Rw6G001550
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016490
Physical Location & Seq
Reverse (-)
2391283 .. 2393949
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001550.1

Sequence Viewer

Length: 669 bp
ATGAGTGCGTCCAGGTTCATAAAGTGTGTCACAGTTGGGGATGGAGCGGTGGGCAAGACTTGTATGCTCATCTCTTACACCAGCAACACTTCCCAACGTTTGTTGATATACGAGGTTGAATTTATAGAGAATGATTGTGATTGTCTTTCTTTTGTTGCCACATGTGAGCAGGATTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGGAGCACAGTGAACTTGGGGTTGTGGGATACTGCTGGGCAGGAGGATTACAATAGACTAAGACCATTGAGCTACCGTGGGGCAGATGTGTTCTTACTTGCATTCTCTCTAATCAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAAGCATTATGCACCTGGTGTTCCAATTATTCTTGTTGGAACGAAGCTTGATCTTCGCGATGACAAGCAGTTCTTAACTGATCACCCTGGTGCAGTGCCAATTACCACAGCGCAGGGAGAGGAATTAAAAAAGCTGATTGGAGCTCCGATTTACATAGAATGTAGCTCGAAAACACAGCAGAACGTGAAAGCTGTCTTTGATGCCGCCATCAAAGTGGTTCTGCAGCCACCAAAGCAGAAGAAGAAAAAGAAGAGAAAGGCAAATAATGCCTGCTCCATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

222

Amino Acids

24.52

Weight (kDa)

8.39

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Roc PF08477 8 - 145 8.4e-17 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 56 - 202 1.2e-36 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35020 AT4G35020 AT4G35020
fragaria_vesca FvH4_2g01250
malus_domestica MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica Prupe.8G165000_v2.0.a1
pyrus_communis pycom05g11530
rosa_chinensis RchiOBHm_Chr6g0251911
rosa_multiflora Rmu_ssc0000303.1_g000013
rosa_roxburghii Rroxscaffold_7G00216310
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014200
rosa_wichuraiana Rw6G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 441
AciI CCGC 2 cut(s) 47, 588
AclI AACGTT 1 cut(s) 97
AcsI RAATTY 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 2 cut(s) 119, 385
AjnI CCWGG 3 cut(s) 11, 397, 469
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 7 cut(s) 294, 348, 430, 517, 527, 549, 575
AluI AGCT 7 cut(s) 294, 348, 430, 517, 527, 549, 575
Alw21I GWGCWC 2 cut(s) 230, 529
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 607
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 496
AsuHPI GGTGA 1 cut(s) 458
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 230, 529
BbvI GCAGC 1 cut(s) 619
BccI CCATC 3 cut(s) 35, 215, 599
BciT130I CCWGG 3 cut(s) 13, 399, 471
BciVI GTATCC 1 cut(s) 244
BclI TGATCA 1 cut(s) 463
BfmI CTRYAG 1 cut(s) 605
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 2 cut(s) 588, 608
BlsI GCNGC 2 cut(s) 589, 609
Bme1390I CCNGG 3 cut(s) 13, 399, 471
BmrFI CCNGG 3 cut(s) 13, 399, 471
BmsI GCATC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 298, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 369
BseBI CCWGG 3 cut(s) 13, 399, 471
BseDI CCNNGG 2 cut(s) 298, 469
BseGI GGATG 2 cut(s) 46, 226
BseLI CCNNNNNNNGG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 230, 529
BslI CCNNNNNNNGG 1 cut(s) 369
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 230, 529
Bsp143I GATC 2 cut(s) 433, 463
Bsp68I TCGCGA 1 cut(s) 441
BspACI CCGC 2 cut(s) 47, 588
BspANI GGCC 1 cut(s) 344
BspFNI CGCG 1 cut(s) 441
BspMAI CTGCAG 1 cut(s) 609
BsrBI CCGCTC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 298, 469
BssMI GATC 2 cut(s) 433, 463
Bst2UI CCWGG 3 cut(s) 13, 399, 471
Bst4CI ACNGT 4 cut(s) 34, 187, 232, 299
Bst6I CTCTTC 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 346, 655
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 46, 226
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 436, 466
BstMBI GATC 2 cut(s) 433, 463
BstMWI GCNNNNNNNGC 3 cut(s) 345, 616, 650
BstNI CCWGG 3 cut(s) 13, 399, 471
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 11, 397, 469
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 598
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 46, 226
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 208, 237, 483
BtuMI TCGCGA 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 346, 655
CfoI GCGC 1 cut(s) 496
CsiI ACCWGGT 1 cut(s) 397
CviAII CATG 1 cut(s) 162
CviJI RGCY 9 cut(s) 294, 344, 348, 430, 517, 527, 549, 575, 610
CviKI_1 RGCY 9 cut(s) 294, 344, 348, 430, 517, 527, 549, 575, 610
DdeI CTNAG 1 cut(s) 281
DpnI GATC 2 cut(s) 435, 465
DpnII GATC 2 cut(s) 433, 463
DraIII CACNNNGTG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Ecl136II GAGCTC 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 11, 397, 469
EcoT38I GRGCYC 1 cut(s) 529
FaeI CATG 1 cut(s) 165
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 2 cut(s) 588, 608
FokI GGATG 2 cut(s) 53, 233
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 588, 608
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 588, 608
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 344
HhaI GCGC 1 cut(s) 496
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 1 cut(s) 373
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 2 cut(s) 377, 440
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 4 cut(s) 34, 187, 232, 299
HpyCH4IV ACGT 2 cut(s) 97, 567
HpyCH4V TGCA 5 cut(s) 206, 323, 395, 476, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 616, 650
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 97, 567
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 2 cut(s) 433, 463
LmnI GCTCC 5 cut(s) 44, 225, 524, 532, 662
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 1 cut(s) 574
MabI ACCWGGT 1 cut(s) 397
MaeII ACGT 2 cut(s) 97, 567
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 435, 465
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 433, 463
MboII GAAGA 4 cut(s) 428, 634, 637, 646
MhlI GDGCHC 2 cut(s) 230, 529
MluCI AATT 6 cut(s) 119, 196, 380, 408, 483, 506
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 3 cut(s) 106, 259, 496
MseI TTAA 2 cut(s) 458, 509
MslI CAYNNNNRTG 2 cut(s) 471, 596
MspR9I CCNGG 3 cut(s) 13, 399, 471
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 3 cut(s) 13, 399, 471
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 3 cut(s) 345, 616, 650
NdeII GATC 2 cut(s) 433, 463
NlaIII CATG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 441
NspI RCATGY 1 cut(s) 165
OliI CACNNNNGTG 1 cut(s) 471
PciI ACATGT 1 cut(s) 161
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 2 cut(s) 589, 609
PscI ACATGT 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 529
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 3 cut(s) 11, 397, 469
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 3 cut(s) 11, 397, 469
PstI CTGCAG 1 cut(s) 609
RruI TCGCGA 1 cut(s) 441
RseI CAYNNNNRTG 2 cut(s) 471, 596
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 458, 509
SatI GCNGC 2 cut(s) 588, 608
Sau3AI GATC 2 cut(s) 433, 463
ScrFI CCNGG 3 cut(s) 13, 399, 471
SduI GDGCHC 2 cut(s) 230, 529
SexAI ACCWGGT 1 cut(s) 397
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 471, 596
Sse9I AATT 6 cut(s) 119, 196, 380, 408, 483, 506
SsiI CCGC 2 cut(s) 47, 588
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 11, 397, 469
TaaI ACNGT 4 cut(s) 34, 187, 232, 299
TaiI ACGT 2 cut(s) 100, 570
TaqI TCGA 1 cut(s) 551
TasI AATT 6 cut(s) 119, 196, 380, 408, 483, 506
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 2 cut(s) 458, 509
Tru9I TTAA 2 cut(s) 458, 509
TscAI CASTG 3 cut(s) 208, 237, 483
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 607
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 366
TspRI CASTG 3 cut(s) 208, 237, 483
Van91I CCANNNNNTGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.