Rroxscaffold_7G00215220

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016131
Physical Location & Seq
Forward (+)
65851695 .. 65853075
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215220.1

Sequence Viewer

Length: 1056 bp
ATGGGGAGTGAAGGTATTGCACAAGGAGATTCTACAATGAAGGCCAACCCCGGAAAAGCTACGATTCTGGCTCTTGGGAAGGCCTTTCCTCACCAGCTTGTCATGCAGGATTTTCTGGTTGATGGATATTTCAAAGATACCAACTGTGATGATCCAGACCTCAAGGAGAAGCTGGCTCGACTCTGCAAGACAACGACAGTCAAAACTCGGTATGTGGTCATGTCAGATGAGATTCTAAAGAGATATCCAGAGCTTGCAATTGAAGGAATTCCCACCGTGAAGCAAAGACTAGACATTTGCAATGATGCTGTAACACGGATGGCCATTGAAGCTTCACATGCTTGCATCAAGAACTGGGGAAGGCCTGCTTCGGACATAACGCACTTGGTCTATGTCTCATCCACAAAAGACATTGCCGAGAACAATCCAGGGAGCAGAGTTCTGCTTGCTACTTCTGAAACTACTATTATCGGCTACAAACCACCAAGTGCACATAGACCATATGATCTTGTTGGTGTAGCACTCTTTGGTGATGGGGCTGGAGCTATGATCATTGGCTCAGACCCCAAGCTAGTCTCCGAAAAGCCTCTATTTGAGCTTCACACAGCGCTTCAGGAATTCTTGCCCGGCACGGAGAAAACCATAGATGGAAGGCTCACAGAAGAAGGGATTAGTTTCAAGCTAGCTAGAGAGCTTCCTCAGATAATCGAAGATAATGTGGAGGGGTTCTGTGGAAGATTAATGGATGTAGTTGGGTTCGATAACAAGGAGTACAATAAGATGTTCTGGGCTGTTCATCCAGGGGGTCCTGCAATCTTGAATCGGATGGAAAAGCGTCTGGATTTGTTTCCACAAAAGCTGAATGCTAGCAGAAGAGCTCTGATGGATTATGGGAATGCTAGCAGCAACACCATTGTGTATGTGCTTGAGTACATGATAGAAGAGAGCAAAAAGATCAAGAAGAAAGAGCACGCAGATGGTGAATGGGGTTTAATTCTGGCTTTTGGACCTGGTATAACTTTTGAGGGCATCCTTGCAAGGAACCTAACTATCTAA

Protein Analysis

351

Amino Acids

38.8

Weight (kDa)

5.89

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 13 - 135 4.8e-48 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_N PF00195 135 - 189 5.2e-23 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 199 - 349 4.2e-60 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34850 AT4G34850
fragaria_vesca FvH4_2g02110
malus_domestica MD05G1115000.v1.1
prunus_persica Prupe.8G159600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245621
rosa_laevigata RLG00000015299
rosa_multiflora Rmu_sc0001341.1_g000003
rosa_roxburghii Rroxscaffold_7G00215220
rosa_rugosa Rorug05G0515100.1
rosa_samantha Rh6AG029900 Rh6BG027200 Rh6CG026500 Rh6DG026000
rosa_wichuraiana Rw6G002550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 267, 617
AcuI CTGAAG 1 cut(s) 596
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 2 cut(s) 773, 932
AfeI AGCGCT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 133, 263, 329, 679, 820
AjnI CCWGG 3 cut(s) 427, 799, 1009
AleI CACNNNNGTG 1 cut(s) 914
Alw21I GWGCWC 3 cut(s) 493, 880, 972
Alw26I GTCTC 2 cut(s) 400, 580
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 609
AoxI GGCC 4 cut(s) 42, 81, 321, 362
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 903
ApoI RAATTY 2 cut(s) 267, 617
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AseI ATTAAT 1 cut(s) 740
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 2 cut(s) 806, 1007
AsuC2I CCSGG 2 cut(s) 51, 627
AsuHPI GGTGA 3 cut(s) 83, 542, 992
AsuNHI GCTAGC 3 cut(s) 682, 866, 899
AvaII GGWCC 2 cut(s) 806, 1007
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 880
Bbv12I GWGCWC 3 cut(s) 493, 880, 972
BbvI GCAGC 1 cut(s) 915
BccI CCATC 7 cut(s) 116, 313, 527, 641, 820, 877, 971
BciT130I CCWGG 3 cut(s) 429, 801, 1011
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 2 cut(s) 51, 627
BcoDI GTCTC 2 cut(s) 400, 580
BfaI CTAG 6 cut(s) 290, 572, 683, 687, 867, 900
BfoI RGCGCY 1 cut(s) 611
BisI GCNGC 1 cut(s) 904
BlsI GCNGC 1 cut(s) 905
Bme1390I CCNGG 5 cut(s) 51, 429, 627, 801, 1011
Bme18I GGWCC 2 cut(s) 806, 1007
BmgT120I GGNCC 2 cut(s) 806, 1007
BmiI GGNNCC 2 cut(s) 807, 1043
BmrFI CCNGG 5 cut(s) 51, 429, 627, 801, 1011
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 295, 354, 1038
BmtI GCTAGC 3 cut(s) 686, 870, 903
BmuI ACTGGG 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 146, 947
BpuMI CCSGG 2 cut(s) 51, 627
BsaJI CCNNGG 3 cut(s) 49, 428, 800
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 2 cut(s) 307, 411
BseBI CCWGG 3 cut(s) 429, 801, 1011
BseDI CCNNGG 3 cut(s) 49, 428, 800
BseGI GGATG 6 cut(s) 324, 398, 751, 796, 831, 1029
BseMI GCAATG 2 cut(s) 307, 411
BseMII CTCAG 2 cut(s) 573, 713
BseNI ACTGG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 915
BshFI GGCC 4 cut(s) 44, 83, 323, 364
BsiHKAI GWGCWC 3 cut(s) 493, 880, 972
BsiSI CCGG 2 cut(s) 51, 627
BsmAI GTCTC 2 cut(s) 400, 580
BsmI GAATGC 2 cut(s) 868, 901
BsnI GGCC 4 cut(s) 44, 83, 323, 364
Bsp1286I GDGCHC 3 cut(s) 493, 880, 972
Bsp143I GATC 4 cut(s) 151, 505, 549, 954
BspANI GGCC 4 cut(s) 44, 83, 323, 364
BspCNI CTCAG 2 cut(s) 572, 712
BspLI GGNNCC 2 cut(s) 807, 1043
BspOI GCTAGC 3 cut(s) 686, 870, 903
BspPI GGATC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 868
BsrDI GCAATG 2 cut(s) 307, 411
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 49, 428, 800
BssMI GATC 4 cut(s) 151, 505, 549, 954
Bst2UI CCWGG 3 cut(s) 429, 801, 1011
Bst4CI ACNGT 3 cut(s) 146, 199, 277
Bst6I CTCTTC 2 cut(s) 868, 936
BstC8I GCNNGC 9 cut(s) 174, 255, 343, 366, 447, 684, 868, 901, 972
BstDEI CTNAG 2 cut(s) 559, 699
BstF5I GGATG 6 cut(s) 324, 398, 751, 796, 831, 1029
BstH2I RGCGCY 1 cut(s) 611
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 4 cut(s) 154, 508, 552, 957
BstMAI GTCTC 2 cut(s) 400, 580
BstMBI GATC 4 cut(s) 151, 505, 549, 954
BstMWI GCNNNNNNNGC 3 cut(s) 103, 329, 338
BstNI CCWGG 3 cut(s) 429, 801, 1011
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 5 cut(s) 49, 427, 625, 799, 1009
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 915
BsuRI GGCC 4 cut(s) 44, 83, 323, 364
BtsCI GGATG 6 cut(s) 324, 398, 751, 796, 831, 1029
Cac8I GCNNGC 9 cut(s) 174, 255, 343, 366, 447, 684, 868, 901, 972
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 806, 1007
CseI GACGC 1 cut(s) 824
CsiI ACCWGGT 1 cut(s) 1009
Csp6I GTAC 2 cut(s) 772, 931
CviAII CATG 4 cut(s) 103, 220, 338, 934
CviQI GTAC 2 cut(s) 772, 931
DdeI CTNAG 2 cut(s) 559, 699
DpnI GATC 4 cut(s) 153, 507, 551, 956
DpnII GATC 4 cut(s) 151, 505, 549, 954
DraIII CACNNNGTG 1 cut(s) 488
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 868, 936
EarI CTCTTC 2 cut(s) 868, 936
Ecl136II GAGCTC 1 cut(s) 878
Eco147I AGGCCT 2 cut(s) 83, 364
Eco24I GRGCYC 1 cut(s) 880
Eco32I GATATC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 806, 1007
Eco47III AGCGCT 1 cut(s) 609
Eco53kI GAGCTC 1 cut(s) 878
Eco57I CTGAAG 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 878
EcoO109I RGGNCCY 1 cut(s) 806
EcoRI GAATTC 2 cut(s) 267, 617
EcoRII CCWGG 3 cut(s) 427, 799, 1009
EcoRV GATATC 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 880
FaeI CATG 4 cut(s) 106, 223, 341, 937
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FatI CATG 4 cut(s) 102, 219, 337, 933
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 904
FokI GGATG 6 cut(s) 331, 385, 758, 783, 838, 1016
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 1 cut(s) 904
FspBI CTAG 6 cut(s) 290, 572, 683, 687, 867, 900
GlaI GCGC 1 cut(s) 609
GluI GCNGC 1 cut(s) 904
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 611
HaeIII GGCC 4 cut(s) 44, 83, 323, 364
HapII CCGG 2 cut(s) 51, 627
HgaI GACGC 1 cut(s) 824
HhaI GCGC 1 cut(s) 610
Hin1II CATG 4 cut(s) 106, 223, 341, 937
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 5 cut(s) 29, 64, 180, 232, 820
HpaII CCGG 2 cut(s) 51, 627
HphI GGTGA 3 cut(s) 83, 542, 992
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 8 cut(s) 226, 373, 457, 562, 580, 702, 825, 882
Hpy188III TCNNGA 7 cut(s) 155, 248, 349, 614, 817, 839, 958
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 7 cut(s) 5, 34, 73, 257, 354, 645, 659
HpyCH4III ACNGT 3 cut(s) 146, 199, 277
HpyCH4V TGCA 9 cut(s) 20, 106, 186, 257, 300, 345, 491, 812, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 329, 338
HpyF3I CTNAG 2 cut(s) 559, 699
Hsp92II CATG 4 cut(s) 106, 223, 341, 937
HspAI GCGC 1 cut(s) 608
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 4 cut(s) 151, 505, 549, 954
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 2 cut(s) 432, 542
Lsp1109I GCAGC 1 cut(s) 915
LweI GCATC 3 cut(s) 295, 354, 1038
MabI ACCWGGT 1 cut(s) 1009
MaeI CTAG 6 cut(s) 290, 572, 683, 687, 867, 900
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 153, 507, 551, 956
MboI GATC 4 cut(s) 151, 505, 549, 954
MboII GAAGA 6 cut(s) 674, 722, 747, 885, 953, 973
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 3 cut(s) 493, 880, 972
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 258, 267, 617, 993
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 6 cut(s) 99, 170, 597, 708, 715, 1018
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 740, 992
MslI CAYNNNNRTG 2 cut(s) 914, 975
Msp20I TGGCCA 1 cut(s) 323
MspI CCGG 2 cut(s) 51, 627
MspR9I CCNGG 5 cut(s) 51, 429, 627, 801, 1011
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 868, 901
MvaI CCWGG 3 cut(s) 429, 801, 1011
MwoI GCNNNNNNNGC 3 cut(s) 103, 329, 338
NciI CCSGG 2 cut(s) 51, 627
NdeI CATATG 1 cut(s) 502
NdeII GATC 4 cut(s) 151, 505, 549, 954
NheI GCTAGC 3 cut(s) 682, 866, 899
NlaIII CATG 4 cut(s) 106, 223, 341, 937
NlaIV GGNNCC 2 cut(s) 807, 1043
NmeAIII GCCGAG 1 cut(s) 442
NspI RCATGY 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 914
PceI AGGCCT 2 cut(s) 83, 364
PciSI GCTCTTC 1 cut(s) 868
PctI GAATGC 2 cut(s) 868, 901
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 4 cut(s) 29, 64, 232, 820
PkrI GCNGC 1 cut(s) 905
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PpuMI RGGWCCY 1 cut(s) 806
PshBI ATTAAT 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 880
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 3 cut(s) 427, 799, 1009
PspGI CCWGG 3 cut(s) 427, 799, 1009
PspN4I GGNNCC 2 cut(s) 807, 1043
PspPI GGNCC 2 cut(s) 806, 1007
PspPPI RGGWCCY 1 cut(s) 806
RsaI GTAC 2 cut(s) 773, 932
RsaNI GTAC 2 cut(s) 772, 931
RseI CAYNNNNRTG 2 cut(s) 914, 975
SacI GAGCTC 1 cut(s) 880
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 2 cut(s) 740, 992
SatI GCNGC 1 cut(s) 904
Sau3AI GATC 4 cut(s) 151, 505, 549, 954
Sau96I GGNCC 2 cut(s) 806, 1007
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 5 cut(s) 51, 429, 627, 801, 1011
SduI GDGCHC 3 cut(s) 493, 880, 972
SexAI ACCWGGT 1 cut(s) 1009
SfaNI GCATC 3 cut(s) 295, 354, 1038
SinI GGWCC 2 cut(s) 806, 1007
SmiMI CAYNNNNRTG 2 cut(s) 914, 975
SmlI CTYRAG 2 cut(s) 161, 926
SmoI CTYRAG 2 cut(s) 161, 926
Sse9I AATT 4 cut(s) 258, 267, 617, 993
SseBI AGGCCT 2 cut(s) 83, 364
SspMI CTAG 6 cut(s) 290, 572, 683, 687, 867, 900
SstI GAGCTC 1 cut(s) 880
StuI AGGCCT 2 cut(s) 83, 364
StyD4I CCNGG 5 cut(s) 49, 427, 625, 799, 1009
TaaI ACNGT 3 cut(s) 146, 199, 277
TaqI TCGA 3 cut(s) 178, 708, 759
TasI AATT 4 cut(s) 258, 267, 617, 993
TatI WGTACW 2 cut(s) 771, 930
TfiI GAWTC 4 cut(s) 29, 64, 232, 820
Tru1I TTAA 2 cut(s) 740, 992
Tru9I TTAA 2 cut(s) 740, 992
TseI GCWGC 1 cut(s) 903
TspDTI ATGAA 2 cut(s) 53, 785
TspGWI ACGGA 2 cut(s) 331, 647
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 806, 1007
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 2 cut(s) 267, 617
XceI RCATGY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 6 cut(s) 290, 572, 683, 687, 867, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.