MD10G1095000.v1.1
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
14876544 .. 14879920
3377 bp
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UTR
Exon/CDS
Intron
MD10G1095000.v1.1.491

Sequence Viewer

Length: 597 bp
ATGAGTGCCTCCAGGTTCATAAAGTGTGTCACAGTTGGGGATGGAGCTGTGGGAAAAACCTGTATGCTCATCTCCTACACCAGCAACACCTTTCCTACGGATTATGTGCCAACTGTGTTTGACAATTTCAGTGCAAATGTTGTTGTGGATGGGAGCACCGTCAATTTGGGGTTGTGGGACACTGCTGGGCAGGAAGATTACAATAGATTAAGACCACTGAGCTATCGTGGGGCAGATGTCTTCCTACTTGCATTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAATGGGTTCCTGAATTGAGGCATTATGCACCTAGTGTTCCAATTATTCTTGTTGGAACTAAGCTCGATCTTCGGGATGATAGGCAGTTCTTTGTAGATCACCCTGGTGCAGTGCCAATTACCACAGCACAGGGAGAGGAACTAAAGAAGCTGATTGGGGCTCCAGTTTACATAGAATGCAGTTCAAAAACGCAGCAGAATGTGAAAGCAGTCTTCGATGCAGCCATTAAAGTGGTTCTCCAGCCACCGAAGCAGAAGAAGAAAAAGAAGAGAAAGGCACAGAAGGCCTGCTCCATATTGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

199

Amino Acids

21.83

Weight (kDa)

9.39

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 1.1e-49 Ras family
Roc PF08477 8 - 121 1.2e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35020 AT4G35020 AT4G35020
fragaria_vesca FvH4_2g01250
malus_domestica MD05G1121100.v1.1 MD10G1095000.v1.1
prunus_persica Prupe.8G165000_v2.0.a1
pyrus_communis pycom05g11530
rosa_chinensis RchiOBHm_Chr6g0251911
rosa_multiflora Rmu_ssc0000303.1_g000013
rosa_roxburghii Rroxscaffold_7G00216310
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014200
rosa_wichuraiana Rw6G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 480
AjnI CCWGG 2 cut(s) 11, 397
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 5 cut(s) 47, 222, 276, 358, 445
AluI AGCT 5 cut(s) 47, 222, 276, 358, 445
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 2 cut(s) 270, 579
ApeKI GCWGC 2 cut(s) 487, 515
AsuHPI GGTGA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 2 cut(s) 232, 499
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 499, 527
BccI CCATC 2 cut(s) 35, 143
BciT130I CCWGG 2 cut(s) 13, 399
BfaI CTAG 1 cut(s) 327
BisI GCNGC 2 cut(s) 488, 516
BlsI GCNGC 2 cut(s) 489, 517
Bme1390I CCNGG 2 cut(s) 13, 399
BmiI GGNNCC 2 cut(s) 303, 456
BmrFI CCNGG 2 cut(s) 13, 399
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 2 cut(s) 232, 499
BpmI CTGGAG 2 cut(s) 441, 518
BsaJI CCNNGG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 2 cut(s) 13, 399
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 46, 154, 376
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 2 cut(s) 499, 527
BseYI CCCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 2 cut(s) 272, 581
BsiHKAI GWGCWC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 2 cut(s) 251, 476
BsnI GGCC 2 cut(s) 272, 581
Bsp1286I GDGCHC 2 cut(s) 158, 457
Bsp143I GATC 2 cut(s) 361, 391
BspANI GGCC 2 cut(s) 272, 581
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 303, 456
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 2 cut(s) 361, 391
Bst2UI CCWGG 2 cut(s) 13, 399
Bst4CI ACNGT 3 cut(s) 34, 115, 160
Bst6I CTCTTC 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 274, 583
BstDEI CTNAG 2 cut(s) 218, 354
BstF5I GGATG 3 cut(s) 46, 154, 376
BstKTI GATC 2 cut(s) 364, 394
BstMBI GATC 2 cut(s) 361, 391
BstMWI GCNNNNNNNGC 3 cut(s) 273, 544, 578
BstNI CCWGG 2 cut(s) 13, 399
BstSCI CCNGG 2 cut(s) 11, 397
BstV1I GCAGC 2 cut(s) 499, 527
BstV2I GAAGAC 2 cut(s) 232, 499
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuRI GGCC 2 cut(s) 272, 581
BtsCI GGATG 3 cut(s) 46, 154, 376
BtsI GCAGTG 2 cut(s) 180, 411
BtsIMutI CAGTG 4 cut(s) 136, 180, 215, 411
Cac8I GCNNGC 2 cut(s) 274, 583
DdeI CTNAG 2 cut(s) 218, 354
DpnI GATC 2 cut(s) 363, 393
DpnII GATC 2 cut(s) 361, 391
DraIII CACNNNGTG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco147I AGGCCT 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 11, 397
EcoT38I GRGCYC 1 cut(s) 457
FaiI YATR 8 cut(s) 20, 65, 105, 263, 279, 321, 467, 590
FaqI GGGAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 488, 516
FokI GGATG 3 cut(s) 53, 161, 383
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 488, 516
FspBI CTAG 1 cut(s) 327
GluI GCNGC 2 cut(s) 488, 516
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 441, 518
HaeIII GGCC 2 cut(s) 272, 581
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 463
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 3 cut(s) 34, 115, 160
HpyCH4V TGCA 6 cut(s) 134, 251, 323, 404, 474, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 544, 578
HpyF3I CTNAG 2 cut(s) 218, 354
Kzo9I GATC 2 cut(s) 361, 391
LmnI GCTCC 4 cut(s) 44, 153, 460, 590
Lsp1109I GCAGC 2 cut(s) 499, 527
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 363, 393
MboI GATC 2 cut(s) 361, 391
MboII GAAGA 7 cut(s) 206, 232, 356, 499, 562, 565, 574
MhlI GDGCHC 2 cut(s) 158, 457
MluCI AATT 5 cut(s) 124, 163, 308, 336, 411
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 3 cut(s) 19, 306, 424
MseI TTAA 2 cut(s) 209, 522
MslI CAYNNNNRTG 2 cut(s) 399, 524
MspR9I CCNGG 2 cut(s) 13, 399
Mva1269I GAATGC 2 cut(s) 251, 476
MvaI CCWGG 2 cut(s) 13, 399
MwoI GCNNNNNNNGC 3 cut(s) 273, 544, 578
NdeII GATC 2 cut(s) 361, 391
NlaIV GGNNCC 2 cut(s) 303, 456
NmuCI GTSAC 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 581
PctI GAATGC 2 cut(s) 251, 476
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 2 cut(s) 489, 517
Psp6I CCWGG 2 cut(s) 11, 397
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 11, 397
PspN4I GGNNCC 2 cut(s) 303, 456
RseI CAYNNNNRTG 2 cut(s) 399, 524
SaqAI TTAA 2 cut(s) 209, 522
SatI GCNGC 2 cut(s) 488, 516
Sau3AI GATC 2 cut(s) 361, 391
ScrFI CCNGG 2 cut(s) 13, 399
SduI GDGCHC 2 cut(s) 158, 457
SetI ASST 9 cut(s) 17, 49, 62, 92, 224, 278, 328, 360, 447
SfaNI GCATC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 399, 524
Sse9I AATT 5 cut(s) 124, 163, 308, 336, 411
SseBI AGGCCT 1 cut(s) 581
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 11, 397
TaaI ACNGT 3 cut(s) 34, 115, 160
TaqI TCGA 2 cut(s) 360, 510
TasI AATT 5 cut(s) 124, 163, 308, 336, 411
Tru1I TTAA 2 cut(s) 209, 522
Tru9I TTAA 2 cut(s) 209, 522
TscAI CASTG 4 cut(s) 136, 187, 222, 411
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 487, 515
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 294
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 136, 187, 222, 411
Van91I CCANNNNNTGG 1 cut(s) 297
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.