FvH4_2g01250
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1186176 .. 1189492
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01250.t1

Sequence Viewer

Length: 597 bp
ATGAGTGCGTCCAGGTTCATAAAGTGTGTCACTGTTGGGGATGGAGCGGTGGGCAAGACTTGTATGCTCATCTCTTACACCAGCAACACTTTCCCAACGGATTACGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGGAGCACAGTGAACTTGGGGTTGTGGGATACTGCTGGGCAGGAAGATTACAATAGACTAAGACCATTGAGCTACCGTGGGGCAGATGTGTTCTTACTTGCATTCTCTCTAATCAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAAGCATTATGCACCTGGTGTTCCGATTATTCTTGTTGGAACAAAGCTTGATCTTCGCGATGACAAGCAGTTCTTTACAGATCATCCTGGTGCAGTGCCAATTACCACAGCTCAGGGAGAGGAACTTAAAAAAACAATTGGAGCTCCGATTTACATAGAATGTAGCTCGAAAACACAGCAGAATGTGAAAGCGGTCTTTGATGCGGCGATTAAAGTGGTTCTGCAGCCGCCAAAGCAGAAGAAGAAAAAGAAGAGAAAGGCACACAATGCCTGCTCTATATTGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

199

Amino Acids

21.76

Weight (kDa)

9.28

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 6.8e-50 Ras family
Roc PF08477 8 - 121 1.8e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35020 AT4G35020 AT4G35020
fragaria_vesca FvH4_2g01250
malus_domestica MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica Prupe.8G165000_v2.0.a1
pyrus_communis pycom05g11530
rosa_chinensis RchiOBHm_Chr6g0251911
rosa_multiflora Rmu_ssc0000303.1_g000013
rosa_roxburghii Rroxscaffold_7G00216310
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014200
rosa_wichuraiana Rw6G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 369
AciI CCGC 4 cut(s) 47, 503, 515, 539
AdeI CACNNNGTG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 3 cut(s) 11, 325, 397
AluBI AGCT 6 cut(s) 222, 276, 358, 422, 455, 477
AluI AGCT 6 cut(s) 222, 276, 358, 422, 455, 477
Alw21I GWGCWC 2 cut(s) 158, 457
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 158, 457
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 35, 143
BciT130I CCWGG 3 cut(s) 13, 327, 399
BciVI GTATCC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 3 cut(s) 516, 536, 539
BlsI GCNGC 3 cut(s) 517, 537, 540
Bme1390I CCNGG 3 cut(s) 13, 327, 399
BmrFI CCNGG 3 cut(s) 13, 327, 399
BmsI GCATC 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseBI CCWGG 3 cut(s) 13, 327, 399
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 46, 154, 394
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 158, 457
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 158, 457
Bsp143I GATC 2 cut(s) 361, 391
Bsp68I TCGCGA 1 cut(s) 369
BspACI CCGC 4 cut(s) 47, 503, 515, 539
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 361, 391
Bst2UI CCWGG 3 cut(s) 13, 327, 399
Bst4CI ACNGT 4 cut(s) 34, 115, 160, 227
Bst6I CTCTTC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 274, 583
BstDEI CTNAG 2 cut(s) 209, 423
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 46, 154, 394
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 2 cut(s) 364, 394
BstMBI GATC 2 cut(s) 361, 391
BstMWI GCNNNNNNNGC 3 cut(s) 273, 544, 578
BstNI CCWGG 3 cut(s) 13, 327, 399
BstSCI CCNGG 3 cut(s) 11, 325, 397
BstSFI CTRYAG 1 cut(s) 533
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 547
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 3 cut(s) 46, 154, 394
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 4 cut(s) 30, 136, 165, 411
BtuMI TCGCGA 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 274, 583
CsiI ACCWGGT 1 cut(s) 325
CviJI RGCY 8 cut(s) 222, 272, 276, 358, 422, 455, 477, 538
CviKI_1 RGCY 8 cut(s) 222, 272, 276, 358, 422, 455, 477, 538
DdeI CTNAG 2 cut(s) 209, 423
DpnI GATC 2 cut(s) 363, 393
DpnII GATC 2 cut(s) 361, 391
DraIII CACNNNGTG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 11, 325, 397
EcoT38I GRGCYC 1 cut(s) 457
FaiI YATR 6 cut(s) 20, 65, 279, 321, 467, 590
FalI AAGNNNNNCTT 2 cut(s) 368, 400
Fnu4HI GCNGC 3 cut(s) 516, 536, 539
FokI GGATG 3 cut(s) 53, 161, 381
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 3 cut(s) 516, 536, 539
GluI GCNGC 3 cut(s) 516, 536, 539
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 336, 459
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4III ACNGT 4 cut(s) 34, 115, 160, 227
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 5 cut(s) 134, 251, 323, 404, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 544, 578
HpyF3I CTNAG 2 cut(s) 209, 423
HpySE526I ACGT 1 cut(s) 105
Kzo9I GATC 2 cut(s) 361, 391
LmnI GCTCC 4 cut(s) 44, 153, 452, 460
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 1 cut(s) 502
MabI ACCWGGT 1 cut(s) 325
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 363, 393
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 361, 391
MboII GAAGA 5 cut(s) 206, 356, 562, 565, 574
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 158, 457
MluCI AATT 4 cut(s) 124, 308, 411, 447
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 1 cut(s) 424
MseI TTAA 2 cut(s) 438, 522
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 3 cut(s) 13, 327, 399
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 3 cut(s) 13, 327, 399
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 273, 544, 578
NdeII GATC 2 cut(s) 361, 391
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 369
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 3 cut(s) 517, 537, 540
Ppu21I YACGTR 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 11, 325, 397
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 3 cut(s) 11, 325, 397
PstI CTGCAG 1 cut(s) 537
RruI TCGCGA 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 438, 522
SatI GCNGC 3 cut(s) 516, 536, 539
Sau3AI GATC 2 cut(s) 361, 391
ScrFI CCNGG 3 cut(s) 13, 327, 399
SduI GDGCHC 2 cut(s) 158, 457
SetI ASST 9 cut(s) 17, 108, 224, 278, 328, 360, 424, 457, 479
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 4 cut(s) 124, 308, 411, 447
SsiI CCGC 4 cut(s) 47, 503, 515, 539
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 3 cut(s) 11, 325, 397
TaaI ACNGT 4 cut(s) 34, 115, 160, 227
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 479
TasI AATT 4 cut(s) 124, 308, 411, 447
TauI GCSGC 2 cut(s) 518, 541
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 438, 522
Tru9I TTAA 2 cut(s) 438, 522
TscAI CASTG 4 cut(s) 37, 136, 165, 411
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 294
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 37, 136, 165, 411
Van91I CCANNNNNTGG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.