTAAGCAGAAGCTGGCTCGACTCTGCAAAACAACAACAGTCAAAACTAGGTATGTGGTCATGTCAGAAGAGATTCTGGAAAAGTATCCAGAGCTTACAACTGAGGGCACACCAACTATAAAGCAAAGGCTACACATTTGCAATGAAGCTGTAACAAAGATGGCAATTGAAGCTTCACAAGCTTGCATCACGAAATGGGGGAGACCTACTTCAGATATAACCCACTTAGTCTATGTCTCGTCCAGTGAAGCTCGCCTCCCGGGTGGTGACCTTTACCTAGCGAAAGGGCTTGGACTCAGTCCCCAGACTAAAAGGGTCATGCTCTACTTCTCGGGCTGCTCGGGCGGTGTGGCTGGCGTTCGTGTTGCCAAAGACATTGCCGAGAACAATCCAGGAAGTAGAGTCCTGCTCGCTACTTCTGAAACCACTATCATTGGGTACAAACCACCAAGTGCAAACAGACCATATGATCTTGTTGGTGTTGCACTTTTTGGGGATGGTGCTGGAGCCATGATGATTGGCTCAGACCCCGAATTGGTCTCTGAAAACCCGCTGTTCGAACTTCACACAGCCTTACAAGAGTTCCTGCCTGGTACTGAGAAGACCATTGATGGAAGGGTCACAGAAGAAGGGATCAGCTTCAAGCTGGAAAGAGAGCTGCCTCAAATAATTGAAGATCACATTGAAGGATTCTGTGGGAGGCTGATGGGAGTTGTTGGATACGATAACAAGGAGTACAACAAGATGTTTTGGGCTGTCCATCCAGGAGGTCCGGCAATCTTGAACCGAATGGAGAAGCGTCTTGATTTGTCGCCAGAGAAGCTGAACGCGAGCAGACGAGCTCTGGCGGATTATGGCAACGCTAGCAGTAACACCATAGTGTATGTTCTGGAGTACATCATTGAAGAGAGCAAGAAGATGAAGAAGGAAGGGGAAGGAGATGGCGGATGGGGAATGATCCTGGCTTTTGGACCTGGAGTTACTTTTGAGGGAATTTTAGCAAGGAACCTTGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0022607 GO:0030198 GO:0030638 GO:0030639 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0080110 GO:0085029 GO:0090439 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

393

Amino Acids

42.73

Weight (kDa)

5.77

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	14 - 230	2.6e-100	Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C	PF02797	240 - 390	7.9e-58	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34850 AT4G34850
fragaria_vesca	FvH4_2g02110
malus_domestica	MD05G1115000.v1.1
prunus_persica	Prupe.8G159600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245621
rosa_laevigata	RLG00000015299
rosa_multiflora	Rmu_sc0001341.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215220
rosa_rugosa	Rorug05G0515100.1
rosa_samantha	Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana	Rw6G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	989
AciI	CCGC	4 cut(s)	504, 710, 1007, 1104
AclWI	GGATC	3 cut(s)	146, 800, 1111
AcsI	RAATTY	1 cut(s)	1152
AcuI	CTGAAG	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	4 cut(s)	599, 754, 896, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	40, 694
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	8 cut(s)	23, 133, 329, 802, 833, 845, 943, 1064
AjnI	CCWGG	5 cut(s)	550, 748, 922, 1119, 1132
AleI	CACNNNNGTG	1 cut(s)	1037
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	3 cut(s)	355, 400, 703
AlwI	GGATC	3 cut(s)	146, 800, 1111
AlwNI	CAGNNNCTG	1 cut(s)	172
Ama87I	CYCGRG	3 cut(s)	418, 490, 499
ApeKI	GCWGC	2 cut(s)	495, 817
ApoI	RAATTY	1 cut(s)	1152
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	929, 1130
AsuC2I	CCSGG	2 cut(s)	419, 420
AsuHPI	GGTGA	2 cut(s)	83, 437
AsuII	TTCGAA	1 cut(s)	717
AsuNHI	GCTAGC	1 cut(s)	1022
AvaI	CYCGRG	3 cut(s)	418, 490, 499
AvaII	GGWCC	2 cut(s)	929, 1130
BaeGI	GKGCMC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	1003
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	1003
BbvI	GCAGC	2 cut(s)	482, 804
BccI	CCATC	8 cut(s)	116, 313, 650, 764, 859, 927, 1094, 1101
BciT130I	CCWGG	5 cut(s)	552, 750, 924, 1121, 1134
BciVI	GTATCC	2 cut(s)	255, 872
BcnI	CCSGG	2 cut(s)	419, 420
BcoDI	GTCTC	3 cut(s)	355, 400, 703
BfaI	CTAG	3 cut(s)	207, 437, 1023
BfrI	CTTAAG	1 cut(s)	161
BfuI	GTATCC	2 cut(s)	255, 872
BisI	GCNGC	2 cut(s)	496, 818
BlsI	GCNGC	2 cut(s)	497, 819
Bme1390I	CCNGG	7 cut(s)	419, 420, 552, 750, 924, 1121, 1134
Bme18I	GGWCC	2 cut(s)	929, 1130
BmeT110I	CYCGRG	3 cut(s)	418, 490, 499
BmgT120I	GGNCC	2 cut(s)	929, 1130
BmiI	GGNNCC	2 cut(s)	667, 1166
BmrFI	CCNGG	7 cut(s)	419, 420, 552, 750, 924, 1121, 1134
BmsI	GCATC	1 cut(s)	354
BmtI	GCTAGC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	767
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	3 cut(s)	684, 1070, 1155
Bpu14I	TTCGAA	1 cut(s)	717
BpuMI	CCSGG	2 cut(s)	419, 420
BsaI	GGTCTC	2 cut(s)	355, 703
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 694
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	2 cut(s)	307, 534
BseBI	CCWGG	5 cut(s)	552, 750, 924, 1121, 1134
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	661, 919, 1112
BseLI	CCNNNNNNNGG	2 cut(s)	40, 694
BseMI	GCAATG	2 cut(s)	307, 534
BseMII	CTCAG	4 cut(s)	252, 469, 696, 747
BseNI	ACTGG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	482, 804
Bsh1236I	CGCG	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiHKCI	CYCGRG	3 cut(s)	418, 490, 499
BsiSI	CCGG	3 cut(s)	51, 419, 932
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	40, 694
BsmAI	GTCTC	3 cut(s)	355, 400, 703
BsmFI	GGGAC	1 cut(s)	444
Bso31I	GGTCTC	2 cut(s)	355, 703
BsoBI	CYCGRG	3 cut(s)	418, 490, 499
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	269, 1003
Bsp143I	GATC	5 cut(s)	151, 628, 792, 835, 1116
BspACI	CCGC	4 cut(s)	504, 710, 1007, 1104
BspCNI	CTCAG	4 cut(s)	253, 468, 695, 748
BspFNI	CGCG	1 cut(s)	989
BspLI	GGNNCC	2 cut(s)	667, 1166
BspOI	GCTAGC	1 cut(s)	1026
BspPI	GGATC	3 cut(s)	146, 800, 1111
BspT104I	TTCGAA	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	355, 703
BsrDI	GCAATG	2 cut(s)	307, 534
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	5 cut(s)	151, 628, 792, 835, 1116
Bst2UI	CCWGG	5 cut(s)	552, 750, 924, 1121, 1134
Bst4CI	ACNGT	2 cut(s)	146, 199
Bst6I	CTCTTC	2 cut(s)	222, 1059
BstAFI	CTTAAG	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	7 cut(s)	174, 343, 412, 514, 570, 991, 1024
BstDEI	CTNAG	5 cut(s)	261, 385, 455, 682, 756
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	661, 919, 1112
BstFNI	CGCG	1 cut(s)	989
BstKTI	GATC	5 cut(s)	154, 631, 795, 838, 1119
BstMAI	GTCTC	3 cut(s)	355, 400, 703
BstMBI	GATC	5 cut(s)	151, 628, 792, 835, 1116
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 103, 329, 338, 501, 979, 1023
BstNI	CCWGG	5 cut(s)	552, 750, 924, 1121, 1134
BstNSI	RCATGY	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	7 cut(s)	417, 418, 550, 748, 922, 1119, 1132
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	989
BstV1I	GCAGC	2 cut(s)	482, 804
BstV2I	GAAGAC	1 cut(s)	767
BsuI	GTATCC	2 cut(s)	255, 872
BtsCI	GGATG	3 cut(s)	661, 919, 1112
BtsIMutI	CAGTG	2 cut(s)	151, 409
Cac8I	GCNNGC	7 cut(s)	174, 343, 412, 514, 570, 991, 1024
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	929, 1130
Cfr9I	CCCGGG	1 cut(s)	418
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	4 cut(s)	598, 753, 895, 1054
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	5 cut(s)	14, 103, 220, 478, 670
CviQI	GTAC	4 cut(s)	598, 753, 895, 1054
DdeI	CTNAG	5 cut(s)	261, 385, 455, 682, 756
DpnI	GATC	5 cut(s)	153, 630, 794, 837, 1118
DpnII	GATC	5 cut(s)	151, 628, 792, 835, 1116
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	222, 1059
EarI	CTCTTC	2 cut(s)	222, 1059
EciI	GGCGGA	2 cut(s)	1022, 1119
Ecl136II	GAGCTC	1 cut(s)	1001
Eco24I	GRGCYC	1 cut(s)	1003
Eco31I	GGTCTC	2 cut(s)	355, 703
Eco47I	GGWCC	2 cut(s)	929, 1130
Eco53kI	GAGCTC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	3 cut(s)	418, 490, 499
Eco91I	GGTNACC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	1001
EcoO65I	GGTNACC	1 cut(s)	425
EcoRII	CCWGG	5 cut(s)	550, 748, 922, 1119, 1132
EcoT38I	GRGCYC	1 cut(s)	1003
FaeI	CATG	5 cut(s)	17, 106, 223, 481, 673
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	13, 102, 219, 477, 669
FauI	CCCGC	1 cut(s)	717
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	496, 818
FokI	GGATG	3 cut(s)	668, 906, 1119
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	2 cut(s)	496, 818
FspBI	CTAG	3 cut(s)	207, 437, 1023
GluI	GCNGC	2 cut(s)	496, 818
GsuI	CTGGAG	3 cut(s)	684, 1070, 1155
HapII	CCGG	3 cut(s)	51, 419, 932
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	5 cut(s)	17, 106, 223, 481, 673
HindIII	AAGCTT	2 cut(s)	330, 339
HinfI	GANTC	6 cut(s)	64, 180, 232, 453, 561, 849
HpaII	CCGG	3 cut(s)	51, 419, 932
HphI	GGTGA	2 cut(s)	83, 437
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	5 cut(s)	226, 373, 580, 685, 703
Hpy188III	TCNNGA	6 cut(s)	236, 248, 349, 940, 962, 1049
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	7 cut(s)	34, 768, 782, 839, 1078, 1082, 1088
HpyCH4III	ACNGT	2 cut(s)	146, 199
HpyCH4V	TGCA	6 cut(s)	106, 186, 300, 345, 614, 644
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 103, 329, 338, 501, 979, 1023
HpyF3I	CTNAG	5 cut(s)	261, 385, 455, 682, 756
Hsp92II	CATG	5 cut(s)	17, 106, 223, 481, 673
Kzo9I	GATC	5 cut(s)	151, 628, 792, 835, 1116
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	2 cut(s)	482, 804
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	207, 437, 1023
MaeIII	GTNAC	5 cut(s)	310, 425, 778, 1028, 1138
MalI	GATC	5 cut(s)	153, 630, 794, 837, 1118
MboI	GATC	5 cut(s)	151, 628, 792, 835, 1116
MboII	GAAGA	7 cut(s)	239, 772, 797, 845, 1076, 1087, 1093
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	269, 1003
MluCI	AATT	4 cut(s)	324, 692, 828, 1152
MlyI	GAGTC	3 cut(s)	174, 447, 570
MmeI	TCCRAC	1 cut(s)	856
MnlI	CCTC	8 cut(s)	20, 99, 256, 425, 831, 852, 920, 1141
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	1 cut(s)	712
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	3 cut(s)	51, 419, 932
MspR9I	CCNGG	7 cut(s)	419, 420, 552, 750, 924, 1121, 1134
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	5 cut(s)	552, 750, 924, 1121, 1134
MvnI	CGCG	1 cut(s)	989
MwoI	GCNNNNNNNGC	7 cut(s)	56, 103, 329, 338, 501, 979, 1023
NciI	CCSGG	2 cut(s)	419, 420
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	5 cut(s)	151, 628, 792, 835, 1116
NheI	GCTAGC	1 cut(s)	1022
NlaIII	CATG	5 cut(s)	17, 106, 223, 481, 673
NlaIV	GGNNCC	2 cut(s)	667, 1166
NmeAIII	GCCGAG	2 cut(s)	54, 565
NmuCI	GTSAC	2 cut(s)	425, 778
NspI	RCATGY	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	717
OliI	CACNNNNGTG	1 cut(s)	1037
PciI	ACATGT	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	64, 232, 849
PflFI	GACNNNGTC	1 cut(s)	456
PfoI	TCCNGGA	2 cut(s)	550, 922
PkrI	GCNGC	2 cut(s)	497, 819
PleI	GAGTC	3 cut(s)	174, 447, 569
PpsI	GAGTC	3 cut(s)	174, 447, 569
PscI	ACATGT	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	1003
Psp6I	CCWGG	5 cut(s)	550, 748, 922, 1119, 1132
PspEI	GGTNACC	1 cut(s)	425
PspGI	CCWGG	5 cut(s)	550, 748, 922, 1119, 1132
PspN4I	GGNNCC	2 cut(s)	667, 1166
PspPI	GGNCC	2 cut(s)	929, 1130
PstNI	CAGNNNCTG	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	456
RsaI	GTAC	4 cut(s)	599, 754, 896, 1055
RsaNI	GTAC	4 cut(s)	598, 753, 895, 1054
RseI	CAYNNNNRTG	1 cut(s)	1037
SacI	GAGCTC	1 cut(s)	1003
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	496, 818
Sau3AI	GATC	5 cut(s)	151, 628, 792, 835, 1116
Sau96I	GGNCC	2 cut(s)	929, 1130
SchI	GAGTC	3 cut(s)	174, 447, 570
ScrFI	CCNGG	7 cut(s)	419, 420, 552, 750, 924, 1121, 1134
SduI	GDGCHC	2 cut(s)	269, 1003
SfaNI	GCATC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	2 cut(s)	929, 1130
SmaI	CCCGGG	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	324, 692, 828, 1152
SsiI	CCGC	4 cut(s)	504, 710, 1007, 1104
SspMI	CTAG	3 cut(s)	207, 437, 1023
SstI	GAGCTC	1 cut(s)	1003
StyD4I	CCNGG	7 cut(s)	417, 418, 550, 748, 922, 1119, 1132
TaaI	ACNGT	2 cut(s)	146, 199
TaqI	TCGA	2 cut(s)	178, 717
TasI	AATT	4 cut(s)	324, 692, 828, 1152
TatI	WGTACW	2 cut(s)	894, 1053
TfiI	GAWTC	3 cut(s)	64, 232, 849
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	151, 409
TseFI	GTSAC	2 cut(s)	425, 778
TseI	GCWGC	2 cut(s)	495, 817
Tsp45I	GTSAC	2 cut(s)	425, 778
TspDTI	ATGAA	3 cut(s)	53, 318, 1094
TspMI	CCCGGG	1 cut(s)	418
TspRI	CASTG	2 cut(s)	151, 409
Tth111I	GACNNNGTC	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	929, 1130
XapI	RAATTY	1 cut(s)	1152
XceI	RCATGY	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	207, 437, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.