AT4G35020
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016490
Physical Location & Seq
Forward (+)
16672192 .. 16674789
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35020.3

Sequence Viewer

Length: 597 bp
ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACTTGTCTTCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCGCCTGCTTATATCGAATGCAGTGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTGATGCGGCTATCAAGGTCGTTCTCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAATCTCAGAAAGGTTGTTCTATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

198

Amino Acids

21.73

Weight (kDa)

9.37

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 7.9e-51 Ras family
Roc PF08477 8 - 121 1e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35020 AT4G35020 AT4G35020
fragaria_vesca FvH4_2g01250
malus_domestica MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica Prupe.8G165000_v2.0.a1
pyrus_communis pycom05g11530
rosa_chinensis RchiOBHm_Chr6g0251911
rosa_multiflora Rmu_ssc0000303.1_g000013
rosa_roxburghii Rroxscaffold_7G00216310
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014200
rosa_wichuraiana Rw6G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 422
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 228, 420, 515
AcyI GRCGYC 1 cut(s) 455
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 2 cut(s) 325, 397
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 5 cut(s) 222, 272, 276, 358, 445
AluI AGCT 5 cut(s) 222, 272, 276, 358, 445
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 440
AsuNHI GCTAGC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 454
BbsI GAAGAC 2 cut(s) 56, 232
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 2 cut(s) 143, 344
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 327, 399
BciVI GTATCC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 81, 273
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 458
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 327, 399
BmiI GGNNCC 2 cut(s) 303, 456
BmrFI CCNGG 2 cut(s) 327, 399
BmsI GCATC 1 cut(s) 502
BmtI GCTAGC 1 cut(s) 276
BpiI GAAGAC 2 cut(s) 56, 232
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 96, 397
BseBI CCWGG 2 cut(s) 327, 399
BseDI CCNNGG 2 cut(s) 96, 397
BseGI GGATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 302, 437, 587
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 2 cut(s) 251, 476
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 3 cut(s) 228, 420, 515
BspCNI CTCAG 3 cut(s) 303, 436, 586
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 303, 456
BspMAI CTGCAG 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 96, 397
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 327, 399
Bst4CI ACNGT 3 cut(s) 34, 44, 115
Bst6I CTCTTC 1 cut(s) 557
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 274, 459
BstDEI CTNAG 4 cut(s) 209, 311, 423, 573
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 327, 399
BstSCI CCNGG 2 cut(s) 325, 397
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 228
BstV2I GAAGAC 2 cut(s) 56, 232
BsuI GTATCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 339
BtsI GCAGTG 2 cut(s) 481, 510
BtsIMutI CAGTG 4 cut(s) 30, 136, 481, 510
Cac8I GCNNGC 2 cut(s) 274, 459
CfoI GCGC 1 cut(s) 457
CviJI RGCY 7 cut(s) 222, 272, 276, 358, 445, 518, 538
CviKI_1 RGCY 7 cut(s) 222, 272, 276, 358, 445, 518, 538
DdeI CTNAG 4 cut(s) 209, 311, 423, 573
DinI GGCGCC 1 cut(s) 456
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 325, 397
EgeI GGCGCC 1 cut(s) 456
EheI GGCGCC 1 cut(s) 456
FaiI YATR 5 cut(s) 105, 279, 321, 465, 590
FalI AAGNNNNNCTT 2 cut(s) 368, 400
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 81, 273
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 458
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 455
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 356
HphI GGTGA 1 cut(s) 440
Hpy188I TCNGA 2 cut(s) 576, 596
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 3 cut(s) 34, 44, 115
HpyCH4V TGCA 5 cut(s) 185, 233, 251, 474, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 4 cut(s) 209, 311, 423, 573
Hsp92I GRCGYC 1 cut(s) 455
HspAI GCGC 1 cut(s) 455
KasI GGCGCC 1 cut(s) 454
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 9 cut(s) 171, 312, 318, 339, 384, 410, 411, 471, 548
LweI GCATC 1 cut(s) 502
MaeI CTAG 2 cut(s) 81, 273
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 422
MboI GATC 1 cut(s) 361
MboII GAAGA 8 cut(s) 56, 232, 356, 443, 565, 568, 571, 574
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 2 cut(s) 124, 380
Mly113I GGCGCC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 31, 328
MnlI CCTC 2 cut(s) 187, 353
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 327, 399
Mva1269I GAATGC 2 cut(s) 251, 476
MvaI CCWGG 2 cut(s) 327, 399
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 273
NarI GGCGCC 1 cut(s) 455
NdeII GATC 1 cut(s) 361
NheI GCTAGC 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 303, 456
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 399
PctI GAATGC 2 cut(s) 251, 476
PkrI GCNGC 1 cut(s) 517
PluTI GGCGCC 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 325, 397
PspGI CCWGG 2 cut(s) 325, 397
PspN4I GGNNCC 2 cut(s) 303, 456
PstI CTGCAG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 399
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 327, 399
SduI GDGCHC 1 cut(s) 396
SetI ASST 9 cut(s) 17, 217, 224, 274, 278, 360, 447, 528, 583
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 2 cut(s) 124, 380
SsiI CCGC 3 cut(s) 228, 420, 515
SspDI GGCGCC 1 cut(s) 454
SspMI CTAG 2 cut(s) 81, 273
StyD4I CCNGG 2 cut(s) 325, 397
TaaI ACNGT 3 cut(s) 34, 44, 115
TaqI TCGA 3 cut(s) 120, 367, 468
TasI AATT 2 cut(s) 124, 380
TauI GCSGC 1 cut(s) 518
TscAI CASTG 4 cut(s) 37, 136, 481, 510
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 37, 136, 481, 510
XspI CTAG 2 cut(s) 81, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.