Rh6BG014200
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016490
Physical Location & Seq
Reverse (-)
2017958 .. 2020600
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG014200.1

Sequence Viewer

Length: 597 bp
ATGAGTGCGTCCAGGTTCATAAAGTGTGTCACAGTTGGGGATGGAGCGGTGGGCAAGACTTGTATGCTCATCTCCTACACCAGCAACACTTTCCCAACGGATTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGGAGCACAGTGAACTTGGGGTTGTGGGATACTGCTGGGCAGGAGGATTACAATAGACTAAGACCATTGAGCTACCGTGGGGCAGATGTGTTCTTACTTGCATTCTCTCTAATCAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAAGCATTATGCACCTGGTGTTCCAATTATTCTTGTTGGAACGAAGCTTGATCTTCGCGATGACAAGCAGTTCTTAACTGATCACCCTGGTGCAGTGCCAATTACCACAGCGCAGGGAGAGGAATTAAAAAAGCTGATTGGAGCTCCGATTTACATAGAATGTAGCTCGAAAACACAGCAGAATGTGAAAGCAGTCTTTGATGCCGCCATCAAAGTGGTTCTGCAGCCACCAAAGCAGAAGAAGAAAAAGAAGAGAAAGGCAAATAATGCCTGCTCCATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

198

Amino Acids

21.71

Weight (kDa)

9.28

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 2.2e-49 Ras family
Roc PF08477 8 - 121 1.8e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35020 AT4G35020 AT4G35020
fragaria_vesca FvH4_2g01250
malus_domestica MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica Prupe.8G165000_v2.0.a1
pyrus_communis pycom05g11530
rosa_chinensis RchiOBHm_Chr6g0251911
rosa_multiflora Rmu_ssc0000303.1_g000013
rosa_roxburghii Rroxscaffold_7G00216310
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014200
rosa_wichuraiana Rw6G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 369
AciI CCGC 2 cut(s) 47, 516
AdeI CACNNNGTG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 3 cut(s) 11, 325, 397
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 6 cut(s) 222, 276, 358, 445, 455, 477
AluI AGCT 6 cut(s) 222, 276, 358, 445, 455, 477
Alw21I GWGCWC 2 cut(s) 158, 457
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 158, 457
BbvI GCAGC 1 cut(s) 547
BccI CCATC 3 cut(s) 35, 143, 527
BciT130I CCWGG 3 cut(s) 13, 327, 399
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 2 cut(s) 516, 536
BlsI GCNGC 2 cut(s) 517, 537
Bme1390I CCNGG 3 cut(s) 13, 327, 399
BmrFI CCNGG 3 cut(s) 13, 327, 399
BmsI GCATC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 226, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseBI CCWGG 3 cut(s) 13, 327, 399
BseDI CCNNGG 2 cut(s) 226, 397
BseGI GGATG 2 cut(s) 46, 154
BseLI CCNNNNNNNGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 158, 457
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 158, 457
Bsp143I GATC 2 cut(s) 361, 391
Bsp68I TCGCGA 1 cut(s) 369
BspACI CCGC 2 cut(s) 47, 516
BspANI GGCC 1 cut(s) 272
BspFNI CGCG 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 226, 397
BssMI GATC 2 cut(s) 361, 391
Bst2UI CCWGG 3 cut(s) 13, 327, 399
Bst4CI ACNGT 4 cut(s) 34, 115, 160, 227
Bst6I CTCTTC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 274, 583
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 46, 154
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 364, 394
BstMBI GATC 2 cut(s) 361, 391
BstMWI GCNNNNNNNGC 3 cut(s) 273, 544, 578
BstNI CCWGG 3 cut(s) 13, 327, 399
BstSCI CCNGG 3 cut(s) 11, 325, 397
BstSFI CTRYAG 1 cut(s) 533
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 547
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 46, 154
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 136, 165, 411
BtuMI TCGCGA 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 274, 583
CfoI GCGC 1 cut(s) 424
CsiI ACCWGGT 1 cut(s) 325
CviJI RGCY 8 cut(s) 222, 272, 276, 358, 445, 455, 477, 538
CviKI_1 RGCY 8 cut(s) 222, 272, 276, 358, 445, 455, 477, 538
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 363, 393
DpnII GATC 2 cut(s) 361, 391
DraIII CACNNNGTG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 11, 325, 397
EcoT38I GRGCYC 1 cut(s) 457
FaiI YATR 7 cut(s) 20, 65, 105, 279, 321, 467, 590
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 516, 536
FokI GGATG 2 cut(s) 53, 161
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 516, 536
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 516, 536
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 272
HhaI GCGC 1 cut(s) 424
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4III ACNGT 4 cut(s) 34, 115, 160, 227
HpyCH4V TGCA 5 cut(s) 134, 251, 323, 404, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 544, 578
HpyF3I CTNAG 1 cut(s) 209
HspAI GCGC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 361, 391
LmnI GCTCC 5 cut(s) 44, 153, 452, 460, 590
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 1 cut(s) 502
MabI ACCWGGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 363, 393
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 361, 391
MboII GAAGA 4 cut(s) 356, 562, 565, 574
MhlI GDGCHC 2 cut(s) 158, 457
MluCI AATT 5 cut(s) 124, 308, 336, 411, 434
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 2 cut(s) 187, 424
MseI TTAA 2 cut(s) 386, 437
MslI CAYNNNNRTG 2 cut(s) 399, 524
MspR9I CCNGG 3 cut(s) 13, 327, 399
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 3 cut(s) 13, 327, 399
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 273, 544, 578
NdeII GATC 2 cut(s) 361, 391
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 399
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 2 cut(s) 517, 537
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 11, 325, 397
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 3 cut(s) 11, 325, 397
PstI CTGCAG 1 cut(s) 537
RruI TCGCGA 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 399, 524
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 386, 437
SatI GCNGC 2 cut(s) 516, 536
Sau3AI GATC 2 cut(s) 361, 391
ScrFI CCNGG 3 cut(s) 13, 327, 399
SduI GDGCHC 2 cut(s) 158, 457
SetI ASST 8 cut(s) 17, 224, 278, 328, 360, 447, 457, 479
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 533
SmiMI CAYNNNNRTG 2 cut(s) 399, 524
Sse9I AATT 5 cut(s) 124, 308, 336, 411, 434
SsiI CCGC 2 cut(s) 47, 516
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 3 cut(s) 11, 325, 397
TaaI ACNGT 4 cut(s) 34, 115, 160, 227
TaqI TCGA 1 cut(s) 479
TasI AATT 5 cut(s) 124, 308, 336, 411, 434
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 386, 437
Tru9I TTAA 2 cut(s) 386, 437
TscAI CASTG 3 cut(s) 136, 165, 411
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 294
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 3 cut(s) 136, 165, 411
Van91I CCANNNNNTGG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.