Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016490

Physical Location & Seq

Genomic Coordinates Forward (+)

15141345 .. 15144396

Gene Structure 3052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTGCGTTATACAACAATGTGAAAGTTACACACAACTTCACGTGACAGTGACACTGGCAAGAGCTGGCTCTTTTAGGCCCAGCCCCCTTCATCTTTCCCTTCCCAACCCGCTCTCTGGGTCTCAAAGACAAAACTTGTCTGGATTGTGGGGATTAAAGAAATCAGAAACCTCTGCTGTATTTTGGATTAGGGTTTTTGTGGAAGCACAAGTAGAAGAAGGAAGAGGCAGAGTTGGGTGGAGAATGAGTGCCTCCAGGTTCATAAAGTGTGTCACAGTTGGGGATGGAGCTGTGGGAAAAACCTGTATGCTCATCTCCTACACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTTGACAATTTCAGTGCAAATGTTGTTGTGGATGGGAGCACCGTTAATTTGGGGTTGTGGGATACTGCTGGGCAGGAAGATTACAATAGATTAAGACCGTTGAGCTACCGTGGGGCAGATGTATTCCTACTTGCATTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGGTTCCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATTATTCTTGTTGGAACTAAGCTCGATCTTCGAGATGACAAGCAGTTCTTTGTAGATCACCCTGGTGCAGTGCCAATTACCACAGCGCAGGGAGAGGAACTAAGGAAGCTGATTGGGGCTCCGGTTTACATAGAATGCAGTTCAAAAACACAGCAGAATGTGAAAGCAGTCTTTGATGCAGCCATTAAAGTGGTTCTCCAGCCACCAAAGCAGAAGAAAAAGAAGAGAAAGGCACAGAAGGCGTGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

279

Amino Acids

30.74

Weight (kDa)

9.48

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	89 - 259	9e-49	Ras family
Roc	PF08477	89 - 202	6.6e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35020 AT4G35020 AT4G35020
fragaria_vesca	FvH4_2g01250
malus_domestica	MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica	Prupe.8G165000_v2.0.a1
pyrus_communis	pycom05g11530
rosa_chinensis	RchiOBHm_Chr6g0251911
rosa_multiflora	Rmu_ssc0000303.1_g000013
rosa_roxburghii	Rroxscaffold_7G00216310
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014200
rosa_wichuraiana	Rw6G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	116, 540
AgsI	TTSAA	1 cut(s)	723
AjnI	CCWGG	3 cut(s)	254, 568, 640
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	6 cut(s)	65, 290, 465, 519, 601, 688
AluI	AGCT	6 cut(s)	65, 290, 465, 519, 601, 688
Alw21I	GWGCWC	2 cut(s)	401, 827
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	77, 513
ApeKI	GCWGC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	700
BbrPI	CACGTG	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	401, 827
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	2 cut(s)	278, 386
BciT130I	CCWGG	3 cut(s)	256, 570, 642
BciVI	GTATCC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	3 cut(s)	256, 570, 642
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	546, 699
BmrFI	CCNGG	3 cut(s)	256, 570, 642
BmsI	GCATC	1 cut(s)	745
BpmI	CTGGAG	2 cut(s)	238, 761
BsaAI	YACGTR	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	339, 469, 640
BsaWI	WCCGGW	1 cut(s)	700
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 540
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	256, 570, 642
BseDI	CCNNGG	3 cut(s)	339, 469, 640
BseGI	GGATG	2 cut(s)	289, 397
BseLI	CCNNNNNNNGG	2 cut(s)	116, 540
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	770
BseYI	CCCAGC	2 cut(s)	80, 428
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	2 cut(s)	79, 515
BsiHKAI	GWGCWC	2 cut(s)	401, 827
BsiSI	CCGG	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	116, 540
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	2 cut(s)	494, 719
BsnI	GGCC	2 cut(s)	79, 515
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	401, 700, 827
Bsp143I	GATC	2 cut(s)	604, 634
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	79, 515
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	546, 699
BspTNI	GGTCTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	339, 469, 640
BssMI	GATC	2 cut(s)	604, 634
Bst2UI	CCWGG	3 cut(s)	256, 570, 642
Bst4CI	ACNGT	6 cut(s)	49, 277, 358, 403, 459, 470
Bst6I	CTCTTC	2 cut(s)	217, 797
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	67, 517, 823
BstDEI	CTNAG	3 cut(s)	549, 597, 680
BstDSI	CCRYGG	2 cut(s)	339, 469
BstF5I	GGATG	2 cut(s)	289, 397
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	2 cut(s)	607, 637
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	604, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	516, 787, 818
BstNI	CCWGG	3 cut(s)	256, 570, 642
BstSCI	CCNGG	3 cut(s)	254, 568, 640
BstV1I	GCAGC	1 cut(s)	770
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	79, 515
BtgI	CCRYGG	2 cut(s)	339, 469
BtsCI	GGATG	2 cut(s)	289, 397
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	53, 54, 379, 654
Cac8I	GCNNGC	3 cut(s)	67, 517, 823
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	568
DdeI	CTNAG	3 cut(s)	549, 597, 680
DpnI	GATC	2 cut(s)	606, 636
DpnII	GATC	2 cut(s)	604, 634
DraIII	CACNNNGTG	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	217, 797
EarI	CTCTTC	2 cut(s)	217, 797
Eco24I	GRGCYC	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	254, 568, 640
EcoT38I	GRGCYC	1 cut(s)	700
FaiI	YATR	9 cut(s)	11, 263, 308, 348, 506, 522, 564, 710, 830
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	2 cut(s)	296, 404
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	1 cut(s)	759
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	1 cut(s)	759
GsaI	CCCAGC	2 cut(s)	84, 432
GsuI	CTGGAG	2 cut(s)	238, 761
HaeIII	GGCC	2 cut(s)	79, 515
HapII	CCGG	1 cut(s)	701
HhaI	GCGC	1 cut(s)	667
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	141, 548, 611
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	4 cut(s)	98, 110, 212, 811
HpyCH4III	ACNGT	6 cut(s)	49, 277, 358, 403, 459, 470
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	6 cut(s)	377, 494, 566, 647, 717, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	516, 787, 818
HpyF3I	CTNAG	3 cut(s)	549, 597, 680
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	2 cut(s)	604, 634
LmnI	GCTCC	4 cut(s)	287, 396, 703, 830
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	1 cut(s)	745
MabI	ACCWGGT	1 cut(s)	568
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	26, 43, 49, 271
MalI	GATC	2 cut(s)	606, 636
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	2 cut(s)	604, 634
MboII	GAAGA	6 cut(s)	227, 234, 449, 599, 805, 814
MhlI	GDGCHC	3 cut(s)	401, 700, 827
MluCI	AATT	4 cut(s)	367, 406, 579, 654
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	181, 218, 262, 549, 667
MseI	TTAA	4 cut(s)	155, 405, 452, 765
MslI	CAYNNNNRTG	2 cut(s)	642, 767
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	3 cut(s)	256, 570, 642
Mva1269I	GAATGC	2 cut(s)	494, 719
MvaI	CCWGG	3 cut(s)	256, 570, 642
MwoI	GCNNNNNNNGC	3 cut(s)	516, 787, 818
NdeII	GATC	2 cut(s)	604, 634
NlaIV	GGNNCC	2 cut(s)	546, 699
NmuCI	GTSAC	3 cut(s)	43, 49, 271
OliI	CACNNNNGTG	1 cut(s)	642
PctI	GAATGC	2 cut(s)	494, 719
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	1 cut(s)	760
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	254, 568, 640
PspCI	CACGTG	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	80, 428
PspGI	CCWGG	3 cut(s)	254, 568, 640
PspN4I	GGNNCC	2 cut(s)	546, 699
PspPI	GGNCC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	642, 767
SaqAI	TTAA	4 cut(s)	155, 405, 452, 765
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	2 cut(s)	604, 634
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	3 cut(s)	256, 570, 642
SduI	GDGCHC	3 cut(s)	401, 700, 827
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	642, 767
Sse9I	AATT	4 cut(s)	367, 406, 579, 654
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	254, 568, 640
TaaI	ACNGT	6 cut(s)	49, 277, 358, 403, 459, 470
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	603, 610
TasI	AATT	4 cut(s)	367, 406, 579, 654
Tru1I	TTAA	4 cut(s)	155, 405, 452, 765
Tru9I	TTAA	4 cut(s)	155, 405, 452, 765
TscAI	CASTG	4 cut(s)	54, 60, 379, 654
TseFI	GTSAC	3 cut(s)	43, 49, 271
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	3 cut(s)	43, 49, 271
TspDTI	ATGAA	3 cut(s)	80, 250, 537
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	4 cut(s)	54, 60, 379, 654
Van91I	CCANNNNNTGG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.